ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags35o11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_478078.1| Oryza sativa (japonica cultivar-group), mRNA 367 3e-98
2dbj|AK066346.1| Oryza sativa (japonica cultivar-group) cDNA clon... 367 3e-98
3gb|AY107911.1| Zea mays PCO070303 mRNA sequence 359 8e-96
4dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 151 4e-33
5dbj|AP005261.4| Oryza sativa (japonica cultivar-group) genomic D... 151 4e-33
6gb|AC122508.3| Mus musculus BAC clone RP24-427G15 from chromosom... 44 0.62
7gb|AC132269.3| Mus musculus BAC clone RP24-409M22 from chromosom... 44 0.62
8gb|AC007060.3|T5I8 Arabidopsis thaliana chromosome 1 BAC T5I8 se... 44 0.62
9gb|AC078814.23| Homo sapiens 12 BAC RP11-848D3 (Roswell Park Can... 44 0.62
10emb|CR318600.13| Zebrafish DNA sequence from clone DKEY-37F13 in... 42 2.4
11emb|BX323464.18| Zebrafish DNA sequence from clone CH211-93E11 i... 42 2.4
12gb|AC139019.3| Homo sapiens chromosome 8, clone CTD-3091F23, com... 42 2.4
13gb|AC097662.5| Homo sapiens BAC clone RP11-563C6 from 2, complet... 42 2.4
14gb|AY305836.1| Caenorhabditis elegans clone yk600f9 nuclear rece... 40 9.7
15gb|AC147352.2| Xenopus tropicalis clone CH216-157J16, complete s... 40 9.7
16gb|AE017355.1| Bacillus thuringiensis serovar konkukian str. 97-... 40 9.7
17ref|XM_360852.1| Magnaporthe grisea 70-15 predicted protein (MG0... 40 9.7
18gb|AE017334.2| Bacillus anthracis str. 'Ames Ancestor', complete... 40 9.7
19gb|BC075552.1| Xenopus tropicalis cDNA clone IMAGE:6992225, part... 40 9.7
20gb|AE017225.1| Bacillus anthracis str. Sterne, complete genome 40 9.7
21ref|XM_711024.1| Candida albicans SC5314 hypothetical protein (C... 40 9.7
22gb|AC146269.3| Pan troglodytes BAC clone RP43-29B18 from 7, comp... 40 9.7
23gb|AC125216.3| Mus musculus BAC clone RP23-109J14 from 1, comple... 40 9.7
24gb|AC131676.2| Mus musculus BAC clone RP23-330L3 from chromosome... 40 9.7
25gb|AC005100.2| Homo sapiens BAC clone CTA-351O6 from 7, complete... 40 9.7
26gb|AC004935.1| Homo sapiens PAC clone RP5-953F6 from 7, complete... 40 9.7
27gb|U41542.2| Caenorhabditis elegans cosmid C07A12, complete sequ... 40 9.7
28emb|AL392167.7| Human DNA sequence from clone RP11-514M10 on chr... 40 9.7
29gb|AC095402.7| Rattus norvegicus 2 BAC CH230-7A22 (Children's Ho... 40 9.7
30gb|AF273781.1| Caenorhabditis elegans clone yk215f10 nuclear rec... 40 9.7
31gb|AC011460.3| Homo sapiens chromosome 19 clone CTC-429C10, comp... 40 9.7
32gb|AC112723.3| Homo sapiens BAC clone RP11-785D16 from 2, comple... 40 9.7
33dbj|AP007150.1| Aspergillus oryzae RIB40 genomic DNA, SC009 40 9.7
34gb|DQ156349.1| Uncultured marine group II euryarchaeote HF70_39H... 40 9.7
35dbj|AK032492.1| Mus musculus adult male olfactory brain cDNA, RI... 40 9.7
36ref|NM_001029194.1| Caenorhabditis elegans Nuclear Hormone Recep... 40 9.7
37gb|AC018880.6| Homo sapiens BAC clone RP11-336P15 from 2, comple... 40 9.7
38gb|AC025097.41| Homo sapiens 12 BAC RP11-285E4 (Roswell Park Can... 40 9.7
39gb|AC109129.3| Homo sapiens 3 BAC RP11-784B9 (Roswell Park Cance... 40 9.7
40emb|BX936364.6| Zebrafish DNA sequence from clone CH211-247G11 i... 40 9.7
41emb|CR760038.2| Xenopus tropicalis finished cDNA, clone TNeu063g02 40 9.7
42gb|AC117708.10| Mus musculus chromosome 7, clone RP23-474J16, co... 40 9.7
43gb|AE016879.1| Bacillus anthracis str. Ames, complete genome 40 9.7
44gb|AE008384.1| Methanosarcina mazei strain Goe1, complete genome 40 9.7
45gb|AC145956.4| Gallus gallus BAC clone CH261-14N1 from chromosom... 40 9.7
46dbj|AP006423.1| Lotus japonicus genomic DNA, chromosome 5, clone... 40 9.7 
>ref|XM_478078.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1218

