| Clone Name | rbags35n24 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_190647.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1893 Score = 145 bits (73), Expect = 2e-31 Identities = 187/225 (83%) Strand = Plus / Minus Query: 401 cagggctcggaggcgtgaactcgatgttccagaatggcctcgccatgagaaggagctcga 460 ||||||||||||| || ||||||||||||||||| ||||| |||||||| ||||| || | Sbjct: 1762 cagggctcggaggtgtaaactcgatgttccagaaaggcctggccatgagcaggaggtcaa 1703 Query: 461 ggcctgctggggaggccttatagccttgcacccatatgtacctgagcgacggcatatgga 520 |||||| | | || || | || ||||||||||||||||| || || || ||||| || | Sbjct: 1702 ggcctgtttgagatgctctgtatccttgcacccatatgtatctcagggagggcatctgca 1643 Query: 521 gcaccgcgagggaaagagcttgctcgctgaagcagcagctccgaagctcaagcttccgca 580 | || |||||||| | |||| ||||||||||||||||||| | | ||||||||| | | Sbjct: 1642 gtacagcgagggacaaagctcgctcgctgaagcagcagcttctcaattcaagcttctgaa 1583 Query: 581 ggttggtgcatccgattgcgaagcggatcaatccctggtcagatt 625 |||||||||| || | |||||| ||||||||||| |||||||||| Sbjct: 1582 ggttggtgcagcccactgcgaaacggatcaatccatggtcagatt 1538 Score = 42.1 bits (21), Expect = 2.2 Identities = 45/53 (84%) Strand = Plus / Minus Query: 319 ccagcaagggagtagtacgcgagaacctgggcttgcctctccccacagggttc 371 ||||||||||| ||||| || |||||||| || || || ||| |||||||||| Sbjct: 1844 ccagcaagggaatagtaggcaagaacctgagcatggctatccacacagggttc 1792
>gb|AY168645.1| Oryza sativa (japonica cultivar-group) COI1 mRNA, complete cds Length = 2088 Score = 145 bits (73), Expect = 2e-31 Identities = 187/225 (83%) Strand = Plus / Minus Query: 401 cagggctcggaggcgtgaactcgatgttccagaatggcctcgccatgagaaggagctcga 460 ||||||||||||| || ||||||||||||||||| ||||| |||||||| ||||| || | Sbjct: 1722 cagggctcggaggtgtaaactcgatgttccagaaaggcctggccatgagcaggaggtcaa 1663 Query: 461 ggcctgctggggaggccttatagccttgcacccatatgtacctgagcgacggcatatgga 520 |||||| | | || || | || ||||||||||||||||| || || || ||||| || | Sbjct: 1662 ggcctgtttgagatgctctgtatccttgcacccatatgtatctcagggagggcatctgca 1603 Query: 521 gcaccgcgagggaaagagcttgctcgctgaagcagcagctccgaagctcaagcttccgca 580 | || |||||||| | |||| ||||||||||||||||||| | | ||||||||| | | Sbjct: 1602 gtacagcgagggacaaagctcgctcgctgaagcagcagcttctcaattcaagcttctgaa 1543 Query: 581 ggttggtgcatccgattgcgaagcggatcaatccctggtcagatt 625 |||||||||| || | |||||| ||||||||||| |||||||||| Sbjct: 1542 ggttggtgcagcccactgcgaaacggatcaatccatggtcagatt 1498 Score = 42.1 bits (21), Expect = 2.2 Identities = 45/53 (84%) Strand = Plus / Minus Query: 319 ccagcaagggagtagtacgcgagaacctgggcttgcctctccccacagggttc 371 ||||||||||| ||||| || |||||||| || || || ||| |||||||||| Sbjct: 1804 ccagcaagggaatagtaggcaagaacctgagcatggctatccacacagggttc 1752
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 145 bits (73), Expect = 2e-31 Identities = 187/225 (83%) Strand = Plus / Minus Query: 401 cagggctcggaggcgtgaactcgatgttccagaatggcctcgccatgagaaggagctcga 460 ||||||||||||| || ||||||||||||||||| ||||| |||||||| ||||| || | Sbjct: 36743759 cagggctcggaggtgtaaactcgatgttccagaaaggcctggccatgagcaggaggtcaa 36743700 Query: 461 ggcctgctggggaggccttatagccttgcacccatatgtacctgagcgacggcatatgga 520 |||||| | | || || | || ||||||||||||||||| || || || ||||| || | Sbjct: 36743699 