Clone Information

BLAST Search Result

Clone Name	rbags36c23
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	dbj\|AK104287.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	396	e-107
2	dbj\|AK069502.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	396	e-107
3	dbj\|AK059316.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	396	e-107
4	dbj\|AK104170.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	389	e-105
5	gb\|AY105057.1\| Zea mays PCO108332 mRNA sequence	254	3e-64
6	gb\|BT018742.1\| Zea mays clone EL01N0521E02.d mRNA sequence	230	5e-57
7	dbj\|AP008218.1\| Oryza sativa (japonica cultivar-group) genomic D...	186	6e-44
8	gb\|DP000011.1\| Oryza sativa (japonica cultivar-group) chromosome...	186	6e-44
9	emb\|AL844497.4\|CNS08CAU Oryza sativa chromosome 12, . BAC OSJNBa...	186	6e-44
10	tpg\|BK005598.1\| TPA: TPA_exp: Homo sapiens NSP (NSP) gene, compl...	48	0.038
11	gb\|AC004702.1\|AC004702 Homo sapiens chromosome 17, clone HRPC836...	48	0.038
12	gb\|AC164880.3\| Mus musculus BAC clone RP23-321G17 from chromosom...	44	0.59
13	gb\|AC148972.4\| Mus musculus BAC clone RP24-82J4 from chromosome ...	44	0.59
14	gb\|AC023781.5\| Homo sapiens chromosome 8, clone RP11-149P24, com...	42	2.3
15	emb\|AL953843.6\| Zebrafish DNA sequence from clone DKEY-42P8 in l...	42	2.3
16	emb\|AL807832.6\| Mouse DNA sequence from clone RP23-198D21 on chr...	42	2.3
17	gb\|DQ455589.1\| Phaseolus vulgaris ubiqutin ligase mRNA, partial cds	40	9.2
18	gb\|AC126932.4\| Mus musculus BAC clone RP24-80G20 from chromosome...	40	9.2
19	ref\|XM_948397.1\| Theileria annulata strain Ankara signal recogni...	40	9.2
20	emb\|AL445986.14\| Human DNA sequence from clone RP11-310F24 on ch...	40	9.2
21	ref\|XM_503706.1\| Yarrowia lipolytica CLIB122, YALI0E08822g predi...	40	9.2
22	emb\|CR388044.5\| Zebrafish DNA sequence from clone CH211-174L12 i...	40	9.2
23	emb\|BX530083.11\| Zebrafish DNA sequence from clone DKEY-3L17 in ...	40	9.2
24	emb\|CR354599.10\| Zebrafish DNA sequence from clone CH211-259K16 ...	40	9.2
25	dbj\|AP006716.1\| Staphylococcus haemolyticus JCSC1435 DNA, comple...	40	9.2
26	gb\|AC019064.6\| Homo sapiens BAC clone RP11-153O16 from 2, comple...	40	9.2
27	emb\|BX255962.9\| Zebrafish DNA sequence from clone CH211-269C21 i...	40	9.2
28	emb\|AL929114.8\| Zebrafish DNA sequence from clone CH211-133L11 i...	40	9.2
29	emb\|CR382131.1\| Yarrowia lipolytica chromosome E of strain CLIB ...	40	9.2
30	dbj\|AP004916.1\| Lotus japonicus genomic DNA, chromosome 2, clone...	40	9.2

>dbj|AK104287.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-007-D07, full
           insert sequence
          Length = 1252

 Score =  396 bits (200), Expect = e-107
 Identities = 303/338 (89%)
 Strand = Plus / Minus

                                                                       
Query: 335 gtcgacggagaactgcttcctgataaatctgcaggccgcgacgtcgatcgagtgttgtat 394
           ||||| ||||||||||||||||||||||| |||||||| || ||||||||||| ||||| 
Sbjct: 952 gtcgagggagaactgcttcctgataaatccgcaggccgtgatgtcgatcgagtattgtac 893