 Score =  367 bits (185), Expect = 3e-98
 Identities = 332/381 (87%)
 Strand = Plus / Minus

                                                                       
Query: 322 ataggggttttgggctggtaatgctcatcggtatcgatttcttcaatttcctgcacaata 381
           ||||||||||| ||||||||||||||||| ||||| | |||||| || ||||| ||||||
Sbjct: 858 ataggggtttttggctggtaatgctcatcagtatcaacttcttcgatctcctgaacaata 799

                                                                       
Query: 382 tcttctcccttgataactctcccaaacaaaatgatcttgtcactcaagtcaggaattgga 441
           |||| ||| |||||||||  |||||| | ||  | ||||||| |||||||||||||||||
Sbjct: 798 tcttgtccattgataacttgcccaaatacaacaagcttgtcattcaagtcaggaattgga 739

                                                                       
Query: 442 gcagtcgtgataaatagatcaaatcctttattattaggactccttgtagtcccaatcatg 501
           ||||| |||||||| |||||||||||||||||||||||| || | |||||||| ||||||
Sbjct: 738 gcagttgtgataaaaagatcaaatcctttattattaggattcttcgtagtcccgatcatg 679

                                                                       
Query: 502 aaggcctcatgctttggactgagagaattttctccactagctttagctttcagtatccat 561
           || ||||| ||||||||||| ||||  ||||||||||| ||||| |||||||||||||||
Sbjct: 678 aatgcctcgtgctttggacttagagcgttttctccactggctttggctttcagtatccat 619

                                                                       
Query: 562 tcttgggcagctccattcaaatcaaaatcacctccttggattaaaaagttttttatgaca 621
           || |||||||| ||||| ||||| |||||||| ||||| |||| ||||||||| ||||||
Sbjct: 618 tcctgggcagcaccattgaaatcgaaatcacccccttgaattacaaagtttttgatgaca 559

                                                                       
Query: 622 tgacgaaatggcattcctttaaaataatcaatcttgcataagttgataaatctgtccaca 681
           |||||||| ||||||||||||||||  | | ||||||| ||| | | |||||| ||||||
Sbjct: 558 tgacgaaacggcattcctttaaaatggttactcttgcacaagctaacaaatctatccaca 499

                                
Query: 682 acaccagcagaagcatctttg 702
           ||| |||||||||||||||||
Sbjct: 498 acatcagcagaagcatctttg 478
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>dbj|AK066346.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013061P09, full
           insert sequence
          Length = 1215

 Score =  367 bits (185), Expect = 3e-98
 Identities = 332/381 (87%)
 Strand = Plus / Minus

                                                                       
Query: 322 ataggggttttgggctggtaatgctcatcggtatcgatttcttcaatttcctgcacaata 381
           ||||||||||| ||||||||||||||||| ||||| | |||||| || ||||| ||||||
Sbjct: 855 ataggggtttttggctggtaatgctcatcagtatcaacttcttcgatctcctgaacaata 796

                                                                       
Query: 382 tcttctcccttgataactctcccaaacaaaatgatcttgtcactcaagtcaggaattgga 441
           |||| ||| |||||||||  |||||| | ||  | ||||||| |||||||||||||||||
Sbjct: 795 tcttgtccattgataacttgcccaaatacaacaagcttgtcattcaagtcaggaattgga 736

                                                                       
Query: 442 gcagtcgtgataaatagatcaaatcctttattattaggactccttgtagtcccaatcatg 501
           ||||| |||||||| |||||||||||||||||||||||| || | |||||||| ||||||
Sbjct: 735 gcagttgtgataaaaagatcaaatcctttattattaggattcttcgtagtcccgatcatg 676