ggcctgtttgagatgctctgtatccttgcacccatatgtatctcagggagggcatctgca 36743640 Query: 521 gcaccgcgagggaaagagcttgctcgctgaagcagcagctccgaagctcaagcttccgca 580 | || |||||||| | |||| ||||||||||||||||||| | | ||||||||| | | Sbjct: 36743639 gtacagcgagggacaaagctcgctcgctgaagcagcagcttctcaattcaagcttctgaa 36743580 Query: 581 ggttggtgcatccgattgcgaagcggatcaatccctggtcagatt 625 |||||||||| || | |||||| ||||||||||| |||||||||| Sbjct: 36743579 ggttggtgcagcccactgcgaaacggatcaatccatggtcagatt 36743535 Score = 42.1 bits (21), Expect = 2.2 Identities = 45/53 (84%) Strand = Plus / Minus Query: 319 ccagcaagggagtagtacgcgagaacctgggcttgcctctccccacagggttc 371 ||||||||||| ||||| || |||||||| || || || ||| |||||||||| Sbjct: 36743841 ccagcaagggaatagtaggcaagaacctgagcatggctatccacacagggttc 36743789 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 135 ataaaagcagctagctaatg 154 |||||||||||||||||||| Sbjct: 2090782 ataaaagcagctagctaatg 2090763
>gb|DQ028826.1| Oryza sativa (japonica cultivar-group) coronatine-insensitive 1 mRNA, complete cds Length = 1893 Score = 145 bits (73), Expect = 2e-31 Identities = 187/225 (83%) Strand = Plus / Minus Query: 401 cagggctcggaggcgtgaactcgatgttccagaatggcctcgccatgagaaggagctcga 460 ||||||||||||| || ||||||||||||||||| ||||| |||||||| ||||| || | Sbjct: 1762 cagggctcggaggtgtaaactcgatgttccagaaaggcctggccatgagcaggaggtcaa 1703 Query: 461 ggcctgctggggaggccttatagccttgcacccatatgtacctgagcgacggcatatgga 520 |||||| | | || || | || ||||||||||||||||| || || || ||||| || | Sbjct: 1702 ggcctgtttgagatgctctgtatccttgcacccatatgtatctcagggagggcatctgca 1643 Query: 521 gcaccgcgagggaaagagcttgctcgctgaagcagcagctccgaagctcaagcttccgca 580 | || |||||||| | |||| ||||||||||||||||||| | | ||||||||| | | Sbjct: 1642 gtacagcgagggacaaagctcgctcgctgaagcagcagcttctcaattcaagcttctgaa 1583 Query: 581 ggttggtgcatccgattgcgaagcggatcaatccctggtcagatt 625 |||||||||| || | |||||| ||||||||||| |||||||||| Sbjct: 1582 ggttggtgcagcccactgcgaaacggatcaatccatggtcagatt 1538 Score = 42.1 bits (21), Expect = 2.2 Identities = 45/53 (84%) Strand = Plus / Minus Query: 319 ccagcaagggagtagtacgcgagaacctgggcttgcctctccccacagggttc 371 ||||||||||| ||||| || |||||||| || || || ||| |||||||||| Sbjct: 1844 ccagcaagggaatagtaggcaagaacctgagcatggctatccacacagggttc 1792
>dbj|AP003279.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0529E05 Length = 134982 Score = 145 bits (73), Expect = 2e-31 Identities = 187/225 (83%) Strand = Plus / Minus Query: 401 cagggctcggaggcgtgaactcgatgttccagaatggcctcgccatgagaaggagctcga 460 ||||||||||||| || ||||||||||||||||| ||||| |||||||| ||||| || | Sbjct: 70074 cagggctcggaggtgtaaactcgatgttccagaaaggcctggccatgagcaggaggtcaa 70015 Query: 461 ggcctgctggggaggccttatagccttgcacccatatgtacctgagcgacggcatatgga 520 |||||| | | || || | || ||||||||||||||||| || || || ||||| || | Sbjct: 70014 ggcctgtttgagatgctctgtatccttgcacccatatgtatctcagggagggcatctgca 69955 Query: 521 gcaccgcgagggaaagagcttgctcgctgaagcagcagctccgaagctcaagcttccgca 580 | || |||||||| | |||| ||||||||||||||||||| | | ||||||||| | | Sbjct: 69954 gtacagcgagggacaaagctcgctcgctgaagcagcagcttctcaattcaagcttctgaa 69895 Query: 581 ggttggtgcatccgattgcgaagcggatcaatccctggtcagatt 625 |||||||||| || | |||||| ||||||||||| |||||||||| Sbjct: 69894 ggttggtgcagcccactgcgaaacggatcaatccatggtcagatt 69850 Score = 42.1 bits (21), Expect = 2.2 Identities = 45/53 (84%) Strand = Plus / Minus Query: 319 ccagcaagggagtagtacgcgagaacctgggcttgcctctccccacagggttc 371 ||||||||||| ||||| || |||||||| || || || ||| |||||||||| Sbjct: 70156 ccagcaagggaatagtaggcaagaacctgagcatggctatccacacagggttc 70104