                                                                       
Query: 395 gagttgcaatggctgcacttatggccaatcacgtggaagtccacttctgagactttgttg 454
           |||||||| ||||||||||| ||||||||||| |||||||||||||||||||| ||||||
Sbjct: 892 gagttgcagtggctgcacttgtggccaatcacatggaagtccacttctgagaccttgttg 833

                                                                       
Query: 455 cagtcattgcaaagaacccaaaccttgtaacgatatacaggaggcataattgttgcttca 514
           |||||||| || || ||||||||||||||||| || || |||||||| ||||||||||||
Sbjct: 832 cagtcattacagagcacccaaaccttgtaacggtagacgggaggcatgattgttgcttca 773

                                                                       
Query: 515 atctcttgatccaacatgccccagtgaactgtcatatcaagagctgtcttggaacatatt 574
           ||||||||||| ||||   ||||||||  |||||||||||||||||||||||| ||||||
Sbjct: 772 atctcttgatctaacaatgcccagtgatgtgtcatatcaagagctgtcttggagcatatt 713

                                                                       
Query: 575 ggacaagtgtatttattatggtccaccatctcagcgaaacagtccatgtgcatngtgtgt 634
           |||||||||||||| ||||| |||||||||||||  || || ||||||||||| ||||||
Sbjct: 712 ggacaagtgtatttgttatgttccaccatctcagaaaagcattccatgtgcatcgtgtgt 653

                                                 
Query: 635 ccacagttaanaactcttgttccttttaatgaatcaaa 672
           |||||||  | ||||| |||||||||||||||||||||
Sbjct: 652 ccacagtcgagaactcgtgttccttttaatgaatcaaa 615

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>dbj|AK069502.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023020D18, full
           insert sequence
          Length = 1306

 Score =  396 bits (200), Expect = e-107
 Identities = 303/338 (89%)
 Strand = Plus / Minus

                                                                       
Query: 335 gtcgacggagaactgcttcctgataaatctgcaggccgcgacgtcgatcgagtgttgtat 394
           ||||| ||||||||||||||||||||||| |||||||| || ||||||||||| ||||| 
Sbjct: 974 gtcgagggagaactgcttcctgataaatccgcaggccgtgatgtcgatcgagtattgtac 915

                                                                       
Query: 395 gagttgcaatggctgcacttatggccaatcacgtggaagtccacttctgagactttgttg 454
           |||||||| ||||||||||| ||||||||||| |||||||||||||||||||| ||||||
Sbjct: 914 gagttgcagtggctgcacttgtggccaatcacatggaagtccacttctgagaccttgttg 855

                                                                       
Query: 455 cagtcattgcaaagaacccaaaccttgtaacgatatacaggaggcataattgttgcttca 514
           |||||||| || || ||||||||||||||||| || || |||||||| ||||||||||||
Sbjct: 854 cagtcattacagagcacccaaaccttgtaacggtagacgggaggcatgattgttgcttca 795

                                                                       
Query: 515 atctcttgatccaacatgccccagtgaactgtcatatcaagagctgtcttggaacatatt 574
           ||||||||||| ||||   ||||||||  |||||||||||||||||||||||| ||||||
Sbjct: 794 atctcttgatctaacaatgcccagtgatgtgtcatatcaagagctgtcttggagcatatt 735

                                                                       
Query: 575 ggacaagtgtatttattatggtccaccatctcagcgaaacagtccatgtgcatngtgtgt 634
           |||||||||||||| ||||| |||||||||||||  || || ||||||||||| ||||||
Sbjct: 734 ggacaagtgtatttgttatgttccaccatctcagaaaagcattccatgtgcatcgtgtgt 675

                                                 
Query: 635 ccacagttaanaactcttgttccttttaatgaatcaaa 672
           |||||||  | ||||| |||||||||||||||||||||
Sbjct: 674 ccacagtcgagaactcgtgttccttttaatgaatcaaa 637

