>RPOC2_ODOSI (P49468) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6)|
           (PEP) (Plastid-encoded RNA polymerase beta'' subunit)
           (RNA polymerase beta'' subunit)
          Length = 1481

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 231 WSMICYLSLRFCTLAHHLSYLGYQ 160
           WS   Y S++ C+LA  L YLG++
Sbjct: 22  WSFTTYDSMQACSLADELKYLGFK 45

>YGL1_SCHPO (Q9Y7J8) Hypothetical protein C216.01c in chromosome II|
          Length = 836

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = +1

Query: 193 GTEPQTQVADHAPRFFWEKLERMADLEXANSTISXSAVSK 312
           G++    + DH P   W+K ++  D + A+S++S + VS+
Sbjct: 419 GSDILVSIIDHEPAIVWQKFDQ--DRKDASSSLSNAHVSQ 456

>CCMA_RHOPA (Q6NDA6) Cytochrome c biogenesis ATP-binding export protein ccmA|
           (EC 3.6.3.41) (Heme exporter protein A)
          Length = 200

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +1

Query: 145 LIA*LLVPQIG*MVCKGTEPQTQVADHA 228
           LIA LL P+ G +   G EP T VA+ A
Sbjct: 47  LIAGLLTPEAGTITLDGGEPDTPVAEQA 74

>YCF2_NYMAL (Q6EVY7) Protein ycf2|
          Length = 2253

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -1

Query: 197  VPLHTIYPIWGTSNYAISSGCRQNIIIQSELL 102
            +PL  I P W   +  ISS C QNI++  E++
Sbjct: 1249 IPLWAILPRWNLIS-EISSKCLQNILLPEEMI 1279

>RFX1_YEAST (P48743) RFX-like DNA-binding protein RFX1|
          Length = 811

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = -2

Query: 229 EHDLLPEFEVLYPCTPSILFGVPAIMQSAVVVDKIS*YNLNC*RTWECI 83
           EH LL  +++ +P  P+ +  +P    S V+    S Y+++C   +ECI
Sbjct: 495 EHPLLTSYKLDFPKIPAGV--LPTDTDSDVISSLESLYHIHCNSVYECI 541


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,789,041
Number of Sequences: 219361
Number of extensions: 766240
Number of successful extensions: 1982
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1982
length of database: 80,573,946
effective HSP length: 88
effective length of database: 61,270,178
effective search space used: 1470484272
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)