ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags36d05 |
|---|---|
| Clone Library Name | barley_pub |
>NCPR_ASPNG (Q00141) NADPH--cytochrome P450 reductase (EC 1.6.2.4) (CPR)| (P450R) Length = 693 Score = 31.6 bits (70), Expect = 0.48 Identities = 28/89 (31%), Positives = 39/89 (43%), Gaps = 8/89 (8%) Frame = +3 Query: 72 MLQQAKLLSKISVLTSSTETCSILI-----YRSLAYKLFTS*VVA---IKTDMRLEDVKL 227 MLQ A+ L I+ S S+LI + Y + +S +V I +E V+L Sbjct: 416 MLQHAQALQSITSKPFSAVPFSLLIEGITKLQPRYYSISSSSLVQKDKISITAVVESVRL 475 Query: 228 PSVHHVQKNADTEYTPVRKIFATGRSLTR 314 P H+ K T Y K GRSL+R Sbjct: 476 PGASHMVKGVTTNYLLALKQKQNGRSLSR 504
>TBP_PYRKO (Q52366) TATA-box-binding protein (TATA-box factor) (TATA| sequence-binding protein) (TBP) (Box A-binding protein) (BAP) Length = 190 Score = 30.8 bits (68), Expect = 0.82 Identities = 12/28 (42%), Positives = 18/28 (64%) Frame = +2 Query: 266 IYSSKKDICNGEKFDQDSWHEWSKLFAE 349 ++SS K +C+G K +QD+W KL E Sbjct: 150 LFSSGKIVCSGAKSEQDAWEAVKKLLRE 177
>PCP2_THETN (Q8R9J6) Pyrrolidone-carboxylate peptidase 2 (EC 3.4.19.3)| (5-oxoprolyl-peptidase 2) (Pyroglutamyl-peptidase I 2) (PGP-I 2) (Pyrase 2) Length = 206 Score = 30.0 bits (66), Expect = 1.4 Identities = 14/44 (31%), Positives = 22/44 (50%) Frame = +2 Query: 8 PQYQXTXQITRKLQQVAKEKWHAATSKATFQDICTHIIYGNL*Y 139 P Y T I ++++ KE A+ S +C H++YG L Y Sbjct: 108 PAYFATIPIKEIVEEIKKENIPASISNTAGTYVCNHLMYGILNY 151
>PCP1_THETN (Q8RBX8) Pyrrolidone-carboxylate peptidase 1 (EC 3.4.19.3)| (5-oxoprolyl-peptidase 1) (Pyroglutamyl-peptidase I 1) (PGP-I 1) (Pyrase 1) Length = 203 Score = 30.0 bits (66), Expect = 1.4 Identities = 14/44 (31%), Positives = 22/44 (50%) Frame = +2 Query: 8 PQYQXTXQITRKLQQVAKEKWHAATSKATFQDICTHIIYGNL*Y 139 P Y T I ++ + KE A+ S + +C H++YG L Y Sbjct: 108 PAYFATIPIKEIVEAIKKENLPASVSNSAGTYVCNHLMYGILNY 151
>XYLH_SHIFL (P0AGI7) Xylose transport system permease protein xylH (EC| 3.6.3.17) Length = 393 Score = 29.3 bits (64), Expect = 2.4 Identities = 14/56 (25%), Positives = 30/56 (53%) Frame = -1 Query: 286 IFLTGVYSVSAFFCTWCTEGSFTSSRRISVLIATT*EVKSLYARDL*ISILQVSVD 119 + + + ++ FF TW T+G++ S+R +S L+ T + + A + I+ +D Sbjct: 31 VMIAAIIAIMLFF-TWTTDGAYLSARNVSNLLRQT-AITGILAVGMVFVIISAEID 84
