Clone Information

BLAST Search Result

Clone Name	rbags35o05
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	PSD11_MOUSE (Q8BG32) 26S proteasome non-ATPase regulatory subuni...	141	1e-33
2	PSD11_HUMAN (O00231) 26S proteasome non-ATPase regulatory subuni...	141	2e-33
3	RPN6_SCHPO (Q9P7S2) Probable 26S proteasome regulatory subunit rpn6	137	4e-32
4	RPN6_YEAST (Q12377) 26S proteasome regulatory subunit RPN6 (Prot...	115	1e-25
5	YMJ5_CAEEL (P34481) Hypothetical protein F59B2.5	85	2e-16
6	CSN2_RAT (P61203) COP9 signalosome complex subunit 2 (Signalosom...	55	2e-07
7	CSN2_MOUSE (P61202) COP9 signalosome complex subunit 2 (Signalos...	55	2e-07
8	CSN2_HUMAN (P61201) COP9 signalosome complex subunit 2 (Signalos...	55	2e-07
9	CSN2_BRARE (Q6IQT4) COP9 signalosome complex subunit 2 (Signalos...	55	2e-07
10	CSN2_XENLA (Q6IR75) COP9 signalosome complex subunit 2 (Signalos...	55	2e-07
11	CSN2_DROME (Q94899) COP9 signalosome complex subunit 2 (Signalos...	51	3e-06
12	CSN2_ARATH (Q8W207) COP9 signalosome complex subunit 2 (Signalos...	47	4e-05
13	CSN1_CAEEL (Q9GS00) COP9 signalosome complex subunit 1 (Signalos...	45	1e-04
14	CSN1_ARATH (P45432) COP9 signalosome complex subunit 1 (CSN comp...	44	3e-04
15	CSN2_CAEEL (O01422) COP9 signalosome complex subunit 2 (Signalos...	44	3e-04
16	CSN2_SCHPO (Q9HFR0) COP9 signalosome complex subunit 2 (CSN comp...	40	0.004
17	CSN1_DROME (Q9VVU5) COP9 signalosome complex subunit 1b (Signalo...	40	0.006
18	CSN4_RAT (Q68FS2) COP9 signalosome complex subunit 4 (Signalosom...	35	0.19
19	CSN4_MOUSE (O88544) COP9 signalosome complex subunit 4 (Signalos...	35	0.19
20	CSN4_HUMAN (Q9BT78) COP9 signalosome complex subunit 4 (Signalos...	35	0.19
21	CSN4_DROME (Q9V345) COP9 signalosome complex subunit 4 (Signalos...	35	0.19
22	CSN4_BRARE (Q6P0H6) COP9 signalosome complex subunit 4 (Signalos...	34	0.32
23	CSN1_XENLA (Q6NRT5) COP9 signalosome complex subunit 1 (Signalos...	34	0.42
24	CSN1_HUMAN (Q13098) COP9 signalosome complex subunit 1 (Signalos...	34	0.42
25	IF38_CAEEL (O02328) Probable eukaryotic translation initiation f...	33	0.55
26	CSN1_MOUSE (Q99LD4) COP9 signalosome complex subunit 1 (Signalos...	33	0.93
27	CSN1_SCHPO (O94308) COP9 signalosome complex subunit 1 (CSN comp...	32	1.2
28	CSN1_RAT (P97834) COP9 signalosome complex subunit 1 (Signalosom...	32	1.2
29	PSD32_ARATH (Q9LQR8) Probable 26S proteasome non-ATPase regulato...	32	1.6
30	PSD31_ARATH (Q9LNU4) Probable 26S proteasome non-ATPase regulato...	32	1.6
31	Y614_METJA (Q58031) Hypothetical protein MJ0614	30	4.6
32	IF38_SCHPO (O14164) Probable eukaryotic translation initiation f...	30	4.6
33	AINX_HUMAN (Q16352) Alpha-internexin (Alpha-Inx) (66 kDa neurofi...	30	4.6
34	L_PI2HT (P26676) Large structural protein (Protein L) (Transcrip...	30	4.6
35	RPOC2_PROMM (Q7V5P3) DNA-directed RNA polymerase beta' chain (EC...	30	6.0
36	RPN5_SCHPO (Q9UTM3) 26S proteasome regulatory subunit rpn5	30	6.0
37	RPOC2_SYNPX (Q7U8K2) DNA-directed RNA polymerase beta' chain (EC...	30	6.0
38	RPOC2_PROMA (Q7VA30) DNA-directed RNA polymerase beta' chain (EC...	30	7.9
39	BBS10_HUMAN (Q8TAM1) Bardet-Biedl syndrome 10 protein	30	7.9
40	RSMC_BUCBP (Q89AI2) Ribosomal RNA small subunit methyltransferas...	30	7.9

>PSD11_MOUSE (Q8BG32) 26S proteasome non-ATPase regulatory subunit 11 (26S|
           proteasome regulatory subunit S9) (26S proteasome
           regulatory subunit p44.5)
          Length = 421

 Score =  141 bits (356), Expect = 1e-33
 Identities = 68/120 (56%), Positives = 91/120 (75%)
 Frame = -3

Query: 633 FETALRDFKSQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEIGHVAQMIELPVDHV 454
           FE AL D++++L +DPI+  HL+ LYD LLEQNL R+IEP+SRV+I H++ +I+L    V
Sbjct: 301 FEKALTDYRAELRDDPIISTHLAKLYDNLLEQNLIRVIEPFSRVQIEHISSLIKLSKADV 360