>dbj|AK121543.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033032A10, full insert sequence Length = 2163 Score = 145 bits (73), Expect = 2e-31 Identities = 187/225 (83%) Strand = Plus / Minus Query: 401 cagggctcggaggcgtgaactcgatgttccagaatggcctcgccatgagaaggagctcga 460 ||||||||||||| || ||||||||||||||||| ||||| |||||||| ||||| || | Sbjct: 1738 cagggctcggaggtgtaaactcgatgttccagaaaggcctggccatgagcaggaggtcaa 1679 Query: 461 ggcctgctggggaggccttatagccttgcacccatatgtacctgagcgacggcatatgga 520 |||||| | | || || | || ||||||||||||||||| || || || ||||| || | Sbjct: 1678 ggcctgtttgagatgctctgtatccttgcacccatatgtatctcagggagggcatctgca 1619 Query: 521 gcaccgcgagggaaagagcttgctcgctgaagcagcagctccgaagctcaagcttccgca 580 | || |||||||| | |||| ||||||||||||||||||| | | ||||||||| | | Sbjct: 1618 gtacagcgagggacaaagctcgctcgctgaagcagcagcttctcaattcaagcttctgaa 1559 Query: 581 ggttggtgcatccgattgcgaagcggatcaatccctggtcagatt 625 |||||||||| || | |||||| ||||||||||| |||||||||| Sbjct: 1558 ggttggtgcagcccactgcgaaacggatcaatccatggtcagatt 1514
>gb|AY109565.1| Zea mays CL896_1 mRNA sequence Length = 2190 Score = 109 bits (55), Expect = 1e-20 Identities = 118/139 (84%) Strand = Plus / Minus Query: 487 tgcacccatatgtacctgagcgacggcatatggagcaccgcgagggaaagagcttgctcg 546 ||||||||||||||||| ||||| ||||| |||||||| || | | |||||| ||||| Sbjct: 1743 tgcacccatatgtacctcagcgagggcatctggagcacggccactgccagagctcgctcg 1684 Query: 547 ctgaagcagcagctccgaagctcaagcttccgcaggttggtgcatccgattgcgaagcgg 606 ||||||||||||| || ||||| ||||||||||||||||||||||| |||| || || Sbjct: 1683 ctgaagcagcagcccctcagctcgagcttccgcaggttggtgcatcccgttgcaaactgg 1624 Query: 607 atcaatccctggtcagatt 625 |||||||| | |||||||| Sbjct: 1623 atcaatccgttgtcagatt 1605 Score = 46.1 bits (23), Expect = 0.14 Identities = 44/51 (86%) Strand = Plus / Minus Query: 300 agggcagtcctgcctctgcccagcaagggagtagtacgcgagaacctgggc 350 |||||||||| ||||| |||||||||||||| ||||| || |||||||| Sbjct: 1930 agggcagtccggcctccttccagcaagggagtaatacgcaaggacctgggc 1880
>gb|BT019152.1| Zea mays clone Contig815.F mRNA sequence Length = 1411 Score = 75.8 bits (38), Expect = 2e-10 Identities = 155/194 (79%) Strand = Plus / Minus Query: 417 gaactcgatgttccagaatggcctcgccatgagaaggagctcgaggcctgctggggaggc 476 |||||||||||||||| | ||||| |||||||| | ||| || |||| | | ||||| Sbjct: 941 gaactcgatgttccagtacggcctggccatgagcatgaggtcccggcccgtctgagaggc 882 Query: 477 cttatagccttgcacccatatgtacctgagcgacggcatatggagcaccgcgagggaaag 536 | | || || |||||||||| |||||| ||||| ||||| |||||||| || | | || Sbjct: 881 cctgtacccctgcacccatacgtacctcagcgagggcatctggagcacggccaccgccag 822 Query: 537 agcttgctcgctgaagcagcagctccgaagctcaagcttccgcaggttggtgcatccgat 596 || |||||||||||||||||| || ||||| |||||||||||||||| ||| || || Sbjct: 821 ggcccgctcgctgaagcagcagcccctcagctccagcttccgcaggttggcgcaccccat 762 Query: 597 tgcgaagcggatca 610 ||||| ||||||| Sbjct: 761 cgcgaaccggatca 748 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 319 ccagcaagggagtagtacgcgagaacctg 347 ||||| ||||| ||||||||||||||||| Sbjct: 1039 ccagcgagggaatagtacgcgagaacctg 1011