>XYLH_ECOLI (P0AGI4) Xylose transport system permease protein xylH (EC| 3.6.3.17) Length = 393 Score = 29.3 bits (64), Expect = 2.4 Identities = 14/56 (25%), Positives = 30/56 (53%) Frame = -1 Query: 286 IFLTGVYSVSAFFCTWCTEGSFTSSRRISVLIATT*EVKSLYARDL*ISILQVSVD 119 + + + ++ FF TW T+G++ S+R +S L+ T + + A + I+ +D Sbjct: 31 VMIAAIIAIMLFF-TWTTDGAYLSARNVSNLLRQT-AITGILAVGMVFVIISAEID 84
>XYLH_ECOL6 (P0AGI5) Xylose transport system permease protein xylH (EC| 3.6.3.17) Length = 393 Score = 29.3 bits (64), Expect = 2.4 Identities = 14/56 (25%), Positives = 30/56 (53%) Frame = -1 Query: 286 IFLTGVYSVSAFFCTWCTEGSFTSSRRISVLIATT*EVKSLYARDL*ISILQVSVD 119 + + + ++ FF TW T+G++ S+R +S L+ T + + A + I+ +D Sbjct: 31 VMIAAIIAIMLFF-TWTTDGAYLSARNVSNLLRQT-AITGILAVGMVFVIISAEID 84
>XYLH_ECO57 (P0AGI6) Xylose transport system permease protein xylH (EC| 3.6.3.17) Length = 393 Score = 29.3 bits (64), Expect = 2.4 Identities = 14/56 (25%), Positives = 30/56 (53%) Frame = -1 Query: 286 IFLTGVYSVSAFFCTWCTEGSFTSSRRISVLIATT*EVKSLYARDL*ISILQVSVD 119 + + + ++ FF TW T+G++ S+R +S L+ T + + A + I+ +D Sbjct: 31 VMIAAIIAIMLFF-TWTTDGAYLSARNVSNLLRQT-AITGILAVGMVFVIISAEID 84
>NU1M_DROGU (P51931) NADH-ubiquinone oxidoreductase chain 1 (EC 1.6.5.3) (NADH| dehydrogenase subunit 1) (Fragments) Length = 163 Score = 28.5 bits (62), Expect = 4.1 Identities = 18/51 (35%), Positives = 26/51 (50%) Frame = -3 Query: 287 YLSYWSIFCISIFLHMVHRRKLHVLEAHICFNSYNLGGEEFVCQRSVN*YT 135 YLSY+ S+FL + + + NS+NLGG F+C S+ YT Sbjct: 72 YLSYYISPIFSLFLSLF---VWMCMPFFVKLNSFNLGGLFFLCCTSLGVYT 119
>TBP_THECE (Q56253) TATA-box-binding protein (TATA-box factor) (TATA| sequence-binding protein) (TBP) (Box A-binding protein) (BAP) Length = 189 Score = 28.5 bits (62), Expect = 4.1 Identities = 11/28 (39%), Positives = 17/28 (60%) Frame = +2 Query: 266 IYSSKKDICNGEKFDQDSWHEWSKLFAE 349 ++SS K +C+G K + D+W KL E Sbjct: 147 LFSSGKIVCSGAKSEHDAWEAVRKLLRE 174
>YFE2_YEAST (P43560) Hypothetical 76.3 kDa protein in SEC53-FET5 intergenic| region Length = 674 Score = 28.5 bits (62), Expect = 4.1 Identities = 10/22 (45%), Positives = 17/22 (77%) Frame = -3 Query: 242 MVHRRKLHVLEAHICFNSYNLG 177 ++++ KL++ E H+CFNS LG Sbjct: 225 LLYQGKLYITETHLCFNSNVLG 246
>ENO_SCHMA (Q27877) Enolase (EC 4.2.1.11) (2-phosphoglycerate dehydratase)| (2-phospho-D-glycerate hydro-lyase) Length = 434 Score = 28.5 bits (62), Expect = 4.1 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%) Frame = +2 Query: 209 PRGREASFGAPCAKKC*YRIYSSKKDICNGEK-FDQDSWHEWSKL 340 P E+++ +P A Y+ SK I + E FDQD W W KL Sbjct: 264 PHSAESTWLSPDAMANMYKQMISKFPIVSIEDPFDQDDWETWPKL 308