Query: 453 EKKLSQMILDKKFAGTLDQGAGCLIIFEDQKTEAIFPATLETISNVGKVVDSLYMRSAKI 274
           E+KLSQMILDKKF G LDQG G LIIF++   +  + A LETI N+ KVVDSLY ++ K+
Sbjct: 361 ERKLSQMILDKKFHGILDQGEGVLIIFDEPPVDKTYEAALETIQNMSKVVDSLYSKAKKL 420

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>PSD11_HUMAN (O00231) 26S proteasome non-ATPase regulatory subunit 11 (26S|
           proteasome regulatory subunit S9) (26S proteasome
           regulatory subunit p44.5)
          Length = 421

 Score =  141 bits (355), Expect = 2e-33
 Identities = 68/120 (56%), Positives = 91/120 (75%)
 Frame = -3

Query: 633 FETALRDFKSQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEIGHVAQMIELPVDHV 454
           FE AL D++++L +DPI+  HL+ LYD LLEQNL R+IEP+SRV+I H++ +I+L    V
Sbjct: 301 FEKALTDYRAELRDDPIISTHLAKLYDNLLEQNLIRVIEPFSRVQIEHISSLIKLSKADV 360

Query: 453 EKKLSQMILDKKFAGTLDQGAGCLIIFEDQKTEAIFPATLETISNVGKVVDSLYMRSAKI 274
           E+KLSQMILDKKF G LDQG G LIIF++   +  + A LETI N+ KVVDSLY ++ K+
Sbjct: 361 ERKLSQMILDKKFHGILDQGEGVLIIFDEPPVDKTYEAALETIQNMSKVVDSLYNKAKKL 420

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>RPN6_SCHPO (Q9P7S2) Probable 26S proteasome regulatory subunit rpn6|
          Length = 421

 Score =  137 bits (344), Expect = 4e-32
 Identities = 66/121 (54%), Positives = 87/121 (71%)
 Frame = -3

Query: 633 FETALRDFKSQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEIGHVAQMIELPVDHV 454
           FE AL+D+K +L  DPI+  HLSSLYD LLEQNL R++EP+SRVE+ H+A++I L    V
Sbjct: 300 FEKALQDYKPELASDPIIRSHLSSLYDNLLEQNLLRVVEPFSRVEVSHIAELIGLSTVQV 359

Query: 453 EKKLSQMILDKKFAGTLDQGAGCLIIFEDQKTEAIFPATLETISNVGKVVDSLYMRSAKI 274
           E KLSQMILDK F G LDQG+GCLI++++ + +  + A LE I N+G VVD L    A  
Sbjct: 360 EGKLSQMILDKIFYGILDQGSGCLIVYDEPQQDKTYEAALEVIKNMGTVVDLLIENKASA 419

Query: 273 M 271
           +
Sbjct: 420 L 420

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>RPN6_YEAST (Q12377) 26S proteasome regulatory subunit RPN6 (Proteasome|
           non-ATPase subunit 4)
          Length = 434

 Score =  115 bits (287), Expect = 1e-25
 Identities = 54/118 (45%), Positives = 79/118 (66%)
 Frame = -3

Query: 633 FETALRDFKSQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEIGHVAQMIELPVDHV 454
           F TAL+ ++ +L  D +   H ++LYDTLLE NLC++IEP+  VEI H++++I L    V
Sbjct: 314 FNTALKQYEKELMGDELTRSHFNALYDTLLESNLCKIIEPFECVEISHISKIIGLDTQQV 373

Query: 453 EKKLSQMILDKKFAGTLDQGAGCLIIFEDQKTEAIFPATLETISNVGKVVDSLYMRSA 280
           E KLSQMILDK F G LDQG G L ++E    +A + + LE +  + KVVD L+ +++
Sbjct: 374 EGKLSQMILDKIFYGVLDQGNGWLYVYETPNQDATYDSALELVGQLNKVVDQLFEKAS 431

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>YMJ5_CAEEL (P34481) Hypothetical protein F59B2.5|
          Length = 468

 Score = 84.7 bits (208), Expect = 2e-16
 Identities = 43/119 (36%), Positives = 72/119 (60%)
 Frame = -3

Query: 639 KYFETALRDFKSQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEIGHVAQMIELPVD 460
           K F  AL + K +L ED +V  H  +L   +LE+ + R+IEPYS +E+ ++A++I + V 
Sbjct: 346 KDFVKALAEHKIELVEDKVVAVHSQNLERNMLEKEISRVIEPYSEIELSYIARVIGMTVP 405

Query: 459 HVEKKLSQMILDKKFAGTLDQGAGCLIIFEDQKTEAIFPATLETISNVGKVVDSLYMRS 283
            VE+ +++MILDKK  G++DQ    ++++        F  +L+TI  + K VD  Y R+
Sbjct: 406 PVERAIARMILDKKLMGSIDQHGDTVVVYPKADAANQFTRSLKTIRELTKTVDVSYSRT 464

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>CSN2_RAT (P61203) COP9 signalosome complex subunit 2 (Signalosome subunit 2)|
           (SGN2) (JAB1-containing signalosome subunit 2) (Thyroid
           receptor-interacting protein 15) (Alien homolog)
          Length = 443