>gb|AY111944.1| Zea mays CL896_2 mRNA sequence Length = 579 Score = 75.8 bits (38), Expect = 2e-10 Identities = 155/194 (79%) Strand = Plus / Minus Query: 417 gaactcgatgttccagaatggcctcgccatgagaaggagctcgaggcctgctggggaggc 476 |||||||||||||||| | ||||| |||||||| | ||| || |||| | | ||||| Sbjct: 210 gaactcgatgttccagtacggcctggccatgagcatgaggtcccggcccgtctgagaggc 151 Query: 477 cttatagccttgcacccatatgtacctgagcgacggcatatggagcaccgcgagggaaag 536 | | || || |||||||||| |||||| ||||| ||||| |||||||| || | | || Sbjct: 150 cctgtacccctgcacccatacgtacctcagcgagggcatctggagcacggccaccgccag 91 Query: 537 agcttgctcgctgaagcagcagctccgaagctcaagcttccgcaggttggtgcatccgat 596 || |||||||||||||||||| || ||||| |||||||||||||||| ||| || || Sbjct: 90 ggcccgctcgctgaagcagcagcccctcagctccagcttccgcaggttggcgcaccccat 31 Query: 597 tgcgaagcggatca 610 ||||| ||||||| Sbjct: 30 cgcgaaccggatca 17 Score = 48.1 bits (24), Expect = 0.035 Identities = 30/32 (93%) Strand = Plus / Minus Query: 58 tagtacaagcgacaacggcaacttattgcact 89 |||||||||| ||||| ||||||||||||||| Sbjct: 508 tagtacaagcaacaaccgcaacttattgcact 477 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 319 ccagcaagggagtagtacgcgagaacctg 347 ||||| ||||| ||||||||||||||||| Sbjct: 308 ccagcgagggaatagtacgcgagaacctg 280
>gb|AY109490.1| Zea mays CL920_1 mRNA sequence Length = 2298 Score = 60.0 bits (30), Expect = 9e-06 Identities = 162/206 (78%) Strand = Plus / Minus Query: 409 ggaggcgtgaactcgatgttccagaatggcctcgccatgagaaggagctcgaggcctgct 468 ||||| || ||||| ||||||||||| ||||| |||||||| | ||| || |||| | | Sbjct: 1865 ggaggtgtaaactctatgttccagaagggccttgccatgagcatgaggtctcggccggtt 1806 Query: 469 ggggaggccttatagccttgcacccatatgtacctgagcgacggcatatggagcaccgcg 528 | || || || ||||| || ||||||| |||||| || || |||||||| || | || Sbjct: 1805 tgagacgctttgtagccctgaacccatacgtacctcagggaaggcatatgtagtattgca 1746 Query: 529 agggaaagagcttgctcgctgaagcagcagctccgaagctcaagcttccgcaggttggtg 588 |||| || ||| |||||||||||||||| |||| || |||||||| |||||||| | Sbjct: 1745 agggccagtgctcgctcgctgaagcagcaactcctgagttcaagctttcgcaggtttacg 1686 Query: 589 catccgattgcgaagcggatcaatcc 614 || || | |||||||| ||||||||| Sbjct: 1685 caacccaatgcgaagctgatcaatcc 1660
>gb|AC130602.5| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1122D01, complete sequence Length = 126532 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Minus Query: 537 agcttgctcgctgaagcagcagctccgaagctcaagcttccgcaggtt 584 ||||||||| |||||||| || |||| |||||||||||||||||||| Sbjct: 37225 agcttgctcactgaagcaacaactccttagctcaagcttccgcaggtt 37178 Score = 42.1 bits (21), Expect = 2.2 Identities = 36/41 (87%) Strand = Plus / Minus Query: 409 ggaggcgtgaactcgatgttccagaatggcctcgccatgag 449 ||||| || ||||| ||||||||||| ||||| |||||||| Sbjct: 37353 ggaggtgtaaactctatgttccagaagggcctggccatgag 37313