                                                                       
Query: 502 aaggcctcatgctttggactgagagaattttctccactagctttagctttcagtatccat 561
           || ||||| ||||||||||| ||||  ||||||||||| ||||| |||||||||||||||
Sbjct: 675 aatgcctcgtgctttggacttagagcgttttctccactggctttggctttcagtatccat 616

                                                                       
Query: 562 tcttgggcagctccattcaaatcaaaatcacctccttggattaaaaagttttttatgaca 621
           || |||||||| ||||| ||||| |||||||| ||||| |||| ||||||||| ||||||
Sbjct: 615 tcctgggcagcaccattgaaatcgaaatcacccccttgaattacaaagtttttgatgaca 556

                                                                       
Query: 622 tgacgaaatggcattcctttaaaataatcaatcttgcataagttgataaatctgtccaca 681
           |||||||| ||||||||||||||||  | | ||||||| ||| | | |||||| ||||||
Sbjct: 555 tgacgaaacggcattcctttaaaatggttactcttgcacaagctaacaaatctatccaca 496

                                
Query: 682 acaccagcagaagcatctttg 702
           ||| |||||||||||||||||
Sbjct: 495 acatcagcagaagcatctttg 475
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>gb|AY107911.1| Zea mays PCO070303 mRNA sequence
          Length = 1110

 Score =  359 bits (181), Expect = 8e-96
 Identities = 322/369 (87%)
 Strand = Plus / Minus

                                                                       
Query: 334 ggctggtaatgctcatcggtatcgatttcttcaatttcctgcacaatatcttctcccttg 393
           ||||||||||||||||| || |||| ||||||||| ||||| || || || |||||||||
Sbjct: 835 ggctggtaatgctcatcagtgtcgacttcttcaatctcctgaacgatgtcctctcccttg 776

                                                                       
Query: 394 ataactctcccaaacaaaatgatcttgtcactcaagtcaggaattggagcagtcgtgata 453
           ||||||| |||||| | ||  | ||||||| ||||||||||||||||||| |||||||||
Sbjct: 775 ataactcgcccaaatacaacaagcttgtcattcaagtcaggaattggagccgtcgtgata 716

                                                                       
Query: 454 aatagatcaaatcctttattattaggactccttgtagtcccaatcatgaaggcctcatgc 513
           || | ||||||||||||  |||||||| || ||| |||||||||||| || |||||||| 
Sbjct: 715 aacaaatcaaatcctttggtattaggattctttgcagtcccaatcataaatgcctcatgt 656

                                                                       
Query: 514 tttggactgagagaattttctccactagctttagctttcagtatccattcttgggcagct 573
           ||||||||||||  ||||| |||||||||||||||||||  |||||||||||||| ||||
Sbjct: 655 tttggactgagatcattttttccactagctttagctttcgttatccattcttgggaagct 596

                                                                       
Query: 574 ccattcaaatcaaaatcacctccttggattaaaaagttttttatgacatgacgaaatggc 633
           ||||  |||||||||||||||||||| |||| ||| |||||||||| ||| |||||||||
Sbjct: 595 ccatcaaaatcaaaatcacctccttgaattacaaaattttttatgatatgccgaaatggc 536

                                                                       
Query: 634 attcctttaaaataatcaatcttgcataagttgataaatctgtccacaacaccagcagaa 693
           |||||||| |||| || | ||||||| |||||||||||||| ||||||||  ||||||||
Sbjct: 535 attcctttgaaatgattactcttgcacaagttgataaatctatccacaacgtcagcagaa 476

                    
Query: 694 gcatctttg 702
           |||||||||
Sbjct: 475 gcatctttg 467
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  151 bits (76), Expect = 4e-33
 Identities = 133/152 (87%)
 Strand = Plus / Plus

                                                                            
Query: 371      cctgcacaatatcttctcccttgataactctcccaaacaaaatgatcttgtcactcaagt 430
                |||| |||||||||| ||| |||||||||  |||||| | ||  | ||||||| ||||||
Sbjct: 17202184 cctgaacaatatcttgtccattgataacttgcccaaatacaacaagcttgtcattcaagt 17202243