 Score = 55.1 bits (131), Expect = 2e-07
 Identities = 27/79 (34%), Positives = 43/79 (54%)
 Frame = -3

Query: 633 FETALRDFKSQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEIGHVAQMIELPVDHV 454
           FE  L+   S + +DP +  H+  L   +  Q L +LI+PY+R+ I  +++ + + V  V
Sbjct: 326 FEKILKTNHSNIMDDPFIREHIEELLRNIRTQVLIKLIKPYTRIHIPFISKELNIDVADV 385

Query: 453 EKKLSQMILDKKFAGTLDQ 397
           E  L Q ILD    G +DQ
Sbjct: 386 ESLLVQCILDNTIHGRIDQ 404

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>CSN2_MOUSE (P61202) COP9 signalosome complex subunit 2 (Signalosome subunit 2)|
           (SGN2) (JAB1-containing signalosome subunit 2) (Thyroid
           receptor-interacting protein 15) (Alien homolog)
          Length = 443

 Score = 55.1 bits (131), Expect = 2e-07
 Identities = 27/79 (34%), Positives = 43/79 (54%)
 Frame = -3

Query: 633 FETALRDFKSQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEIGHVAQMIELPVDHV 454
           FE  L+   S + +DP +  H+  L   +  Q L +LI+PY+R+ I  +++ + + V  V
Sbjct: 326 FEKILKTNHSNIMDDPFIREHIEELLRNIRTQVLIKLIKPYTRIHIPFISKELNIDVADV 385

Query: 453 EKKLSQMILDKKFAGTLDQ 397
           E  L Q ILD    G +DQ
Sbjct: 386 ESLLVQCILDNTIHGRIDQ 404

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>CSN2_HUMAN (P61201) COP9 signalosome complex subunit 2 (Signalosome subunit 2)|
           (SGN2) (JAB1-containing signalosome subunit 2) (Thyroid
           receptor-interacting protein 15) (Alien homolog)
          Length = 443

 Score = 55.1 bits (131), Expect = 2e-07
 Identities = 27/79 (34%), Positives = 43/79 (54%)
 Frame = -3

Query: 633 FETALRDFKSQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEIGHVAQMIELPVDHV 454
           FE  L+   S + +DP +  H+  L   +  Q L +LI+PY+R+ I  +++ + + V  V
Sbjct: 326 FEKILKTNHSNIMDDPFIREHIEELLRNIRTQVLIKLIKPYTRIHIPFISKELNIDVADV 385

Query: 453 EKKLSQMILDKKFAGTLDQ 397
           E  L Q ILD    G +DQ
Sbjct: 386 ESLLVQCILDNTIHGRIDQ 404

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>CSN2_BRARE (Q6IQT4) COP9 signalosome complex subunit 2 (Signalosome subunit 2)|
          Length = 443

 Score = 55.1 bits (131), Expect = 2e-07
 Identities = 27/79 (34%), Positives = 43/79 (54%)
 Frame = -3

Query: 633 FETALRDFKSQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEIGHVAQMIELPVDHV 454
           FE  L+   S + +DP +  H+  L   +  Q L +LI+PY+R+ I  +++ + + V  V
Sbjct: 326 FEKILKTNHSNIMDDPFIREHIEELLRNIRTQVLIKLIKPYTRIHIPFISKELNIDVADV 385

Query: 453 EKKLSQMILDKKFAGTLDQ 397
           E  L Q ILD    G +DQ
Sbjct: 386 ESLLVQCILDNTINGRIDQ 404

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>CSN2_XENLA (Q6IR75) COP9 signalosome complex subunit 2 (Signalosome subunit 2)|
           (Fragment)
          Length = 441

 Score = 55.1 bits (131), Expect = 2e-07
 Identities = 27/79 (34%), Positives = 43/79 (54%)
 Frame = -3

Query: 633 FETALRDFKSQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEIGHVAQMIELPVDHV 454
           FE  L+   S + +DP +  H+  L   +  Q L +LI+PY+R+ I  +++ + + V  V
Sbjct: 324 FEKILKTNHSNIMDDPFIREHIEELLRNIRTQVLIKLIKPYTRIHIPFISKELNIDVADV 383

Query: 453 EKKLSQMILDKKFAGTLDQ 397
           E  L Q ILD    G +DQ
Sbjct: 384 ESLLVQCILDNTIHGRIDQ 402

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>CSN2_DROME (Q94899) COP9 signalosome complex subunit 2 (Signalosome subunit 2)|
           (Dch2) (Alien protein)
          Length = 444

 Score = 50.8 bits (120), Expect = 3e-06
 Identities = 26/79 (32%), Positives = 37/79 (46%)
 Frame = -3

Query: 633 FETALRDFKSQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEIGHVAQMIELPVDHV 454
           FET LR  +S +  D  +  H+  L   +  Q L +LI PY  + I  +A  + +    V
Sbjct: 327 FETILRQHRSNIMADQFIREHIEDLLRNIRTQVLIKLIRPYKNIAIPFIANALNIEPAEV 386

Query: 453 EKKLSQMILDKKFAGTLDQ 397
           E  L   ILD    G +DQ
Sbjct: 387 ESLLVSCILDDTIKGRIDQ 405

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>CSN2_ARATH (Q8W207) COP9 signalosome complex subunit 2 (Signalosome subunit 2)|
           (FUSCA protein 12) (FUSCA12)
          Length = 439