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Minus Query: 537 agcttgctcgctgaagcagcagctccgaagctcaagcttccgcaggtt 584 ||||||||| |||||||| || |||| |||||||||||||||||||| Sbjct: 21918011 agcttgctcactgaagcaacaactccttagctcaagcttccgcaggtt 21917964 Score = 42.1 bits (21), Expect = 2.2 Identities = 36/41 (87%) Strand = Plus / Minus Query: 409 ggaggcgtgaactcgatgttccagaatggcctcgccatgag 449 ||||| || ||||| ||||||||||| ||||| |||||||| Sbjct: 21918139 ggaggtgtaaactctatgttccagaagggcctggccatgag 21918099
>dbj|AK101514.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033046F05, full insert sequence Length = 2305 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Minus Query: 537 agcttgctcgctgaagcagcagctccgaagctcaagcttccgcaggtt 584 ||||||||| |||||||| || |||| |||||||||||||||||||| Sbjct: 1741 agcttgctcactgaagcaacaactccttagctcaagcttccgcaggtt 1694
>gb|AC161171.5| Mus musculus chromosome 3, clone RP24-326F21, complete sequence Length = 153637 Score = 44.1 bits (22), Expect = 0.55 Identities = 25/26 (96%) Strand = Plus / Minus Query: 220 atacgtacgtacgtacacacaacttg 245 ||||||||||||||||| |||||||| Sbjct: 43407 atacgtacgtacgtacatacaacttg 43382
>gb|L06434.2|RATNEUROTR Rattus norvegicus NTT4 (Ntt4) mRNA, complete cds Length = 6411 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 220 atacgtacgtacgtacacaca 240 ||||||||||||||||||||| Sbjct: 4153 atacgtacgtacgtacacaca 4173
>gb|AC182436.1| Mus musculus chromosome 5, clone wi1-1982K15, complete sequence Length = 43869 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 220 atacgtacgtacgtacacaca 240 ||||||||||||||||||||| Sbjct: 17154 atacgtacgtacgtacacaca 17134
>ref|NM_001033079.1| Rattus norvegicus solute carrier family 6 (neurotransmitter transporter), member 17 (Slc6a17), mRNA Length = 6411 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 220 atacgtacgtacgtacacaca 240 ||||||||||||||||||||| Sbjct: 4153 atacgtacgtacgtacacaca 4173
>emb|AL158175.7| Human DNA sequence from clone RP11-359G22 on chromosome 20 Contains the KRT18P3 gene for keratin 18 pseudogene 3 and a novel gene, complete sequence Length = 86025 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 5 taaaggaaaagcacagagcaa 25 ||||||||||||||||||||| Sbjct: 76027 taaaggaaaagcacagagcaa 76007
>dbj|AK080705.1| Mus musculus adult retina cDNA, RIKEN full-length enriched library, clone:A930006A15 product:weakly similar to GLUTAMIC-ACID RICH PROTEIN [Rattus norvegicus], full insert sequence Length = 2564 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 220 atacgtacgtacgtacacaca 240 ||||||||||||||||||||| Sbjct: 1532 atacgtacgtacgtacacaca 1512
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 222 acgtacgtacgtacacacaac 242 ||||||||||||||||||||| Sbjct: 3527471 acgtacgtacgtacacacaac 3527451
>emb|AL954242.1|PTB109N16 Pan troglodytes chromosome 22 BAC PTB-109N16, complete sequence Length = 190477 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 348 ggcttgcctctccccacaggg 368 ||||||||||||||||||||| Sbjct: 85416 ggcttgcctctccccacaggg 85396
>gb|AC104742.9| Mus musculus chromosome 5, clone RP24-334A12, complete sequence Length = 117378 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 220 atacgtacgtacgtacacaca 240 ||||||||||||||||||||| Sbjct: 32789 atacgtacgtacgtacacaca 32809