>TBP_PYRWO (P62001) TATA-box-binding protein (TATA-box factor) (TATA| sequence-binding protein) (TBP) (Box A-binding protein) (BAP) Length = 191 Score = 28.1 bits (61), Expect = 5.3 Identities = 11/28 (39%), Positives = 17/28 (60%) Frame = +2 Query: 266 IYSSKKDICNGEKFDQDSWHEWSKLFAE 349 ++SS K +C+G K + D+W KL E Sbjct: 150 LFSSGKIVCSGAKSEADAWEAVRKLLRE 177
>TBP_PYRHO (O58737) TATA-box-binding protein (TATA-box factor) (TATA| sequence-binding protein) (TBP) (Box A-binding protein) (BAP) Length = 191 Score = 28.1 bits (61), Expect = 5.3 Identities = 11/28 (39%), Positives = 17/28 (60%) Frame = +2 Query: 266 IYSSKKDICNGEKFDQDSWHEWSKLFAE 349 ++SS K +C+G K + D+W KL E Sbjct: 150 LFSSGKIVCSGAKSEADAWEAVRKLLRE 177
>TBP_PYRFU (P62000) TATA-box-binding protein (TATA-box factor) (TATA| sequence-binding protein) (TBP) (Box A-binding protein) (BAP) Length = 191 Score = 28.1 bits (61), Expect = 5.3 Identities = 11/28 (39%), Positives = 17/28 (60%) Frame = +2 Query: 266 IYSSKKDICNGEKFDQDSWHEWSKLFAE 349 ++SS K +C+G K + D+W KL E Sbjct: 150 LFSSGKIVCSGAKSEADAWEAVRKLLRE 177
>TBP_PYRAB (Q9V024) TATA-box-binding protein (TATA-box factor) (TATA| sequence-binding protein) (TBP) (Box A-binding protein) (BAP) Length = 191 Score = 28.1 bits (61), Expect = 5.3 Identities = 11/28 (39%), Positives = 17/28 (60%) Frame = +2 Query: 266 IYSSKKDICNGEKFDQDSWHEWSKLFAE 349 ++SS K +C+G K + D+W KL E Sbjct: 150 LFSSGKIVCSGAKSEADAWEAVRKLLRE 177
>HHAT_MOUSE (Q8BMT9) Protein-cysteine N-palmitoyltransferase HHAT (EC 2.3.1.-)| (Hedgehog acyltransferase) (Skinny hedgehog protein) Length = 499 Score = 28.1 bits (61), Expect = 5.3 Identities = 9/23 (39%), Positives = 13/23 (56%) Frame = -2 Query: 378 WMFVGHLAIFSANNLLHSCHESW 310 W+F+GH+A+ LL H W Sbjct: 73 WLFIGHMAVSQLATLLTKKHRPW 95
>NU1M_DROSU (P51937) NADH-ubiquinone oxidoreductase chain 1 (EC 1.6.5.3) (NADH| dehydrogenase subunit 1) Length = 312 Score = 27.7 bits (60), Expect = 7.0 Identities = 27/94 (28%), Positives = 40/94 (42%), Gaps = 3/94 (3%) Frame = -3 Query: 287 YLSYWSIFCISIFLHMVHRRKLHVLEAHICFNSYNLGGEEFVCQRSVN*YT---TSFRR* 117 YLSY+ S+FL + + + S+NLGG F+C S+ YT + Sbjct: 72 YLSYYISPIFSLFLSLF---VWMCMPFFVKLYSFNLGGLFFLCCTSLGVYTVMVAGWSSN 128 Query: 116 CEYRYLGK*LCLLQHAIFLWRLAVIYVLFVLXPG 15 Y LG + Q + LA+I + FV G Sbjct: 129 SNYALLGGLRAVAQTISYEVSLALILLSFVFLIG 162