 Score = 47.4 bits (111), Expect = 4e-05
 Identities = 21/79 (26%), Positives = 44/79 (55%)
 Frame = -3

Query: 633 FETALRDFKSQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEIGHVAQMIELPVDHV 454
           FE  L+  +  + +DP +  ++  L   +  Q L +LI+PY+++ I  +++ + +P   V
Sbjct: 322 FERILKSNRRTIMDDPFIRNYMEDLLKKVRTQVLLKLIKPYTKIGIPFISKELNVPETDV 381

Query: 453 EKKLSQMILDKKFAGTLDQ 397
            + L  +ILD +  G +D+
Sbjct: 382 TELLVSLILDSRIDGHIDE 400

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>CSN1_CAEEL (Q9GS00) COP9 signalosome complex subunit 1 (Signalosome subunit 1)|
          Length = 601

 Score = 45.4 bits (106), Expect = 1e-04
 Identities = 23/113 (20%), Positives = 57/113 (50%)
 Frame = -3

Query: 621 LRDFKSQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEIGHVAQMIELPVDHVEKKL 442
           +R  K +L  DP + R++  L++ + ++ + + ++PYS +++  +A+ + +    ++  L
Sbjct: 414 MRSVKPRLLLDPFISRNVDELFEKIRQKCVLQYLQPYSTIKMATMAEAVGMSSAELQLSL 473

Query: 441 SQMILDKKFAGTLDQGAGCLIIFEDQKTEAIFPATLETISNVGKVVDSLYMRS 283
            ++I  K  +  +DQ  G + I +++   AI      T     +   SL  ++
Sbjct: 474 LELIEQKHVSLKIDQNEGIVRILDERDENAILKRVNVTCDRATQKAKSLLWKT 526

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>CSN1_ARATH (P45432) COP9 signalosome complex subunit 1 (CSN complex subunit 1)|
           (Constitutive photomorphogenesis protein 11) (FUSCA
           protein 6) (FUSCA6)
          Length = 441

 Score = 44.3 bits (103), Expect = 3e-04
 Identities = 27/113 (23%), Positives = 52/113 (46%)
 Frame = -3

Query: 621 LRDFKSQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEIGHVAQMIELPVDHVEKKL 442
           L   KS L  D  +H H+ +LYD + ++ L +   P+  V++  +A   +  V  +EK+L
Sbjct: 314 LASLKSNLLLDIHLHDHVDTLYDQIRKKALIQYTLPFVSVDLSRMADAFKTSVSGLEKEL 373

Query: 441 SQMILDKKFAGTLDQGAGCLIIFEDQKTEAIFPATLETISNVGKVVDSLYMRS 283
             +I D +    +D     L      +  A F   L+  +   + V ++ +R+
Sbjct: 374 EALITDNQIQARIDSHNKILYARHADQRNATFQKVLQMGNEFDRDVRAMLLRA 426

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>CSN2_CAEEL (O01422) COP9 signalosome complex subunit 2 (Signalosome subunit 2)|
          Length = 495

 Score = 44.3 bits (103), Expect = 3e-04
 Identities = 23/91 (25%), Positives = 45/91 (49%)
 Frame = -3

Query: 633 FETALRDFKSQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEIGHVAQMIELPVDHV 454
           FE  +   +  +  DP +  H   L + +  Q L RLI PY+ V I +++Q +++    V
Sbjct: 326 FEQIMAAHQDSIMADPFIREHTEELMNNIRTQVLLRLIRPYTNVRISYLSQKLKVSQKEV 385

Query: 453 EKKLSQMILDKKFAGTLDQGAGCLIIFEDQK 361
              L   ILD      +++ +G + + +++K
Sbjct: 386 IHLLVDAILDDGLEAKINEESGMIEMPKNKK 416

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>CSN2_SCHPO (Q9HFR0) COP9 signalosome complex subunit 2 (CSN complex subunit 2)|
           (SGN2)
          Length = 437

 Score = 40.4 bits (93), Expect = 0.004
 Identities = 16/77 (20%), Positives = 45/77 (58%)
 Frame = -3

Query: 630 ETALRDFKSQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEIGHVAQMIELPVDHVE 451
           E  L+ ++  + +D  + +++  +  ++  Q L  L++PY+ V++  +A+ + + +  +E
Sbjct: 329 ERILQTYQHDILDDDFIRQYVDKILYSIRSQVLIELVKPYTSVKLSLLAKKLGVSISIIE 388

Query: 450 KKLSQMILDKKFAGTLD 400
           + L  +I+D++  G +D
Sbjct: 389 QALVGLIIDERVNGKID 405

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>CSN1_DROME (Q9VVU5) COP9 signalosome complex subunit 1b (Signalosome subunit|
           1b) (Dch1-2)
          Length = 525

 Score = 40.0 bits (92), Expect = 0.006
 Identities = 26/136 (19%), Positives = 57/136 (41%)
 Frame = -3

Query: 627 TALRDFKSQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEIGHVAQMIELPVDHVEK 448
           T L + +  L  D  +  H+++LY  +  + L +   PY   ++  +A      V  +E 
Sbjct: 372 TLLDEIRDNLLVDMYIAPHVTTLYTKIRNRALIQYFSPYMSADMHKMAMAFNSSVGDLEN 431