>dbj|AP001752.1| Homo sapiens genomic DNA, chromosome 21q, section 96/105 Length = 340000 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 348 ggcttgcctctccccacaggg 368 ||||||||||||||||||||| Sbjct: 117351 ggcttgcctctccccacaggg 117331
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 222 acgtacgtacgtacacacaac 242 ||||||||||||||||||||| Sbjct: 3527416 acgtacgtacgtacacacaac 3527396
>emb|AL954825.3|CNS08CD1 Oryza sativa chromosome 12, . BAC OJ2007_H06 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 103647 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 222 acgtacgtacgtacacacaac 242 ||||||||||||||||||||| Sbjct: 42399 acgtacgtacgtacacacaac 42379
>emb|AL713902.2|CNS07YQ2 Oryza sativa chromosome 12, . BAC OJ1494_F10 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 116371 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 222 acgtacgtacgtacacacaac 242 ||||||||||||||||||||| Sbjct: 4445 acgtacgtacgtacacacaac 4465
>gb|AC102518.11| Mus musculus chromosome 8, clone RP24-502J8, complete sequence Length = 199824 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 220 atacgtacgtacgtacacaca 240 ||||||||||||||||||||| Sbjct: 26814 atacgtacgtacgtacacaca 26794
>dbj|AP001052.1| Homo sapiens genomic DNA, chromosome 21, clone:KB22A5, MX1-D21S171 region, complete sequence Length = 145540 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 348 ggcttgcctctccccacaggg 368 ||||||||||||||||||||| Sbjct: 95530 ggcttgcctctccccacaggg 95510
>gb|AC091775.10| Oryza sativa chromosome 3 BAC OSJNBa0004G17 genomic sequence, complete sequence Length = 139074 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 128 agggcatataaaagcagctagcta 151 |||||||||||||| ||||||||| Sbjct: 16409 agggcatataaaagtagctagcta 16386
>gb|AC116505.13| Mus musculus chromosome 5, clone RP24-302O2, complete sequence Length = 178695 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 221 tacgtacgtacgtacacaca 240 |||||||||||||||||||| Sbjct: 134967 tacgtacgtacgtacacaca 134948
>gb|AC163094.5| Mus musculus chromosome 5, clone RP23-123P10, complete sequence Length = 208850 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 251 ctgtatttacaatcaatcat 270 |||||||||||||||||||| Sbjct: 159334 ctgtatttacaatcaatcat 159353
>gb|AC154354.2| Mus musculus BAC clone RP23-203C5 from chromosome 14, complete sequence Length = 238278 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 catataaaagcagctagcta 151 |||||||||||||||||||| Sbjct: 7859 catataaaagcagctagcta 7878
>gb|AC165273.2| Mus musculus BAC clone RP24-267I1 from chromosome 13, complete sequence Length = 190600 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 235 cacacaacttgatgtcctgt 254 |||||||||||||||||||| Sbjct: 71685 cacacaacttgatgtcctgt 71704
>gb|AC113063.8| Mus musculus chromosome 15, clone RP23-261F24, complete sequence Length = 218490 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 221 tacgtacgtacgtacacaca 240 |||||||||||||||||||| Sbjct: 10043 tacgtacgtacgtacacaca 10062
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 128 agggcatataaaagcagctagcta 151 |||||||||||||| ||||||||| Sbjct: 28136696 agggcatataaaagtagctagcta 28136719
>gb|AC122025.3| Mus musculus BAC clone RP24-388G8 from 12, complete sequence Length = 202612 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 221 tacgtacgtacgtacacaca 240 |||||||||||||||||||| Sbjct: 134762 tacgtacgtacgtacacaca 134743
