>gb|AC122143.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0090F16, complete sequence
          Length = 147341

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 69/83 (83%)
 Strand = Plus / Minus

                                                                         
Query: 48    aggtactccgcggtgagaggcttgaagacacgctgctggtctgactctagcgcggccgcg 107
             |||||| |||| ||||||||||||||||  || || | ||| ||||| ||||| ||||| 
Sbjct: 94224 aggtacgccgccgtgagaggcttgaagatgcggtggtcgtcggactccagcgccgccgcc 94165

                                    
Query: 108   aggcgaggccatatgaaggcgct 130
             || || ||||||||| |||||||
Sbjct: 94164 agccgcggccatatgtaggcgct 94142

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 69/83 (83%)
 Strand = Plus / Plus

                                                                            
Query: 48       aggtactccgcggtgagaggcttgaagacacgctgctggtctgactctagcgcggccgcg 107
                |||||| |||| ||||||||||||||||  || || | ||| ||||| ||||| ||||| 
Sbjct: 24728264 aggtacgccgccgtgagaggcttgaagatgcggtggtcgtcggactccagcgccgccgcc 24728323

                                       
Query: 108      aggcgaggccatatgaaggcgct 130
                || || ||||||||| |||||||
Sbjct: 24728324 agccgcggccatatgtaggcgct 24728346

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 69/83 (83%)
 Strand = Plus / Plus

                                                                            
Query: 48       aggtactccgcggtgagaggcttgaagacacgctgctggtctgactctagcgcggccgcg 107
                |||||| |||| ||||||||||||||||  || || | ||| ||||| ||||| ||||| 
Sbjct: 25039934 aggtacgccgccgtgagaggcttgaagatgcggtggtcgtcggactccagcgccgccgcc 25039993

                                       
Query: 108      aggcgaggccatatgaaggcgct 130
                || || ||||||||| |||||||
Sbjct: 25039994 agccgcggccatatgtaggcgct 25040016

>emb|AL451005.9| Human DNA sequence from clone RP11-92B10 on chromosome X Contains the
             5' end of a variant of the CUL4B gene for cullin 4B and
             the 5' end of a variant of the gene for MCT-1 protein
             (MCT-1), complete sequence
          Length = 26768

 Score = 42.1 bits (21), Expect = 0.83
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 135   atccacgttcctgggtttccc 155
             |||||||||||||||||||||
Sbjct: 17593 atccacgttcctgggtttccc 17573

>gb|AE005674.1| Shigella flexneri 2a str. 301, complete genome
          Length = 4607203

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 211     ccggcatcgccagcgcggcg 230
               ||||||||||||||||||||
Sbjct: 3198311 ccggcatcgccagcgcggcg 3198292

>gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome
          Length = 3730232

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 178     accccgtgcacagcctgccg 197
               ||||||||||||||||||||
Sbjct: 3446202 accccgtgcacagcctgccg 3446221

>ref|XM_477237.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1047

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 45   ccaaggtactccgcggtgagaggcttgaagac 76
            ||||| ||| |||| |||||||||||||||||
Sbjct: 1037 ccaagatacgccgccgtgagaggcttgaagac 1006

>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome
          Length = 5178466

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 227    ggcgtggccgaagccgcggc 246
              ||||||||||||||||||||
Sbjct: 462823 ggcgtggccgaagccgcggc 462804

>gb|AE014075.1| Escherichia coli CFT073, complete genome
          Length = 5231428

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 211     ccggcatcgccagcgcggcg 230
               ||||||||||||||||||||
Sbjct: 3649866 ccggcatcgccagcgcggcg 3649847

>gb|CP000243.1| Escherichia coli UTI89, complete genome
          Length = 5065741

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 211     ccggcatcgccagcgcggcg 230
               ||||||||||||||||||||
Sbjct: 3437082 ccggcatcgccagcgcggcg 3437063

>gb|AF056246.2| Xanthomonas campestris pv. vesicatoria hrp gene cluster, partial
             sequence
          Length = 14542

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 227   ggcgtggccgaagccgcggc 246
             ||||||||||||||||||||
Sbjct: 11038 ggcgtggccgaagccgcggc 11057

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                               
Query: 45      ccaaggtactccgcggtgagaggcttgaagac 76
               ||||| ||| |||| |||||||||||||||||
Sbjct: 8092508 ccaagatacgccgccgtgagaggcttgaagac 8092477

>gb|AE014073.1| Shigella flexneri 2a str. 2457T, complete genome
          Length = 4599354

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 211     ccggcatcgccagcgcggcg 230
               ||||||||||||||||||||
Sbjct: 3186973 ccggcatcgccagcgcggcg 3186954

>dbj|AP003738.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1058_C08
          Length = 117923

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 45    ccaaggtactccgcggtgagaggcttgaagac 76
             ||||| ||| |||| |||||||||||||||||
Sbjct: 26280 ccaagatacgccgccgtgagaggcttgaagac 26249

>gb|AY110277.1| Zea mays CL615_-1 mRNA sequence
          Length = 982

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 123 aaggcgctgatgatccacgt 142
           ||||||||||||||||||||
Sbjct: 617 aaggcgctgatgatccacgt 636

>gb|CP000034.1| Shigella dysenteriae Sd197, complete genome
          Length = 4369232

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 211     ccggcatcgccagcgcggcg 230
               ||||||||||||||||||||
Sbjct: 3009575 ccggcatcgccagcgcggcg 3009556


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,154,067
Number of Sequences: 3902068
Number of extensions: 1154067
Number of successful extensions: 20288
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 20085
Number of HSP's gapped (non-prelim): 203
length of query: 253
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 231
effective length of database: 17,147,199,772
effective search space: 3961003147332
effective search space used: 3961003147332
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)