Query: 447 KLSQMILDKKFAGTLDQGAGCLIIFEDQKTEAIFPATLETISNVGKVVDSLYMRSAKIMA 268
           ++ Q+ILD +    +D     L   E  +  + F   L        ++   Y R  +++ 
Sbjct: 432 EVMQLILDGQIQARIDSHNKILFAKEADQRNSTFERAL--------IMGKQYQRHTRMLV 483

Query: 267 *RQPLRHVILHIDALA 220
            R  +    +H+ +++
Sbjct: 484 LRAAMLKSHIHVKSIS 499

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>CSN4_RAT (Q68FS2) COP9 signalosome complex subunit 4 (Signalosome subunit 4)|
           (SGN4) (JAB1-containing signalosome subunit 4)
          Length = 406

 Score = 35.0 bits (79), Expect = 0.19
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
 Frame = -3

Query: 567 SSLYD-TLLEQNLCRLIEPYSRVEIGHVAQMIELPVDHVEKKLSQMILDKKFAGTLDQGA 391
           SS+ D  ++E NL    + Y+ +    +  ++E+P    EK  SQMI + +  G +DQ  
Sbjct: 297 SSILDRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQID 356

Query: 390 GCLIIFEDQK 361
           G ++ FE ++
Sbjct: 357 G-IVHFETRE 365

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>CSN4_MOUSE (O88544) COP9 signalosome complex subunit 4 (Signalosome subunit 4)|
           (SGN4) (JAB1-containing signalosome subunit 4)
          Length = 406

 Score = 35.0 bits (79), Expect = 0.19
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
 Frame = -3

Query: 567 SSLYD-TLLEQNLCRLIEPYSRVEIGHVAQMIELPVDHVEKKLSQMILDKKFAGTLDQGA 391
           SS+ D  ++E NL    + Y+ +    +  ++E+P    EK  SQMI + +  G +DQ  
Sbjct: 297 SSILDRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQID 356

Query: 390 GCLIIFEDQK 361
           G ++ FE ++
Sbjct: 357 G-IVHFETRE 365

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>CSN4_HUMAN (Q9BT78) COP9 signalosome complex subunit 4 (Signalosome subunit 4)|
           (SGN4) (JAB1-containing signalosome subunit 4)
          Length = 406

 Score = 35.0 bits (79), Expect = 0.19
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
 Frame = -3

Query: 567 SSLYD-TLLEQNLCRLIEPYSRVEIGHVAQMIELPVDHVEKKLSQMILDKKFAGTLDQGA 391
           SS+ D  ++E NL    + Y+ +    +  ++E+P    EK  SQMI + +  G +DQ  
Sbjct: 297 SSILDRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQID 356

Query: 390 GCLIIFEDQK 361
           G ++ FE ++
Sbjct: 357 G-IVHFETRE 365

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>CSN4_DROME (Q9V345) COP9 signalosome complex subunit 4 (Signalosome subunit 4)|
           (Dch4)
          Length = 407

 Score = 35.0 bits (79), Expect = 0.19
 Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
 Frame = -3

Query: 633 FETALRDFKSQLEEDPIVHRHLSSLYD-TLLEQNLCRLIEPYSRVEIGHVAQMIELPVDH 457
           FE  L+D +     D       SS+ D  + E NL    + Y+ +    +  ++++P   
Sbjct: 288 FEALLQDHQKAATSDG------SSILDRAVFEHNLLSASKLYNNITFEELGALLDIPAVK 341

Query: 456 VEKKLSQMILDKKFAGTLDQGAGCLIIFEDQK 361
            EK  SQMI + +  G +DQ    ++ FE+++
Sbjct: 342 AEKIASQMITEGRMNGHIDQ-ISAIVHFENRE 372

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>CSN4_BRARE (Q6P0H6) COP9 signalosome complex subunit 4 (Signalosome subunit 4)|
          Length = 406

 Score = 34.3 bits (77), Expect = 0.32
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
 Frame = -3

Query: 567 SSLYD-TLLEQNLCRLIEPYSRVEIGHVAQMIELPVDHVEKKLSQMILDKKFAGTLDQGA 391
           SS+ D  ++E NL    + Y+ +    +  ++E+P    EK  SQMI + +  G +DQ  
Sbjct: 297 SSILDRAVIEHNLLSASKLYNNITFEELGALLEIPPAKAEKIASQMITEGRMNGFIDQID 356

Query: 390 GCLIIFEDQK 361
           G ++ FE ++
Sbjct: 357 G-IVHFETRE 365

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>CSN1_XENLA (Q6NRT5) COP9 signalosome complex subunit 1 (Signalosome subunit 1)|
          Length = 487

 Score = 33.9 bits (76), Expect = 0.42
 Identities = 23/114 (20%), Positives = 49/114 (42%)
 Frame = -3

Query: 621 LRDFKSQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEIGHVAQMIELPVDHVEKKL 442
           L + K  L  D  +  H+ +LY  +  + L +   PY   ++  +A      V  +E +L
Sbjct: 341 LDEIKDNLLLDMYLAPHVRTLYTQIRNRALIQYFSPYVSADMYKMATAFNTTVSALEDEL 400

Query: 441 SQMILDKKFAGTLDQGAGCLIIFEDQKTEAIFPATLETISNVGKVVDSLYMRSA 280
           +Q+IL+      +D  +  L   +  +    F  +L+      +   ++ +R+A
Sbjct: 401 TQLILEGLINARIDSHSKILYARDVDQRSTTFEKSLQMGREFQRRAKAMILRAA 454