>gb|DQ378878.1| Cyprinus carpio clone LiC-12 microsatellite sequence Length = 310 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 529 agggaaagagcttgctcgct 548 |||||||||||||||||||| Sbjct: 10 agggaaagagcttgctcgct 29
>gb|CP000107.1| Ehrlichia canis str. Jake, complete genome Length = 1315030 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 168 caaattaccatattcagaca 187 |||||||||||||||||||| Sbjct: 523933 caaattaccatattcagaca 523914
>emb|Z85994.1|HS32I10 Human DNA sequence from clone RP1-32I10 on chromosome 22, complete sequence Length = 93312 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 460 aggcctgctggggaggcctt 479 |||||||||||||||||||| Sbjct: 92902 aggcctgctggggaggcctt 92883
>gb|AC114543.10| Mus musculus, clone RP24-107C11, complete sequence Length = 191639 Score = 40.1 bits (20), Expect = 8.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 303 gcagtcctgcctctgcccagcaagggag 330 |||| ||||||||||||||| ||||||| Sbjct: 129394 gcagccctgcctctgcccagtaagggag 129421
>gb|AC023049.14| Homo sapiens 3 BAC RP11-468F18 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 117951 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 90 acacctcagctacagcacta 109 |||||||||||||||||||| Sbjct: 83009 acacctcagctacagcacta 82990
>gb|AC175112.5| Mus musculus chromosome 5, clone wi1-1409A7, complete sequence Length = 38028 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 251 ctgtatttacaatcaatcat 270 |||||||||||||||||||| Sbjct: 37279 ctgtatttacaatcaatcat 37298
>gb|AC154328.2| Mus musculus BAC clone RP23-298N23 from chromosome 13, complete sequence Length = 182025 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 221 tacgtacgtacgtacacaca 240 |||||||||||||||||||| Sbjct: 67425 tacgtacgtacgtacacaca 67406
>gb|AC116801.9| Mus musculus chromosome 8, clone RP24-337F7, complete sequence Length = 168297 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 221 tacgtacgtacgtacacaca 240 |||||||||||||||||||| Sbjct: 61762 tacgtacgtacgtacacaca 61743
>gb|AC158388.2| Mus musculus BAC clone RP24-545I9 from chromosome 14, complete sequence Length = 183148 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 132 catataaaagcagctagcta 151 |||||||||||||||||||| Sbjct: 36526 catataaaagcagctagcta 36507
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 221 tacgtacgtacgtacacaca 240 |||||||||||||||||||| Sbjct: 9990855 tacgtacgtacgtacacaca 9990874
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 128 agggcatataaaagcagctagcta 151 |||||||||||||| ||||||||| Sbjct: 28228020 agggcatataaaagtagctagcta 28228043
>gb|AC156995.6| Mus musculus chromosome 5, clone RP23-77E18, complete sequence Length = 138507 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 251 ctgtatttacaatcaatcat 270 |||||||||||||||||||| Sbjct: 114688 ctgtatttacaatcaatcat 114669
>gb|AC138553.3| Ornithorhynchus anatinus clone OA_Bb-524H4, complete sequence Length = 144677 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 527 cgagggaaagagcttgctcg 546 |||||||||||||||||||| Sbjct: 24857 cgagggaaagagcttgctcg 24876
