| Clone Name | rbags35n24 |
|---|---|
| Clone Library Name | barley_pub |
>COI1_ARATH (O04197) Coronatine-insensitive protein 1 (F-box/LRR-repeat protein| 2) (AtFBL2) (COI-1) (AtCOI1) Length = 592 Score = 125 bits (313), Expect = 1e-28 Identities = 63/121 (52%), Positives = 79/121 (65%), Gaps = 7/121 (5%) Frame = -1 Query: 623 SDQGLIRFAIGCTNLRKLELRSCCFSEQALSLAVLHMPSLRYIWVQGYKASPAGLELLLM 444 SD+GL+ F+ GC NL+KLE+R CCFSE+A++ AV +PSLRY+WVQGY+AS G +L+ M Sbjct: 476 SDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQM 535 Query: 443 ARPFWNIEFTPP-------SPGGLHRMTLDREPCGERQAQVLAYYSLAGQRQDCPDWVTP 285 ARP+WNIE P G + M E A +LAYYSLAGQR DCP V Sbjct: 536 ARPYWNIELIPSRRVPEVNQQGEIREM--------EHPAHILAYYSLAGQRTDCPTTVRV 587 Query: 284 L 282 L Sbjct: 588 L 588
>TIR1_ARATH (Q570C0) TRANSPORT INHIBITOR RESPONSE 1 protein (F-box/LRR-repeat| protein 1) Length = 594 Score = 51.6 bits (122), Expect = 2e-06 Identities = 34/111 (30%), Positives = 50/111 (45%) Frame = -1 Query: 623 SDQGLIRFAIGCTNLRKLELRSCCFSEQALSLAVLHMPSLRYIWVQGYKASPAGLELLLM 444 SD G+ GC +LRKLE+R C F ++AL + ++R +W+ S +LL Sbjct: 469 SDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQ 528 Query: 443 ARPFWNIEFTPPSPGGLHRMTLDREPCGERQAQVLAYYSLAGQRQDCPDWV 291 P N+E R D P +V Y ++AG R D P +V Sbjct: 529 KMPKLNVEVID------ERGAPDSRPESCPVERVFIYRTVAGPRFDMPGFV 573
>FBXL7_HUMAN (Q9UJT9) F-box/LRR-repeat protein 7 (F-box and leucine-rich repeat| protein 7) (F-box protein FBL6/FBL7) Length = 491 Score = 32.0 bits (71), Expect = 1.5 Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 1/74 (1%) Frame = -1 Query: 623 SDQGLIRFAIGCTNLRKLELRSC-CFSEQALSLAVLHMPSLRYIWVQGYKASPAGLELLL 447 SD GL A+ C NL++L L+SC + Q L + + L+ + VQ + S L + Sbjct: 416 SDTGLECLALNCFNLKRLSLKSCESITGQGLQIVAANCFDLQTLNVQDCEVSVEALRFVK 475 Query: 446 MARPFWNIEFTPPS 405 IE T P+ Sbjct: 476 RHCKRCVIEHTNPA 489
>FXL17_HUMAN (Q9UF56) F-box/LRR-repeat protein 17 (F-box and leucine-rich repeat| protein 17) (F-box only protein 13) (Fragment) Length = 370 Score = 31.6 bits (70), Expect = 2.0 Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 1/56 (1%) Frame = -1 Query: 623 SDQGLIRFAIGCTNLRKLELR-SCCFSEQALSLAVLHMPSLRYIWVQGYKASPAGL 459 SD+G+I A GC L+++ ++ + ++Q++ H P L+Y+ G + G+ Sbjct: 147 SDEGMIVIAKGCLKLQRIYMQENKLVTDQSVKAFAEHCPELQYVGFMGCSVTSKGV 202
>SULF1_DROME (Q9VEX0) Extracellular sulfatase SULF-1 homolog precursor (EC| 3.1.6.-) (DmSulf-1) Length = 1114 Score = 31.2 bits (69), Expect = 2.6 Identities = 17/46 (36%), Positives = 22/46 (47%) Frame = +1 Query: 325 RE*YARTWACLSPQGSRSSVMRCRPPGLGGVNSMFQNGLAMRRSSR 462 R+ Y R AC +P G + +R GL VN NG RR+ R Sbjct: 598 RKQYQRNCACFTPDGVVYTKIRAPSAGLHRVNKRTHNGPGRRRNKR 643
>ASP_ANCCA (Q16937) Ancylostoma secreted protein precursor| Length = 424 Score = 30.8 bits (68), Expect = 3.4 Identities = 16/57 (28%), Positives = 25/57 (43%) Frame = +1 Query: 286 GVTQSGQSCLCPARE*YARTWACLSPQGSRSSVMRCRPPGLGGVNSMFQNGLAMRRS 456 GV S L PA+ Y +W C Q + ++ C P G+ + QN ++ S Sbjct: 54 GVEDSNSGKLNPAKNMYKLSWDCAMEQQLQDAIQSC-PSAFAGIQGVAQNVMSWSSS 109