>OR5L1_HUMAN (Q8NGL2) Olfactory receptor 5L1 (OST262)| Length = 311 Score = 27.7 bits (60), Expect = 7.0 Identities = 11/28 (39%), Positives = 18/28 (64%) Frame = -2 Query: 111 VQISWKVALLVAACHFSLATCCNLRVIC 28 V +SWKV + +A+C + T C+L +C Sbjct: 134 VTMSWKVRVELASCCYFCGTVCSLIHLC 161
>NU1M_DROYA (P07710) NADH-ubiquinone oxidoreductase chain 1 (EC 1.6.5.3) (NADH| dehydrogenase subunit 1) Length = 324 Score = 27.3 bits (59), Expect = 9.1 Identities = 26/94 (27%), Positives = 40/94 (42%), Gaps = 3/94 (3%) Frame = -3 Query: 287 YLSYWSIFCISIFLHMVHRRKLHVLEAHICFNSYNLGGEEFVCQRSVN*YT---TSFRR* 117 YLSY+ S+FL + + + S+NLGG F+C S+ YT + Sbjct: 72 YLSYYISPIFSLFLSLF---VWMCMPFFVKLYSFNLGGLFFLCCTSLGVYTVMVAGWSSN 128 Query: 116 CEYRYLGK*LCLLQHAIFLWRLAVIYVLFVLXPG 15 Y LG + Q + LA+I + F+ G Sbjct: 129 SNYALLGGLRAVAQTISYEVSLALIMLSFIFLIG 162
>NU1M_DROME (P18929) NADH-ubiquinone oxidoreductase chain 1 (EC 1.6.5.3) (NADH| dehydrogenase subunit 1) Length = 312 Score = 27.3 bits (59), Expect = 9.1 Identities = 26/94 (27%), Positives = 40/94 (42%), Gaps = 3/94 (3%) Frame = -3 Query: 287 YLSYWSIFCISIFLHMVHRRKLHVLEAHICFNSYNLGGEEFVCQRSVN*YT---TSFRR* 117 YLSY+ S+FL + + + S+NLGG F+C S+ YT + Sbjct: 72 YLSYYISPIFSLFLSLF---VWMCMPFFVKLYSFNLGGLFFLCCTSLGVYTVMVAGWSSN 128 Query: 116 CEYRYLGK*LCLLQHAIFLWRLAVIYVLFVLXPG 15 Y LG + Q + LA+I + F+ G Sbjct: 129 SNYALLGGLRAVAQTISYEVSLALILLSFIFLIG 162
>ETS3_DROME (P29774) DNA-binding protein D-ETS-3| Length = 490 Score = 27.3 bits (59), Expect = 9.1 Identities = 12/32 (37%), Positives = 14/32 (43%), Gaps = 3/32 (9%) Frame = -3 Query: 383 PXGCSWGTWRSFQQTTYSTHAMS---PGQTSP 297 P SWG W S Y H+MS P +P Sbjct: 450 PSAASWGNWGSPATNLYQPHSMSHVTPSHVAP 481
>YCF2_MARPO (P09975) Protein ycf2| Length = 2136 Score = 27.3 bits (59), Expect = 9.1 Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 1/54 (1%) Frame = -3 Query: 278 YWSIFCISIFLHMVHRRKLHVLEAHICFNSY-NLGGEEFVCQRSVN*YTTSFRR 120 YW IF + IF+ + +++ ++ CF+ + N +++ RS + Y T R Sbjct: 1185 YWVIFSLVIFIFLYYQKIFSIIIGSDCFHLWKNFEIIQYLTDRSRSLYFTKLTR 1238 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 57,153,137 Number of Sequences: 219361 Number of extensions: 1118908 Number of successful extensions: 2896 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 2827 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2896 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 1386249648 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