                                                                            
Query: 431      caggaattggagcagtcgtgataaatagatcaaatcctttattattaggactccttgtag 490
                |||||||||||||||| |||||||| |||||||||||||||||||||||| || | ||||
Sbjct: 17202244 caggaattggagcagttgtgataaaaagatcaaatcctttattattaggattcttcgtag 17202303

                                                
Query: 491      tcccaatcatgaaggcctcatgctttggactg 522
                |||| |||||||| ||||| ||||||||||||
Sbjct: 17202304 tcccgatcatgaatgcctcgtgctttggactg 17202335



 Score =  147 bits (74), Expect = 6e-32
 Identities = 107/118 (90%)
 Strand = Plus / Plus

                                                                            
Query: 529      ttttctccactagctttagctttcagtatccattcttgggcagctccattcaaatcaaaa 588
                ||||||||||| ||||| ||||||||||||||||| |||||||| ||||| ||||| |||
Sbjct: 17202446 ttttctccactggctttggctttcagtatccattcctgggcagcaccattgaaatcgaaa 17202505

                                                                          
Query: 589      tcacctccttggattaaaaagttttttatgacatgacgaaatggcattcctttaaaat 646
                ||||| ||||| |||| ||||||||| |||||||||||||| ||||||||||||||||
Sbjct: 17202506 tcacccccttgaattacaaagtttttgatgacatgacgaaacggcattcctttaaaat 17202563



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 47/53 (88%)
 Strand = Plus / Plus

                                                                     
Query: 322      ataggggttttgggctggtaatgctcatcggtatcgatttcttcaatttcctg 374
                ||||||||||| ||||||||||||||||| ||||| | |||||| || |||||
Sbjct: 17201754 ataggggtttttggctggtaatgctcatcagtatcaacttcttcgatctcctg 17201806



 Score = 52.0 bits (26), Expect = 0.003
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                                  
Query: 669      aaatctgtccacaacaccagcagaagcatctttg 702
                |||||| ||||||||| |||||||||||||||||
Sbjct: 17204342 aaatctatccacaacatcagcagaagcatctttg 17204375
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>dbj|AP005261.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
            clone:P0640E12
          Length = 167353

 Score =  151 bits (76), Expect = 4e-33
 Identities = 133/152 (87%)
 Strand = Plus / Plus

                                                                        
Query: 371  cctgcacaatatcttctcccttgataactctcccaaacaaaatgatcttgtcactcaagt 430
            |||| |||||||||| ||| |||||||||  |||||| | ||  | ||||||| ||||||
Sbjct: 7309 cctgaacaatatcttgtccattgataacttgcccaaatacaacaagcttgtcattcaagt 7368

                                                                        
Query: 431  caggaattggagcagtcgtgataaatagatcaaatcctttattattaggactccttgtag 490
            |||||||||||||||| |||||||| |||||||||||||||||||||||| || | ||||
Sbjct: 7369 caggaattggagcagttgtgataaaaagatcaaatcctttattattaggattcttcgtag 7428

                                            
Query: 491  tcccaatcatgaaggcctcatgctttggactg 522
            |||| |||||||| ||||| ||||||||||||
Sbjct: 7429 tcccgatcatgaatgcctcgtgctttggactg 7460



 Score =  147 bits (74), Expect = 6e-32
 Identities = 107/118 (90%)
 Strand = Plus / Plus

                                                                        
Query: 529  ttttctccactagctttagctttcagtatccattcttgggcagctccattcaaatcaaaa 588
            ||||||||||| ||||| ||||||||||||||||| |||||||| ||||| ||||| |||
Sbjct: 7571 ttttctccactggctttggctttcagtatccattcctgggcagcaccattgaaatcgaaa 7630

                                                                      
Query: 589  tcacctccttggattaaaaagttttttatgacatgacgaaatggcattcctttaaaat 646
            ||||| ||||| |||| ||||||||| |||||||||||||| ||||||||||||||||
Sbjct: 7631 tcacccccttgaattacaaagtttttgatgacatgacgaaacggcattcctttaaaat 7688



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 47/53 (88%)
 Strand = Plus / Plus

                                                                 
Query: 322  ataggggttttgggctggtaatgctcatcggtatcgatttcttcaatttcctg 374
            ||||||||||| ||||||||||||||||| ||||| | |||||| || |||||
Sbjct: 6879 ataggggtttttggctggtaatgctcatcagtatcaacttcttcgatctcctg 6931