>PLXB2_HUMAN (O15031) Plexin-B2 precursor (MM1)| Length = 1838 Score = 30.4 bits (67), Expect = 4.5 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%) Frame = +3 Query: 246 MSCIYNQ-SCSWMQRSHPVRAVLPLPSKGVVRENL 347 +SC+ N+ +C W R H R P P G+VR ++ Sbjct: 628 ISCVSNRWTCQWDLRYHECREASPNPEDGIVRAHM 662
>MYB1_NEUCR (O13493) Myb-like DNA binding protein myb-1| Length = 324 Score = 30.4 bits (67), Expect = 4.5 Identities = 23/72 (31%), Positives = 30/72 (41%), Gaps = 4/72 (5%) Frame = -3 Query: 594 RMHQPAEA*ASELLLQRASSFPRG---APYAVAQ-VHMGARL*GLPSRPRAPSHGEAILE 427 R P AS++L PR P Q ++ G+R RP +PS L Sbjct: 115 RQSAPRRVSASDVLRSSPGQLPRAHMQRPIRYPQDIYTGSR------RPSSPSSFNDSLH 168 Query: 426 HRVHASEPWRPA 391 HRVH S W P+ Sbjct: 169 HRVHESIEWFPS 180
>SYL_CHLPN (Q9Z930) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)| (LeuRS) Length = 820 Score = 30.0 bits (66), Expect = 5.8 Identities = 28/108 (25%), Positives = 41/108 (37%), Gaps = 17/108 (15%) Frame = +3 Query: 219 DTYVRTHNLMSCIYNQSCSWMQRSHPVRAVLPLPSKGVVRENL----GLPLPTGFTVERH 386 D Y T L +Y+Q ++M AV P G V N G + G+ VER Sbjct: 130 DYYHWTQKLFLFLYDQGLAYMADM----AVNYCPELGTVLSNEEVENGFSIEGGYPVERK 185 Query: 387 AMQXXXXXXXE--------LDVPEWPRHEKELEACW-----GGLIALH 491 ++ LD +WP + K+L+ W G L+ H Sbjct: 186 MLRQWILKITAYADKLLEGLDALDWPENVKQLQKNWIGKSEGALVTFH 233
>MASZ_BRUSU (Q8FZ50) Malate synthase G (EC 2.3.3.9)| Length = 728 Score = 29.3 bits (64), Expect = 10.0 Identities = 13/26 (50%), Positives = 16/26 (61%) Frame = +3 Query: 456 LEACWGGLIALHPYVPERRHMEHREG 533 ++A + LIALH P RHM REG Sbjct: 369 MDAAFTSLIALHDIGPNGRHMNSREG 394
>MASZ_BRUME (Q8YIR3) Malate synthase G (EC 2.3.3.9)| Length = 728 Score = 29.3 bits (64), Expect = 10.0 Identities = 13/26 (50%), Positives = 16/26 (61%) Frame = +3 Query: 456 LEACWGGLIALHPYVPERRHMEHREG 533 ++A + LIALH P RHM REG Sbjct: 369 MDAAFTSLIALHDIGPNGRHMNSREG 394
>ZFNL2_ARATH (Q9SQU4) Zinc finger CCCH type domain-containing protein ZFN-like 2| Length = 437 Score = 29.3 bits (64), Expect = 10.0 Identities = 21/64 (32%), Positives = 31/64 (48%) Frame = +3 Query: 204 DEGQ*DTYVRTHNLMSCIYNQSCSWMQRSHPVRAVLPLPSKGVVRENLGLPLPTGFTVER 383 D+ + ++RT + C + SC + HPV AV P G+V ++GLPL G Sbjct: 284 DQPECQYFMRTGD---CKFGSSCRY---HHPVDAVPP--KTGIVLSSIGLPLRPGVAQCT 335 Query: 384 HAMQ 395 H Q Sbjct: 336 HFAQ 339 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 89,594,877 Number of Sequences: 219361 Number of extensions: 1902157 Number of successful extensions: 4582 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 4410 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4580 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5767334219 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)