ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags35n24
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1COI1_ARATH (O04197) Coronatine-insensitive protein 1 (F-box/LRR-... 125 1e-28
2TIR1_ARATH (Q570C0) TRANSPORT INHIBITOR RESPONSE 1 protein (F-bo... 52 2e-06
3FBXL7_HUMAN (Q9UJT9) F-box/LRR-repeat protein 7 (F-box and leuci... 32 1.5
4FXL17_HUMAN (Q9UF56) F-box/LRR-repeat protein 17 (F-box and leuc... 32 2.0
5SULF1_DROME (Q9VEX0) Extracellular sulfatase SULF-1 homolog prec... 31 2.6
6ASP_ANCCA (Q16937) Ancylostoma secreted protein precursor 31 3.4
7PLXB2_HUMAN (O15031) Plexin-B2 precursor (MM1) 30 4.5
8MYB1_NEUCR (O13493) Myb-like DNA binding protein myb-1 30 4.5
9SYL_CHLPN (Q9Z930) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine-... 30 5.8
10MASZ_BRUSU (Q8FZ50) Malate synthase G (EC 2.3.3.9) 29 10.0
11MASZ_BRUME (Q8YIR3) Malate synthase G (EC 2.3.3.9) 29 10.0
12ZFNL2_ARATH (Q9SQU4) Zinc finger CCCH type domain-containing pro... 29 10.0

>COI1_ARATH (O04197) Coronatine-insensitive protein 1 (F-box/LRR-repeat protein|
           2) (AtFBL2) (COI-1) (AtCOI1)
          Length = 592

 Score =  125 bits (313), Expect = 1e-28
 Identities = 63/121 (52%), Positives = 79/121 (65%), Gaps = 7/121 (5%)
 Frame = -1

Query: 623 SDQGLIRFAIGCTNLRKLELRSCCFSEQALSLAVLHMPSLRYIWVQGYKASPAGLELLLM 444
           SD+GL+ F+ GC NL+KLE+R CCFSE+A++ AV  +PSLRY+WVQGY+AS  G +L+ M
Sbjct: 476 SDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQM 535

Query: 443 ARPFWNIEFTPP-------SPGGLHRMTLDREPCGERQAQVLAYYSLAGQRQDCPDWVTP 285
           ARP+WNIE  P          G +  M        E  A +LAYYSLAGQR DCP  V  
Sbjct: 536 ARPYWNIELIPSRRVPEVNQQGEIREM--------EHPAHILAYYSLAGQRTDCPTTVRV 587

Query: 284 L 282
           L
Sbjct: 588 L 588



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>TIR1_ARATH (Q570C0) TRANSPORT INHIBITOR RESPONSE 1 protein (F-box/LRR-repeat|
           protein 1)
          Length = 594

 Score = 51.6 bits (122), Expect = 2e-06
 Identities = 34/111 (30%), Positives = 50/111 (45%)
 Frame = -1

Query: 623 SDQGLIRFAIGCTNLRKLELRSCCFSEQALSLAVLHMPSLRYIWVQGYKASPAGLELLLM 444
           SD G+     GC +LRKLE+R C F ++AL      + ++R +W+     S    +LL  
Sbjct: 469 SDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQ 528

Query: 443 ARPFWNIEFTPPSPGGLHRMTLDREPCGERQAQVLAYYSLAGQRQDCPDWV 291
             P  N+E          R   D  P      +V  Y ++AG R D P +V
Sbjct: 529 KMPKLNVEVID------ERGAPDSRPESCPVERVFIYRTVAGPRFDMPGFV 573



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>FBXL7_HUMAN (Q9UJT9) F-box/LRR-repeat protein 7 (F-box and leucine-rich repeat|
           protein 7) (F-box protein FBL6/FBL7)
          Length = 491

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
 Frame = -1

Query: 623 SDQGLIRFAIGCTNLRKLELRSC-CFSEQALSLAVLHMPSLRYIWVQGYKASPAGLELLL 447
           SD GL   A+ C NL++L L+SC   + Q L +   +   L+ + VQ  + S   L  + 
Sbjct: 416 SDTGLECLALNCFNLKRLSLKSCESITGQGLQIVAANCFDLQTLNVQDCEVSVEALRFVK 475

Query: 446 MARPFWNIEFTPPS 405
                  IE T P+
Sbjct: 476 RHCKRCVIEHTNPA 489



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>FXL17_HUMAN (Q9UF56) F-box/LRR-repeat protein 17 (F-box and leucine-rich repeat|
           protein 17) (F-box only protein 13) (Fragment)
          Length = 370

 Score = 31.6 bits (70), Expect = 2.0
 Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
 Frame = -1

Query: 623 SDQGLIRFAIGCTNLRKLELR-SCCFSEQALSLAVLHMPSLRYIWVQGYKASPAGL 459
           SD+G+I  A GC  L+++ ++ +   ++Q++     H P L+Y+   G   +  G+
Sbjct: 147 SDEGMIVIAKGCLKLQRIYMQENKLVTDQSVKAFAEHCPELQYVGFMGCSVTSKGV 202