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>CSN1_HUMAN (Q13098) COP9 signalosome complex subunit 1 (Signalosome subunit 1)|
           (SGN1) (JAB1-containing signalosome subunit 1) (G
           protein pathway suppressor 1) (GPS1 protein) (MFH
           protein)
          Length = 471

 Score = 33.9 bits (76), Expect = 0.42
 Identities = 27/130 (20%), Positives = 54/130 (41%)
 Frame = -3

Query: 621 LRDFKSQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEIGHVAQMIELPVDHVEKKL 442
           L + K  L  D  +  H+ +LY  +  + L +   PY   ++  +A      V  +E +L
Sbjct: 325 LDEMKDNLLLDMYLAPHVRTLYTQIRNRALIQYFSPYVSADMHRMAAAFNTTVAALEDEL 384

Query: 441 SQMILDKKFAGTLDQGAGCLIIFEDQKTEAIFPATLETISNVGKVVDSLYMRSAKIMA*R 262
           +Q+IL+   +  +D  +  L   +  +    F  +L        ++   + R AK M  R
Sbjct: 385 TQLILEGLISARVDSHSKILYARDVDQRSTTFEKSL--------LMGKEFQRRAKAMMLR 436

Query: 261 QPLRHVILHI 232
             +    +H+
Sbjct: 437 AAVLRNQIHV 446

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>IF38_CAEEL (O02328) Probable eukaryotic translation initiation factor 3|
           subunit 8 (eIF3 p110) (eIF3c)
          Length = 898

 Score = 33.5 bits (75), Expect = 0.55
 Identities = 15/46 (32%), Positives = 27/46 (58%)
 Frame = -3

Query: 513 YSRVEIGHVAQMIELPVDHVEKKLSQMILDKKFAGTLDQGAGCLII 376
           Y+ V +  +A + EL    V   +S+MI+ ++ + TLD+   CLI+
Sbjct: 756 YATVSLKKLADLFELSKKDVHSIISKMIIQEELSATLDEPTDCLIM 801

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>CSN1_MOUSE (Q99LD4) COP9 signalosome complex subunit 1 (Signalosome subunit 1)|
           (SGN1) (JAB1-containing signalosome subunit 1) (G
           protein pathway suppressor 1) (GPS1 protein)
          Length = 471

 Score = 32.7 bits (73), Expect = 0.93
 Identities = 27/130 (20%), Positives = 53/130 (40%)
 Frame = -3

Query: 621 LRDFKSQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEIGHVAQMIELPVDHVEKKL 442
           L + K  L  D  +  H+ +LY  +  + L +   PY   ++  +A      V  +E +L
Sbjct: 325 LDEMKDNLLLDMYLAPHVRTLYTQIRNRALIQYFSPYVSADMHKMAAAFNTTVAALEDEL 384

Query: 441 SQMILDKKFAGTLDQGAGCLIIFEDQKTEAIFPATLETISNVGKVVDSLYMRSAKIMA*R 262
           +Q+IL+      +D  +  L   +  +    F  +L        ++   + R AK M  R
Sbjct: 385 TQLILEGLINARIDSHSKILYARDVDQRSTTFEKSL--------LMGKEFQRRAKAMILR 436

Query: 261 QPLRHVILHI 232
             +    +H+
Sbjct: 437 AAVLRNQIHV 446

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>CSN1_SCHPO (O94308) COP9 signalosome complex subunit 1 (CSN complex subunit 1)|
           (SGN1)
          Length = 422

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 16/57 (28%), Positives = 31/57 (54%)
 Frame = -3

Query: 570 LSSLYDTLLEQNLCRLIEPYSRVEIGHVAQMIELPVDHVEKKLSQMILDKKFAGTLD 400
           L++L+  + E++L   + PYS +    +A    +  + +EK L ++I  KK  G +D
Sbjct: 300 LTNLFSLIRERSLLDYLIPYSALPFSKIAVDFHIDENFIEKNLLEIIEAKKLNGKVD 356

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>CSN1_RAT (P97834) COP9 signalosome complex subunit 1 (Signalosome subunit 1)|
           (SGN1) (JAB1-containing signalosome subunit 1) (G
           protein pathway suppressor 1) (MFH protein)
          Length = 471

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 27/130 (20%), Positives = 53/130 (40%)
 Frame = -3

Query: 621 LRDFKSQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEIGHVAQMIELPVDHVEKKL 442
           L + K  L  D  +  H+ +LY  +  + L +   PY   ++  +A      V  +E +L
Sbjct: 325 LDEMKDNLLLDMYLAPHVRTLYTQIRNRALIQYFSPYVSADMHKMAAAFNTTVAALEDEL 384

Query: 441 SQMILDKKFAGTLDQGAGCLIIFEDQKTEAIFPATLETISNVGKVVDSLYMRSAKIMA*R 262
           +Q+IL+      +D  +  L   +  +    F  +L        ++   + R AK M  R
Sbjct: 385 TQVILEGLINARIDSHSKILYARDVDQRSTTFEKSL--------LMGKEFQRRAKAMILR 436

Query: 261 QPLRHVILHI 232
             +    +H+
Sbjct: 437 AAVLRNQIHV 446

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>PSD32_ARATH (Q9LQR8) Probable 26S proteasome non-ATPase regulatory subunit 3b|
           (26S proteasome subunit S3-b)
          Length = 487