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>dbj|AK059316.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-025-H03, full
           insert sequence
          Length = 1334

 Score =  396 bits (200), Expect = e-107
 Identities = 303/338 (89%)
 Strand = Plus / Minus

                                                                       
Query: 335 gtcgacggagaactgcttcctgataaatctgcaggccgcgacgtcgatcgagtgttgtat 394
           ||||| ||||||||||||||||||||||| |||||||| || ||||||||||| ||||| 
Sbjct: 952 gtcgagggagaactgcttcctgataaatccgcaggccgtgatgtcgatcgagtattgtac 893

                                                                       
Query: 395 gagttgcaatggctgcacttatggccaatcacgtggaagtccacttctgagactttgttg 454
           |||||||| ||||||||||| ||||||||||| |||||||||||||||||||| ||||||
Sbjct: 892 gagttgcagtggctgcacttgtggccaatcacatggaagtccacttctgagaccttgttg 833

                                                                       
Query: 455 cagtcattgcaaagaacccaaaccttgtaacgatatacaggaggcataattgttgcttca 514
           |||||||| || || ||||||||||||||||| || || |||||||| ||||||||||||
Sbjct: 832 cagtcattacagagcacccaaaccttgtaacggtagacgggaggcatgattgttgcttca 773

                                                                       
Query: 515 atctcttgatccaacatgccccagtgaactgtcatatcaagagctgtcttggaacatatt 574
           ||||||||||| ||||   ||||||||  |||||||||||||||||||||||| ||||||
Sbjct: 772 atctcttgatctaacaatgcccagtgatgtgtcatatcaagagctgtcttggagcatatt 713

                                                                       
Query: 575 ggacaagtgtatttattatggtccaccatctcagcgaaacagtccatgtgcatngtgtgt 634
           |||||||||||||| ||||| |||||||||||||  || || ||||||||||| ||||||
Sbjct: 712 ggacaagtgtatttgttatgttccaccatctcagaaaagcattccatgtgcatcgtgtgt 653

                                                 
Query: 635 ccacagttaanaactcttgttccttttaatgaatcaaa 672
           |||||||  | ||||| |||||||||||||||||||||
Sbjct: 652 ccacagtcgagaactcgtgttccttttaatgaatcaaa 615

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>dbj|AK104170.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-212-F09, full
           insert sequence
          Length = 1203

 Score =  389 bits (196), Expect = e-105
 Identities = 302/338 (89%)
 Strand = Plus / Minus

                                                                       
Query: 335 gtcgacggagaactgcttcctgataaatctgcaggccgcgacgtcgatcgagtgttgtat 394
           ||||| ||||||||||||||||||||||| |||||||| || ||||||||||| ||||| 
Sbjct: 955 gtcgagggagaactgcttcctgataaatccgcaggccgtgatgtcgatcgagtattgtac 896

                                                                       
Query: 395 gagttgcaatggctgcacttatggccaatcacgtggaagtccacttctgagactttgttg 454
           |||||||| ||||||||||| ||||||||||| |||||||||||||||||||| ||||||
Sbjct: 895 gagttgcagtggctgcacttgtggccaatcacatggaagtccacttctgagaccttgttg 836

                                                                       
Query: 455 cagtcattgcaaagaacccaaaccttgtaacgatatacaggaggcataattgttgcttca 514
           |||||||| || || ||||||||||||||||| || || |||||||| ||||||||||||
Sbjct: 835 cagtcattacagagcacccaaaccttgtaacggtagacgggaggcatgattgttgcttca 776

                                                                       
Query: 515 atctcttgatccaacatgccccagtgaactgtcatatcaagagctgtcttggaacatatt 574
           ||||||||||| ||||   ||||||||  |||||||||||||||||||||||| ||||||
Sbjct: 775 atctcttgatctaacaatgcccagtgatgtgtcatatcaagagctgtcttggagcatatt 716