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>SULF1_DROME (Q9VEX0) Extracellular sulfatase SULF-1 homolog precursor (EC|
           3.1.6.-) (DmSulf-1)
          Length = 1114

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = +1

Query: 325 RE*YARTWACLSPQGSRSSVMRCRPPGLGGVNSMFQNGLAMRRSSR 462
           R+ Y R  AC +P G   + +R    GL  VN    NG   RR+ R
Sbjct: 598 RKQYQRNCACFTPDGVVYTKIRAPSAGLHRVNKRTHNGPGRRRNKR 643



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>ASP_ANCCA (Q16937) Ancylostoma secreted protein precursor|
          Length = 424

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 16/57 (28%), Positives = 25/57 (43%)
 Frame = +1

Query: 286 GVTQSGQSCLCPARE*YARTWACLSPQGSRSSVMRCRPPGLGGVNSMFQNGLAMRRS 456
           GV  S    L PA+  Y  +W C   Q  + ++  C P    G+  + QN ++   S
Sbjct: 54  GVEDSNSGKLNPAKNMYKLSWDCAMEQQLQDAIQSC-PSAFAGIQGVAQNVMSWSSS 109



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>PLXB2_HUMAN (O15031) Plexin-B2 precursor (MM1)|
          Length = 1838

 Score = 30.4 bits (67), Expect = 4.5
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +3

Query: 246 MSCIYNQ-SCSWMQRSHPVRAVLPLPSKGVVRENL 347
           +SC+ N+ +C W  R H  R   P P  G+VR ++
Sbjct: 628 ISCVSNRWTCQWDLRYHECREASPNPEDGIVRAHM 662



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>MYB1_NEUCR (O13493) Myb-like DNA binding protein myb-1|
          Length = 324

 Score = 30.4 bits (67), Expect = 4.5
 Identities = 23/72 (31%), Positives = 30/72 (41%), Gaps = 4/72 (5%)
 Frame = -3

Query: 594 RMHQPAEA*ASELLLQRASSFPRG---APYAVAQ-VHMGARL*GLPSRPRAPSHGEAILE 427
           R   P    AS++L       PR     P    Q ++ G+R      RP +PS     L 
Sbjct: 115 RQSAPRRVSASDVLRSSPGQLPRAHMQRPIRYPQDIYTGSR------RPSSPSSFNDSLH 168

Query: 426 HRVHASEPWRPA 391
           HRVH S  W P+
Sbjct: 169 HRVHESIEWFPS 180



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>SYL_CHLPN (Q9Z930) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)|
           (LeuRS)
          Length = 820

 Score = 30.0 bits (66), Expect = 5.8
 Identities = 28/108 (25%), Positives = 41/108 (37%), Gaps = 17/108 (15%)
 Frame = +3

Query: 219 DTYVRTHNLMSCIYNQSCSWMQRSHPVRAVLPLPSKGVVRENL----GLPLPTGFTVERH 386
           D Y  T  L   +Y+Q  ++M       AV   P  G V  N     G  +  G+ VER 
Sbjct: 130 DYYHWTQKLFLFLYDQGLAYMADM----AVNYCPELGTVLSNEEVENGFSIEGGYPVERK 185

Query: 387 AMQXXXXXXXE--------LDVPEWPRHEKELEACW-----GGLIALH 491
            ++                LD  +WP + K+L+  W     G L+  H
Sbjct: 186 MLRQWILKITAYADKLLEGLDALDWPENVKQLQKNWIGKSEGALVTFH 233



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>MASZ_BRUSU (Q8FZ50) Malate synthase G (EC 2.3.3.9)|
          Length = 728

 Score = 29.3 bits (64), Expect = 10.0
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +3

Query: 456 LEACWGGLIALHPYVPERRHMEHREG 533
           ++A +  LIALH   P  RHM  REG
Sbjct: 369 MDAAFTSLIALHDIGPNGRHMNSREG 394



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>MASZ_BRUME (Q8YIR3) Malate synthase G (EC 2.3.3.9)|
          Length = 728

 Score = 29.3 bits (64), Expect = 10.0
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +3

Query: 456 LEACWGGLIALHPYVPERRHMEHREG 533
           ++A +  LIALH   P  RHM  REG
Sbjct: 369 MDAAFTSLIALHDIGPNGRHMNSREG 394



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>ZFNL2_ARATH (Q9SQU4) Zinc finger CCCH type domain-containing protein ZFN-like 2|
          Length = 437

 Score = 29.3 bits (64), Expect = 10.0
 Identities = 21/64 (32%), Positives = 31/64 (48%)
 Frame = +3

Query: 204 DEGQ*DTYVRTHNLMSCIYNQSCSWMQRSHPVRAVLPLPSKGVVRENLGLPLPTGFTVER 383
           D+ +   ++RT +   C +  SC +    HPV AV P    G+V  ++GLPL  G     
Sbjct: 284 DQPECQYFMRTGD---CKFGSSCRY---HHPVDAVPP--KTGIVLSSIGLPLRPGVAQCT 335

Query: 384 HAMQ 395
           H  Q
Sbjct: 336 HFAQ 339


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,594,877
Number of Sequences: 219361
Number of extensions: 1902157
Number of successful extensions: 4582
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4580
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5767334219
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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