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 26/112 (23%), Positives = 47/112 (41%), Gaps = 4/112 (3%)
 Frame = -3

Query: 579 HRHLSSLYDTLLEQNLCRLIEPYSRVEIGHVAQMIEL----PVDHVEKKLSQMILDKKFA 412
           H  +  L   ++   L  +   YSR+ +  VAQ + L    PV   E  +++ I D    
Sbjct: 344 HNLIVRLRHNVIRTGLRNISISYSRISLQDVAQKLRLNSANPVADAESIVAKAIRDGAID 403

Query: 411 GTLDQGAGCLIIFEDQKTEAIFPATLETISNVGKVVDSLYMRSAKIMA*RQP 256
            T+D   GC++    ++T  I+       +   ++   L M +  + A R P
Sbjct: 404 ATIDHKNGCMV---SKETGDIYSTNEPQTAFNSRIAFCLNMHNEAVRALRFP 452

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>PSD31_ARATH (Q9LNU4) Probable 26S proteasome non-ATPase regulatory subunit 3a|
           (26S proteasome subunit S3-a)
          Length = 488

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 29/130 (22%), Positives = 52/130 (40%), Gaps = 4/130 (3%)
 Frame = -3

Query: 633 FETALRDFKSQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEIGHVAQMIEL----P 466
           F T    F     +D   H  +  L   ++   L  +   YSR+ +  VA+ + L    P
Sbjct: 328 FRTVQEKFLDTFAQDR-THNLIVRLRHNVIRTGLRNISISYSRISLPDVAKKLRLNSENP 386

Query: 465 VDHVEKKLSQMILDKKFAGTLDQGAGCLIIFEDQKTEAIFPATLETISNVGKVVDSLYMR 286
           V   E  +++ I D     T+D   GC++    ++T  I+       +   ++   L M 
Sbjct: 387 VADAESIVAKAIRDGAIDATIDHKNGCMV---SKETGDIYSTNEPQTAFNSRIAFCLNMH 443

Query: 285 SAKIMA*RQP 256
           +  + A R P
Sbjct: 444 NEAVRALRFP 453

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>Y614_METJA (Q58031) Hypothetical protein MJ0614|
          Length = 130

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
 Frame = -3

Query: 525 LIEPYSRVEIGH---VAQMIELPVDHVEKKLSQMILDKKFAGTLDQG--AGCLIIFEDQK 361
           LI PY R  +GH   V + + +P+D VE+++   +    F G + +G   G L+I   +K
Sbjct: 70  LICPYGRHRVGHVVAVGEEVPMPID-VEREVDMAMFACGFEGEVKKGDLIGMLLILAAEK 128

Query: 360 TE 355
            E
Sbjct: 129 RE 130

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>IF38_SCHPO (O14164) Probable eukaryotic translation initiation factor 3 93 kDa|
            subunit (eIF3 p93)
          Length = 918

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
 Frame = -3

Query: 513  YSRVEIGHVAQMIELPVDHVEKKLSQMILDKKFAGTLDQGAGCLII--FEDQKTEAIFPA 340
            Y  V +  +A   +LPV  V   +S+++  ++    LDQ  G +I    E  K E++  +
Sbjct: 806  YDSVSLEFLATTFDLPVQRVTVIVSRLLSKREIHAALDQVHGAIIFERVEINKLESLTVS 865

Query: 339  TLETISNVGKVVDSLY 292
              E  + + +  + LY
Sbjct: 866  LSEKTAQLNEANEKLY 881

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>AINX_HUMAN (Q16352) Alpha-internexin (Alpha-Inx) (66 kDa neurofilament|
           protein) (Neurofilament-66) (NF-66)
          Length = 499

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 40/151 (26%), Positives = 60/151 (39%), Gaps = 5/151 (3%)
 Frame = -3

Query: 633 FETALRDFKSQLEEDPIVHRHLSSLYDTLLE--QNLCRLIEPYSRVEIGHVAQMIELPVD 460
           F+  LRD ++QLEE            D L E  Q L    E  SR   G    +     D
Sbjct: 143 FQRELRDLRAQLEEASSARSQALLERDGLAEEVQRLRARCEEESRGREGAERALKAQQRD 202

Query: 459 HVEKKLSQMILDKKFAGTLDQGAGCLIIFEDQKTEAIFPATLETISNVGKVVDSLYMRSA 280
                L+++ L+KK    LD+ A    + +++  E +  ATL+  S     VD    +  
Sbjct: 203 VDGATLARLDLEKKVESLLDELAFVRQVHDEEVAELL--ATLQASSQAAAEVDVTVAKPD 260

Query: 279 KIMA*RQPLRHVILHIDALACDSL---TVWY 196
              A    LR +    ++LA  +L     WY
Sbjct: 261 LTSA----LREIRAQYESLAAKNLQSAEEWY 287

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>L_PI2HT (P26676) Large structural protein (Protein L) (Transcriptase)|
            (Replicase) [Includes: RNA-directed RNA polymerase (EC
            2.7.7.48); mRNA (guanine-N(7)-)-methyltransferase (EC
            2.1.1.56); mRNA guanylyltransferase (EC 2.7.7.-)]
          Length = 2262

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 20/61 (32%), Positives = 28/61 (45%)
 Frame = -3