 Score = 52.0 bits (26), Expect = 0.003
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                              
Query: 669  aaatctgtccacaacaccagcagaagcatctttg 702
            |||||| ||||||||| |||||||||||||||||
Sbjct: 9467 aaatctatccacaacatcagcagaagcatctttg 9500
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>gb|AC122508.3| Mus musculus BAC clone RP24-427G15 from chromosome 12, complete
            sequence
          Length = 169567

 Score = 44.1 bits (22), Expect = 0.62
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 55   gaaaataaagcaaaggtataaa 76
            ||||||||||||||||||||||
Sbjct: 4185 gaaaataaagcaaaggtataaa 4164
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>gb|AC132269.3| Mus musculus BAC clone RP24-409M22 from chromosome 12, complete sequence
          Length = 172018

 Score = 44.1 bits (22), Expect = 0.62
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 55     gaaaataaagcaaaggtataaa 76
              ||||||||||||||||||||||
Sbjct: 148770 gaaaataaagcaaaggtataaa 148749
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>gb|AC007060.3|T5I8 Arabidopsis thaliana chromosome 1 BAC T5I8 sequence, complete sequence
          Length = 96183

 Score = 44.1 bits (22), Expect = 0.62
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 54    tgaaaataaagcaaaggtataaattt 79
             ||||||||||| ||||||||||||||
Sbjct: 72385 tgaaaataaagaaaaggtataaattt 72360
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>gb|AC078814.23| Homo sapiens 12 BAC RP11-848D3 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 191463

 Score = 44.1 bits (22), Expect = 0.62
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 402    cccaaacaaaatgatcttgtcactca 427
              ||||||||||||||||||| ||||||
Sbjct: 170015 cccaaacaaaatgatcttgacactca 169990
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>emb|CR318600.13| Zebrafish DNA sequence from clone DKEY-37F13 in linkage group 7, complete
              sequence
          Length = 257374

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 622    tgacgaaatggcattccttta 642
              |||||||||||||||||||||
Sbjct: 196436 tgacgaaatggcattccttta 196416
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>emb|BX323464.18| Zebrafish DNA sequence from clone CH211-93E11 in linkage group 12,
              complete sequence
          Length = 167058

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 598    tggattaaaaagttttttatgacat 622
              |||||||||| ||||||||||||||
Sbjct: 129097 tggattaaaatgttttttatgacat 129121
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>gb|AC139019.3| Homo sapiens chromosome 8, clone CTD-3091F23, complete sequence
          Length = 134096

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 605    aaaagttttttatgacatgacgaaa 629
              |||||||||| ||||||||||||||
Sbjct: 104205 aaaagtttttaatgacatgacgaaa 104181
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>gb|AC097662.5| Homo sapiens BAC clone RP11-563C6 from 2, complete sequence
          Length = 206624

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 637    cctttaaaataatcaatcttg 657
              |||||||||||||||||||||
Sbjct: 167550 cctttaaaataatcaatcttg 167570
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>gb|AY305836.1| Caenorhabditis elegans clone yk600f9 nuclear receptor NHR-35 mRNA,
            partial cds
          Length = 1750

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 596  cttggattaaaaagtttttt 615
            ||||||||||||||||||||
Sbjct: 1500 cttggattaaaaagtttttt 1481
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>gb|AC147352.2| Xenopus tropicalis clone CH216-157J16, complete sequence
          Length = 141579

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 547  gctttcagtatccattcttg 566
            ||||||||||||||||||||
Sbjct: 7202 gctttcagtatccattcttg 7221
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>gb|AE017355.1| Bacillus thuringiensis serovar konkukian str. 97-27, complete genome
          Length = 5237682

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 13      ttgttgaaatttacaacgta 32
               ||||||||||||||||||||
Sbjct: 3336726 ttgttgaaatttacaacgta 3336707
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>ref|XM_360852.1| Magnaporthe grisea 70-15 predicted protein (MG03395.4) partial mRNA
          Length = 519

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 677 ccacaacaccagcagaagca 696
           ||||||||||||||||||||
Sbjct: 125 ccacaacaccagcagaagca 144
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>gb|AE017334.2| Bacillus anthracis str. 'Ames Ancestor', complete genome
          Length = 5227419