                                                                       
Query: 575 ggacaagtgtatttattatggtccaccatctcagcgaaacagtccatgtgcatngtgtgt 634
           |||||||||||||| ||||| |||||||||||||  |  || ||||||||||| ||||||
Sbjct: 715 ggacaagtgtatttgttatgttccaccatctcagaaaggcattccatgtgcatcgtgtgt 656

                                                 
Query: 635 ccacagttaanaactcttgttccttttaatgaatcaaa 672
           |||||||  | ||||| |||||||||||||||||||||
Sbjct: 655 ccacagtcgagaactcgtgttccttttaatgaatcaaa 618

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>gb|AY105057.1| Zea mays PCO108332 mRNA sequence
          Length = 1335

 Score =  254 bits (128), Expect = 3e-64
 Identities = 276/326 (84%)
 Strand = Plus / Minus

                                                                       
Query: 347 ctgcttcctgataaatctgcaggccgcgacgtcgatcgagtgttgtatgagttgcaatgg 406
           |||||||| |||||||||||||| ||||| || | ||| |||||||| ||  |||| |||
Sbjct: 935 ctgcttccggataaatctgcagggcgcgatgttgttcgggtgttgtacgatctgcagtgg 876

                                                                       
Query: 407 ctgcacttatggccaatcacgtggaagtccacttctgagactttgttgcagtcattgcaa 466
           |||||||| |||||||||||||| |||| ||| |||||||| |||||||| || ||||||
Sbjct: 875 ctgcacttgtggccaatcacgtgaaagttcacctctgagaccttgttgcaatcgttgcaa 816

                                                                       
Query: 467 agaacccaaaccttgtaacgatatacaggaggcataattgttgcttcaatctcttgatcc 526
           || ||||||| |||||| ||||| ||| ||||||| || || ||||| ||||||||||||
Sbjct: 815 agcacccaaatcttgtagcgatacacaagaggcatgatcgtggcttcgatctcttgatcc 756

                                                                       
Query: 527 aacatgccccagtgaactgtcatatcaagagctgtcttggaacatattggacaagtgtat 586
           |||||  |||| |||  ||||| |||||||||||| || || ||||||||||||||||||
Sbjct: 755 aacatttcccaatgatgtgtcaaatcaagagctgttttagagcatattggacaagtgtat 696

                                                                       
Query: 587 ttattatggtccaccatctcagcgaaacagtccatgtgcatngtgtgtccacagttaana 646
           || |||||  ||||||| ||  | |||||   || |||||| |||||||||||||||| |
Sbjct: 695 ttgttatgcgccaccatttcttcaaaacatgtcaagtgcattgtgtgtccacagttaaga 636

                                     
Query: 647 actcttgttccttttaatgaatcaaa 672
           ||||||||||||| |||||| |||||
Sbjct: 635 actcttgttccttgtaatgagtcaaa 610

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>gb|BT018742.1| Zea mays clone EL01N0521E02.d mRNA sequence
          Length = 1221

 Score =  230 bits (116), Expect = 5e-57
 Identities = 273/326 (83%)
 Strand = Plus / Minus

                                                                       
Query: 347 ctgcttcctgataaatctgcaggccgcgacgtcgatcgagtgttgtatgagttgcaatgg 406
           |||||||| ||||||||| | || ||||| || | ||| |||||||| ||  |||| |||
Sbjct: 885 ctgcttccggataaatctacggggcgcgatgttgttcgggtgttgtacgatctgcagtgg 826

                                                                       
Query: 407 ctgcacttatggccaatcacgtggaagtccacttctgagactttgttgcagtcattgcaa 466
           |||||||| |||||||||||||| |||| ||| |||||||| |||||||| || ||||||
Sbjct: 825 ctgcacttgtggccaatcacgtgaaagttcacctctgagaccttgttgcaatcgttgcaa 766

                                                                       
Query: 467 agaacccaaaccttgtaacgatatacaggaggcataattgttgcttcaatctcttgatcc 526
           || ||||||| |||||| ||||| ||| ||||||| || || ||||| ||||||||||||
Sbjct: 765 agcacccaaatcttgtagcgatacacaagaggcatgatcgtggcttcgatctcttgatcc 706