Query: 639  KYFETALRDFKSQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEIGHVAQMIELPVD 460
            +Y  T+  +   QLE D I+H  L++ YD     N  R I P+         +   LPVD
Sbjct: 1701 QYIITSYYESFEQLETDIILHSTLTAPYDNSENSNKVRFI-PFDIFPHPESLEKYPLPVD 1759

Query: 459  H 457
            H
Sbjct: 1760 H 1760

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>RPOC2_PROMM (Q7V5P3) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
            beta' subunit) (Transcriptase beta' chain) (RNA
            polymerase beta' subunit)
          Length = 1374

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 20/73 (27%), Positives = 36/73 (49%)
 Frame = +1

Query: 277  LGRPHVKTVHDLSNIRNGFQCSREDGLCLLILKDDEATSTLIQSTSKFLV*NHLRQLLLN 456
            LGRP++ +   + ++R+G    R DGL LL+  + + T  ++Q   +      + +LL  
Sbjct: 980  LGRPYMVSPDSVLHVRDGDLVQRGDGLALLVF-ERQKTGDIVQGLPR------IEELLEA 1032

Query: 457  MINRQFNHLCNMP 495
               R+   LC  P
Sbjct: 1033 RRPRESAVLCKKP 1045

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>RPN5_SCHPO (Q9UTM3) 26S proteasome regulatory subunit rpn5|
          Length = 443

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 19/93 (20%), Positives = 39/93 (41%)
 Frame = -3

Query: 633 FETALRDFKSQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEIGHVAQMIELPVDHV 454
           + +ALR      E D    +  S L   ++E N+  +   YSR+    +  ++++     
Sbjct: 312 YGSALRSNPVFAENDEKGEKRWSELRKRVIEHNIRVVANYYSRIHCSRLGVLLDMSPSET 371

Query: 453 EKKLSQMILDKKFAGTLDQGAGCLIIFEDQKTE 355
           E+ L  +I    F   +D+ A  +   + Q  +
Sbjct: 372 EQFLCDLIAKHHFYAKIDRPAQVISFKKSQNVQ 404

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>RPOC2_SYNPX (Q7U8K2) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
            beta' subunit) (Transcriptase beta' chain) (RNA
            polymerase beta' subunit)
          Length = 1364

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 20/73 (27%), Positives = 36/73 (49%)
 Frame = +1

Query: 277  LGRPHVKTVHDLSNIRNGFQCSREDGLCLLILKDDEATSTLIQSTSKFLV*NHLRQLLLN 456
            LGRP++ +   + ++R+G    R DGL LL+  + + T  ++Q   +      + +LL  
Sbjct: 972  LGRPYMVSPDSVLHVRDGDLVQRGDGLALLVF-ERQKTGDIVQGLPR------IEELLEA 1024

Query: 457  MINRQFNHLCNMP 495
               R+   LC  P
Sbjct: 1025 RRPRESAVLCKKP 1037

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>RPOC2_PROMA (Q7VA30) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
            beta' subunit) (Transcriptase beta' chain) (RNA
            polymerase beta' subunit)
          Length = 1367

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 14/43 (32%), Positives = 26/43 (60%)
 Frame = +1

Query: 277  LGRPHVKTVHDLSNIRNGFQCSREDGLCLLILKDDEATSTLIQ 405
            LGRP++ +   + +++NG    R DGL LL+  + + T  ++Q
Sbjct: 972  LGRPYMVSPDSVLHVKNGDLVQRGDGLALLVF-ERQKTGDIVQ 1013

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>BBS10_HUMAN (Q8TAM1) Bardet-Biedl syndrome 10 protein|
          Length = 723

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 9/104 (8%)
 Frame = -3

Query: 639 KYFETALRDFKSQLEE---DPIVHRHLSSLYDTLLEQNLCR-----LIEPYSRVEIGHVA 484
           K+   AL  F++Q+ +   D  + RH  S++ +  E+ LCR     L+E Y    +G   
Sbjct: 127 KFISQALLTFQTQILDGIMDQYLSRHFLSIFSSAKERTLCRSSLELLLEAYFCGRVGR-- 184

Query: 483 QMIELPVDHVEKKLSQMILDKKF-AGTLDQGAGCLIIFEDQKTE 355
                   +  K +SQ++ D  F   T   G G   + +D   E
Sbjct: 185 --------NNHKFISQLMCDYFFKCMTCKSGIGVFELVDDHFVE 220

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>RSMC_BUCBP (Q89AI2) Ribosomal RNA small subunit methyltransferase C (EC|
           2.1.1.52) (rRNA (guanine-N(2)-)-methyltransferase) (16S
           rRNA m2G1207 methyltransferase)
          Length = 326

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 25/74 (33%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
 Frame = -3

Query: 636 YFETALRDFKSQLEEDPIVHRHLSSLYDTLLEQNLCRLIEP---YSRVEIGHVAQMIELP 466
           Y  T   + K  L +  I     S L  TL   N+C  I P   YS V   +   +I  P
Sbjct: 198 YLATIFPEIKLTLIDSNIAALESSKL--TLTSNNVCGEIFPSNIYSNVHYQNFDLIISNP 255

Query: 465 VDHVEKKLSQMILD 424
             HVE KL+  I+D
Sbjct: 256 PLHVENKLNFSIID 269


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,416,893
Number of Sequences: 219361
Number of extensions: 2076508
Number of successful extensions: 5145
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 4916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5144
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 5972710590
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result