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 13      ttgttgaaatttacaacgta 32
               ||||||||||||||||||||
Sbjct: 3266157 ttgttgaaatttacaacgta 3266138
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>gb|BC075552.1| Xenopus tropicalis cDNA clone IMAGE:6992225, partial cds
          Length = 1598

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 634  attcctttaaaataatcaat 653
            ||||||||||||||||||||
Sbjct: 1543 attcctttaaaataatcaat 1524
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>gb|AE017225.1| Bacillus anthracis str. Sterne, complete genome
          Length = 5228663

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 13      ttgttgaaatttacaacgta 32
               ||||||||||||||||||||
Sbjct: 3266723 ttgttgaaatttacaacgta 3266704
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>ref|XM_711024.1| Candida albicans SC5314 hypothetical protein (CaO19_7456), mRNA
          Length = 1065

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 352 gtatcgatttcttcaatttc 371
           ||||||||||||||||||||
Sbjct: 485 gtatcgatttcttcaatttc 466
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>gb|AC146269.3| Pan troglodytes BAC clone RP43-29B18 from 7, complete sequence
          Length = 178898

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 518    gactgagagaattttctcca 537
              ||||||||||||||||||||
Sbjct: 163548 gactgagagaattttctcca 163529
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>gb|AC125216.3| Mus musculus BAC clone RP23-109J14 from 1, complete sequence
          Length = 218169

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 658   cataagttgataaatctgtc 677
             ||||||||||||||||||||
Sbjct: 98774 cataagttgataaatctgtc 98755
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>gb|AC131676.2| Mus musculus BAC clone RP23-330L3 from chromosome 6, complete sequence
          Length = 200673

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 636   tcctttaaaataatcaatcttgca 659
             |||||||||||| |||||||||||
Sbjct: 78772 tcctttaaaatactcaatcttgca 78749
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>gb|AC005100.2| Homo sapiens BAC clone CTA-351O6 from 7, complete sequence
          Length = 139820

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 518   gactgagagaattttctcca 537
             ||||||||||||||||||||
Sbjct: 11432 gactgagagaattttctcca 11451
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>gb|AC004935.1| Homo sapiens PAC clone RP5-953F6 from 7, complete sequence
          Length = 98935

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 529   ttttctccactagctttagc 548
             ||||||||||||||||||||
Sbjct: 52002 ttttctccactagctttagc 51983
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>gb|U41542.2| Caenorhabditis elegans cosmid C07A12, complete sequence
          Length = 45529

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 596   cttggattaaaaagtttttt 615
             ||||||||||||||||||||
Sbjct: 23444 cttggattaaaaagtttttt 23425
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>emb|AL392167.7| Human DNA sequence from clone RP11-514M10 on chromosome 10, complete
              sequence
          Length = 191765

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 630    tggcattcctttaaaataat 649
              ||||||||||||||||||||
Sbjct: 134800 tggcattcctttaaaataat 134819
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>gb|AC095402.7| Rattus norvegicus 2 BAC CH230-7A22 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 224026

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 579   caaatcaaaatcacctcctt 598
             ||||||||||||||||||||
Sbjct: 45140 caaatcaaaatcacctcctt 45159
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>gb|AF273781.1| Caenorhabditis elegans clone yk215f10 nuclear receptor NHR-35 mRNA,
            partial cds
          Length = 1766

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 596  cttggattaaaaagtttttt 615
            ||||||||||||||||||||
Sbjct: 1561 cttggattaaaaagtttttt 1542
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>gb|AC011460.3| Homo sapiens chromosome 19 clone CTC-429C10, complete sequence
          Length = 131826

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 638   ctttaaaataatcaatcttg 657
             ||||||||||||||||||||
Sbjct: 79680 ctttaaaataatcaatcttg 79699
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>gb|AC112723.3| Homo sapiens BAC clone RP11-785D16 from 2, complete sequence
          Length = 144552

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 222   ttgagccttcttaagagtat 241
             ||||||||||||||||||||
Sbjct: 61309 ttgagccttcttaagagtat 61290
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>dbj|AP007150.1| Aspergillus oryzae RIB40 genomic DNA, SC009
          Length = 1913118