                                                                       
Query: 527 aacatgccccagtgaactgtcatatcaagagctgtcttggaacatattggacaagtgtat 586
           |||||  |||| |||  ||||| |||||||||||| || || ||||||||||||||||||
Sbjct: 705 aacatttcccaatgatgtgtcaaatcaagagctgttttagagcatattggacaagtgtat 646

                                                                       
Query: 587 ttattatggtccaccatctcagcgaaacagtccatgtgcatngtgtgtccacagttaana 646
           || |||||  ||||||| ||  | |||||   || |||||| |||||||||||||| | |
Sbjct: 645 ttgttatgcgccaccatttcttcaaaacatgtcaagtgcattgtgtgtccacagttcaga 586

                                     
Query: 647 actcttgttccttttaatgaatcaaa 672
           ||||||||||||| |||||| |||||
Sbjct: 585 actcttgttccttgtaatgagtcaaa 560

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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score =  186 bits (94), Expect = 6e-44
 Identities = 136/150 (90%)
 Strand = Plus / Minus

                                                                            
Query: 335      gtcgacggagaactgcttcctgataaatctgcaggccgcgacgtcgatcgagtgttgtat 394
                ||||| ||||||||||||||||||||||| |||||||| || ||||||||||| ||||| 
Sbjct: 21493285 gtcgagggagaactgcttcctgataaatccgcaggccgtgatgtcgatcgagtattgtac 21493226

                                                                            
Query: 395      gagttgcaatggctgcacttatggccaatcacgtggaagtccacttctgagactttgttg 454
                |||||||| ||||||||||| ||||||||||| |||||||||||||||||||| ||||||
Sbjct: 21493225 gagttgcagtggctgcacttgtggccaatcacatggaagtccacttctgagaccttgttg 21493166

                                              
Query: 455      cagtcattgcaaagaacccaaaccttgtaa 484
                |||||||| || || |||||||||| ||||
Sbjct: 21493165 cagtcattacagagcacccaaacctagtaa 21493136



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 73/83 (87%)
 Strand = Plus / Minus

                                                                            
Query: 590      ttatggtccaccatctcagcgaaacagtccatgtgcatngtgtgtccacagttaanaact 649
                ||||| |||||||||||||  || || ||||||||||| |||||||||||||  | ||||
Sbjct: 21492349 ttatgttccaccatctcagaaaagcattccatgtgcatcgtgtgtccacagtcgagaact 21492290

                                       
Query: 650      cttgttccttttaatgaatcaaa 672
                | |||||||||||||||||||||
Sbjct: 21492289 cgtgttccttttaatgaatcaaa 21492267



 Score = 83.8 bits (42), Expect = 7e-13
 Identities = 63/70 (90%)
 Strand = Plus / Minus

                                                                            
Query: 517      ctcttgatccaacatgccccagtgaactgtcatatcaagagctgtcttggaacatattgg 576
                ||||||||| ||||   ||||||||  |||||||||||||||||||||||| ||||||||
Sbjct: 21492537 ctcttgatctaacaatgcccagtgatgtgtcatatcaagagctgtcttggagcatattgg 21492478

                          
Query: 577      acaagtgtat 586
                ||||||||||
Sbjct: 21492477 acaagtgtat 21492468



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                           
Query: 476      accttgtaacgatatacaggaggcataattgttgcttcaatct 518
                ||||||||||| || || |||||||| ||||||||||||||||
Sbjct: 21492878 accttgtaacggtagacgggaggcatgattgttgcttcaatct 21492836

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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  186 bits (94), Expect = 6e-44
 Identities = 136/150 (90%)
 Strand = Plus / Minus