>dbj|AP002913.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0480E02 Length = 141862 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 135 ataaaagcagctagctaatg 154 |||||||||||||||||||| Sbjct: 11894 ataaaagcagctagctaatg 11875
>dbj|AP006158.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:B1127C04 Length = 121441 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 221 tacgtacgtacgtacacaca 240 |||||||||||||||||||| Sbjct: 30757 tacgtacgtacgtacacaca 30776
>dbj|AP005697.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBb0005C03 Length = 166423 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 221 tacgtacgtacgtacacaca 240 |||||||||||||||||||| Sbjct: 138102 tacgtacgtacgtacacaca 138121
>gb|AC121108.12| Mus musculus chromosome 3, clone RP24-417H10, complete sequence Length = 184753 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 289 gtcacccagtcagggcagtc 308 |||||||||||||||||||| Sbjct: 78671 gtcacccagtcagggcagtc 78690
>gb|AC153866.6| Mus musculus 10 BAC RP23-350O24 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 184984 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 221 tacgtacgtacgtacacaca 240 |||||||||||||||||||| Sbjct: 70385 tacgtacgtacgtacacaca 70366
>emb|AL929003.17| Zebrafish DNA sequence from clone DKEY-235D18 in linkage group 20, complete sequence Length = 175099 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 252 tgtatttacaatcaatcatg 271 |||||||||||||||||||| Sbjct: 132369 tgtatttacaatcaatcatg 132388
>gb|AC118008.14| Mus musculus chromosome 15, clone RP23-435B2, complete sequence Length = 204342 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 221 tacgtacgtacgtacacaca 240 |||||||||||||||||||| Sbjct: 15465 tacgtacgtacgtacacaca 15446
>gb|U19269.1|DMU19269 Drosophila melanogaster Dachshund (dachshund) mRNA, and alternatively spliced Dachshund variants 1,2,3 and 4 mRNA, complete cds Length = 4976 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 220 atacgtacgtacgtacacac 239 |||||||||||||||||||| Sbjct: 91 atacgtacgtacgtacacac 72
>emb|AL627405.17| Mouse DNA sequence from clone RP23-183D11 on chromosome 4, complete sequence Length = 193847 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 221 tacgtacgtacgtacacaca 240 |||||||||||||||||||| Sbjct: 348 tacgtacgtacgtacacaca 329
>emb|AL670227.7| Mouse DNA sequence from clone RP23-317N1 on chromosome 4, complete sequence Length = 219973 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 221 tacgtacgtacgtacacaca 240 |||||||||||||||||||| Sbjct: 218771 tacgtacgtacgtacacaca 218752 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,752,667 Number of Sequences: 3902068 Number of extensions: 4752667 Number of successful extensions: 96521 Number of sequences better than 10.0: 59 Number of HSP's better than 10.0 without gapping: 60 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 96081 Number of HSP's gapped (non-prelim): 427 length of query: 626 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 603 effective length of database: 17,143,297,704 effective search space: 10337408515512 effective search space used: 10337408515512 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)