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 249     gatgacgattgatacaagta 268
               ||||||||||||||||||||
Sbjct: 1908027 gatgacgattgatacaagta 1908008
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>gb|DQ156349.1| Uncultured marine group II euryarchaeote HF70_39H11 clone fosmid
            HF70_39H11, complete sequence
          Length = 36119

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 342  atgctcatcggtatcgattt 361
            ||||||||||||||||||||
Sbjct: 2217 atgctcatcggtatcgattt 2236
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>dbj|AK032492.1| Mus musculus adult male olfactory brain cDNA, RIKEN full-length
            enriched library, clone:6430566J19
            product:unclassifiable, full insert sequence
          Length = 2694

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 658  cataagttgataaatctgtc 677
            ||||||||||||||||||||
Sbjct: 1074 cataagttgataaatctgtc 1093
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>ref|NM_001029194.1| Caenorhabditis elegans Nuclear Hormone Receptor family member
            (nhr-35) (nhr-35) mRNA, complete cds
          Length = 1905

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 596  cttggattaaaaagtttttt 615
            ||||||||||||||||||||
Sbjct: 1663 cttggattaaaaagtttttt 1644
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>gb|AC018880.6| Homo sapiens BAC clone RP11-336P15 from 2, complete sequence
          Length = 127025

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 491    tcccaatcatgaaggcctca 510
              ||||||||||||||||||||
Sbjct: 119542 tcccaatcatgaaggcctca 119523
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>gb|AC025097.41| Homo sapiens 12 BAC RP11-285E4 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 203530

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 56    aaaataaagcaaaggtataaattt 79
             ||||||||||||||||| ||||||
Sbjct: 93149 aaaataaagcaaaggtaaaaattt 93126
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>gb|AC109129.3| Homo sapiens 3 BAC RP11-784B9 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 181158

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 610    ttttttatgacatgacgaaatggcattc 637
              ||||||||||||||| ||||||| ||||
Sbjct: 110339 ttttttatgacatgaagaaatggaattc 110312
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>emb|BX936364.6| Zebrafish DNA sequence from clone CH211-247G11 in linkage group 18,
             complete sequence
          Length = 146733

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 636   tcctttaaaataatcaatct 655
             ||||||||||||||||||||
Sbjct: 49742 tcctttaaaataatcaatct 49761
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>emb|CR760038.2| Xenopus tropicalis finished cDNA, clone TNeu063g02
          Length = 1606

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 634  attcctttaaaataatcaat 653
            ||||||||||||||||||||
Sbjct: 1551 attcctttaaaataatcaat 1532
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>gb|AC117708.10| Mus musculus chromosome 7, clone RP23-474J16, complete sequence
          Length = 188333

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 407    acaaaatgatcttgtcactc 426
              ||||||||||||||||||||
Sbjct: 142139 acaaaatgatcttgtcactc 142120
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>gb|AE016879.1| Bacillus anthracis str. Ames, complete genome
          Length = 5227293

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 13      ttgttgaaatttacaacgta 32
               ||||||||||||||||||||
Sbjct: 3266030 ttgttgaaatttacaacgta 3266011
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>gb|AE008384.1| Methanosarcina mazei strain Goe1, complete genome
          Length = 4096345

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 114     caggaatcgccagaaagccc 133
               ||||||||||||||||||||
Sbjct: 2336355 caggaatcgccagaaagccc 2336336
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>gb|AC145956.4| Gallus gallus BAC clone CH261-14N1 from chromosome unknown, complete
              sequence
          Length = 243969

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 378    aatatcttctcccttgataa 397
              ||||||||||||||||||||
Sbjct: 224238 aatatcttctcccttgataa 224257
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>dbj|AP006423.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT23C14, TM0311,
             complete sequence
          Length = 82652

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                 
Query: 339   gtaatgctcatcggtatcgatttcttcaatttcctg 374
             |||||| ||||||||||| | |||||| ||||||||
Sbjct: 66138 gtaatgttcatcggtatccacttcttcgatttcctg 66173


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7,506,740
Number of Sequences: 3902068
Number of extensions: 7506740
Number of successful extensions: 148230
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 147837
Number of HSP's gapped (non-prelim): 393
length of query: 705
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 682
effective length of database: 17,143,297,704
effective search space: 11691729034128
effective search space used: 11691729034128
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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