                                                                            
Query: 335      gtcgacggagaactgcttcctgataaatctgcaggccgcgacgtcgatcgagtgttgtat 394
                ||||| ||||||||||||||||||||||| |||||||| || ||||||||||| ||||| 
Sbjct: 21421606 gtcgagggagaactgcttcctgataaatccgcaggccgtgatgtcgatcgagtattgtac 21421547

                                                                            
Query: 395      gagttgcaatggctgcacttatggccaatcacgtggaagtccacttctgagactttgttg 454
                |||||||| ||||||||||| ||||||||||| |||||||||||||||||||| ||||||
Sbjct: 21421546 gagttgcagtggctgcacttgtggccaatcacatggaagtccacttctgagaccttgttg 21421487

                                              
Query: 455      cagtcattgcaaagaacccaaaccttgtaa 484
                |||||||| || || |||||||||| ||||
Sbjct: 21421486 cagtcattacagagcacccaaacctagtaa 21421457



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 73/83 (87%)
 Strand = Plus / Minus

                                                                            
Query: 590      ttatggtccaccatctcagcgaaacagtccatgtgcatngtgtgtccacagttaanaact 649
                ||||| |||||||||||||  || || ||||||||||| |||||||||||||  | ||||
Sbjct: 21420670 ttatgttccaccatctcagaaaagcattccatgtgcatcgtgtgtccacagtcgagaact 21420611

                                       
Query: 650      cttgttccttttaatgaatcaaa 672
                | |||||||||||||||||||||
Sbjct: 21420610 cgtgttccttttaatgaatcaaa 21420588



 Score = 83.8 bits (42), Expect = 7e-13
 Identities = 63/70 (90%)
 Strand = Plus / Minus

                                                                            
Query: 517      ctcttgatccaacatgccccagtgaactgtcatatcaagagctgtcttggaacatattgg 576
                ||||||||| ||||   ||||||||  |||||||||||||||||||||||| ||||||||
Sbjct: 21420858 ctcttgatctaacaatgcccagtgatgtgtcatatcaagagctgtcttggagcatattgg 21420799

                          
Query: 577      acaagtgtat 586
                ||||||||||
Sbjct: 21420798 acaagtgtat 21420789



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                           
Query: 476      accttgtaacgatatacaggaggcataattgttgcttcaatct 518
                ||||||||||| || || |||||||| ||||||||||||||||
Sbjct: 21421199 accttgtaacggtagacgggaggcatgattgttgcttcaatct 21421157

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>emb|AL844497.4|CNS08CAU Oryza sativa chromosome 12, . BAC OSJNBa0085B23 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 158019

 Score =  186 bits (94), Expect = 6e-44
 Identities = 136/150 (90%)
 Strand = Plus / Plus

                                                                          
Query: 335    gtcgacggagaactgcttcctgataaatctgcaggccgcgacgtcgatcgagtgttgtat 394
              ||||| ||||||||||||||||||||||| |||||||| || ||||||||||| ||||| 
Sbjct: 152604 gtcgagggagaactgcttcctgataaatccgcaggccgtgatgtcgatcgagtattgtac 152663

                                                                          
Query: 395    gagttgcaatggctgcacttatggccaatcacgtggaagtccacttctgagactttgttg 454
              |||||||| ||||||||||| ||||||||||| |||||||||||||||||||| ||||||
Sbjct: 152664 gagttgcagtggctgcacttgtggccaatcacatggaagtccacttctgagaccttgttg 152723

                                            
Query: 455    cagtcattgcaaagaacccaaaccttgtaa 484
              |||||||| || || |||||||||| ||||
Sbjct: 152724 cagtcattacagagcacccaaacctagtaa 152753



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 73/83 (87%)
 Strand = Plus / Plus

                                                                          
Query: 590    ttatggtccaccatctcagcgaaacagtccatgtgcatngtgtgtccacagttaanaact 649
              ||||| |||||||||||||  || || ||||||||||| |||||||||||||  | ||||
Sbjct: 153540 ttatgttccaccatctcagaaaagcattccatgtgcatcgtgtgtccacagtcgagaact 153599

                                     
Query: 650    cttgttccttttaatgaatcaaa 672
              | |||||||||||||||||||||
Sbjct: 153600 cgtgttccttttaatgaatcaaa 153622



 Score = 83.8 bits (42), Expect = 7e-13
 Identities = 63/70 (90%)
 Strand = Plus / Plus

                                                                          
Query: 517    ctcttgatccaacatgccccagtgaactgtcatatcaagagctgtcttggaacatattgg 576
              ||||||||| ||||   ||||||||  |||||||||||||||||||||||| ||||||||
Sbjct: 153352 ctcttgatctaacaatgcccagtgatgtgtcatatcaagagctgtcttggagcatattgg 153411

                        
Query: 577    acaagtgtat 586
              ||||||||||
Sbjct: 153412 acaagtgtat 153421



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                         
Query: 476    accttgtaacgatatacaggaggcataattgttgcttcaatct 518
              ||||||||||| || || |||||||| ||||||||||||||||
Sbjct: 153011 accttgtaacggtagacgggaggcatgattgttgcttcaatct 153053

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>tpg|BK005598.1| TPA: TPA_exp: Homo sapiens NSP (NSP) gene, complete cds, alternatively
              spliced
          Length = 227735

 Score = 48.1 bits (24), Expect = 0.038
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                      
Query: 312    gtctgtcttaagatgagtctgttg 335
              ||||||||||||||||||||||||
Sbjct: 120205 gtctgtcttaagatgagtctgttg 120228

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>gb|AC004702.1|AC004702 Homo sapiens chromosome 17, clone HRPC836L9, complete sequence
          Length = 120821

 Score = 48.1 bits (24), Expect = 0.038
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 312   gtctgtcttaagatgagtctgttg 335
             ||||||||||||||||||||||||
Sbjct: 83024 gtctgtcttaagatgagtctgttg 83001

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>gb|AC164880.3| Mus musculus BAC clone RP23-321G17 from chromosome 7, complete sequence
          Length = 210387

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 575    ggacaagtgtatttattatggt 596
              ||||||||||||||||||||||
Sbjct: 130034 ggacaagtgtatttattatggt 130013

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>gb|AC148972.4| Mus musculus BAC clone RP24-82J4 from chromosome 7, complete sequence
          Length = 221912

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 575    ggacaagtgtatttattatggt 596
              ||||||||||||||||||||||
Sbjct: 187310 ggacaagtgtatttattatggt 187289

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>gb|AC023781.5| Homo sapiens chromosome 8, clone RP11-149P24, complete sequence
          Length = 147607

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 649   tcttgttccttttaatgaatc 669
             |||||||||||||||||||||
Sbjct: 90317 tcttgttccttttaatgaatc 90297

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>emb|AL953843.6| Zebrafish DNA sequence from clone DKEY-42P8 in linkage group 22,
             complete sequence
          Length = 212575

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 140   ttcaagagatgaattgaatct 160
             |||||||||||||||||||||
Sbjct: 78277 ttcaagagatgaattgaatct 78257

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>emb|AL807832.6| Mouse DNA sequence from clone RP23-198D21 on chromosome 2, complete
              sequence
          Length = 192480

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                               
Query: 443    gagactttgttgcagtcattgcaaagaacccaa 475
              |||| ||||||||||||||| |||||| |||||
Sbjct: 145078 gagaatttgttgcagtcattccaaagatcccaa 145046

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>gb|DQ455589.1| Phaseolus vulgaris ubiqutin ligase mRNA, partial cds
          Length = 467

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 455 cagtcattgcaaagaacccaaacc 478
           |||||||||||||||| |||||||
Sbjct: 386 cagtcattgcaaagaatccaaacc 363

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>gb|AC126932.4| Mus musculus BAC clone RP24-80G20 from chromosome 3, complete sequence
          Length = 214712

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 231   aatgcttcttctatgtgtat 250
             ||||||||||||||||||||
Sbjct: 67919 aatgcttcttctatgtgtat 67900

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>ref|XM_948397.1| Theileria annulata strain Ankara signal recognition particle 68-kDa
           subunit (TA11190) partial mRNA
          Length = 1803

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 182 atggcccagggatggggttgacactact 209
           ||||| ||||| ||||||||||||||||
Sbjct: 750 atggctcagggttggggttgacactact 723

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>emb|AL445986.14| Human DNA sequence from clone RP11-310F24 on chromosome 9 Contains a
             CpG island, complete sequence
          Length = 120873

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 646   aactcttgttccttttaatg 665
             ||||||||||||||||||||
Sbjct: 24656 aactcttgttccttttaatg 24675

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>ref|XM_503706.1| Yarrowia lipolytica CLIB122, YALI0E08822g predicted mRNA
          Length = 1113

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 371 cgcgacgtcgatcgagtgttgtat 394
           ||||||| ||||||||||||||||
Sbjct: 32  cgcgacgacgatcgagtgttgtat 9

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>emb|CR388044.5| Zebrafish DNA sequence from clone CH211-174L12 in linkage group 24,
            complete sequence
          Length = 49249

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 653  gttccttttaatgaatcaaa 672
            ||||||||||||||||||||
Sbjct: 2510 gttccttttaatgaatcaaa 2529

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>emb|BX530083.11| Zebrafish DNA sequence from clone DKEY-3L17 in linkage group 10, complete
              sequence
          Length = 155046

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 85     cctggggaatataatcaagc 104
              ||||||||||||||||||||
Sbjct: 118766 cctggggaatataatcaagc 118785

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>emb|CR354599.10| Zebrafish DNA sequence from clone CH211-259K16 in linkage group 13,
             complete sequence
          Length = 149455

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 227   aaacaatgcttcttctatgt 246
             ||||||||||||||||||||
Sbjct: 30338 aaacaatgcttcttctatgt 30357

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>dbj|AP006716.1| Staphylococcus haemolyticus JCSC1435 DNA, complete genome
          Length = 2685015

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 165    aaaatggtaaagcggcaatg 184
              ||||||||||||||||||||
Sbjct: 855069 aaaatggtaaagcggcaatg 855050

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>gb|AC019064.6| Homo sapiens BAC clone RP11-153O16 from 2, complete sequence
          Length = 92049

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 60    gattacagtagctcagaatt 79
             ||||||||||||||||||||
Sbjct: 84500 gattacagtagctcagaatt 84481

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>emb|BX255962.9| Zebrafish DNA sequence from clone CH211-269C21 in linkage group 25,
              complete sequence
          Length = 151830

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 149    tgaattgaatcttggtaaaa 168
              ||||||||||||||||||||
Sbjct: 113770 tgaattgaatcttggtaaaa 113751

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>emb|AL929114.8| Zebrafish DNA sequence from clone CH211-133L11 in linkage group 1,
             complete sequence
          Length = 180158

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 653   gttccttttaatgaatcaaa 672
             ||||||||||||||||||||
Sbjct: 28388 gttccttttaatgaatcaaa 28407

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>emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB 122 of Yarrowia lipolytica
          Length = 4224103

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 371     cgcgacgtcgatcgagtgttgtat 394
               ||||||| ||||||||||||||||
Sbjct: 1037636 cgcgacgacgatcgagtgttgtat 1037659

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>dbj|AP004916.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT18E24, TM0074,
             complete sequence
          Length = 131741

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 102   agcaatgctgtttgcagcaa 121
             ||||||||||||||||||||
Sbjct: 85434 agcaatgctgtttgcagcaa 85415


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,536,843
Number of Sequences: 3902068
Number of extensions: 5536843
Number of successful extensions: 97421
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 97257
Number of HSP's gapped (non-prelim): 161
length of query: 672
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 649
effective length of database: 17,143,297,704
effective search space: 11126000209896
effective search space used: 11126000209896
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result