ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags35n22
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_473385.1| Oryza sativa (japonica cultivar-group), predic... 137 4e-29
2dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 137 4e-29
3emb|AL606728.3|OSJN00102 Oryza sativa genomic DNA, chromosome 4,... 137 4e-29
4ref|XM_744614.1| Aspergillus fumigatus Af293 mRNA capping enzyme... 42 1.7
5gb|AC125121.4| Mus musculus BAC clone RP24-267O4 from chromosome... 42 1.7
6gb|AC117594.8| Mus musculus chromosome 3, clone RP23-335D16, com... 42 1.7
7ref|XM_467464.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.7
8gb|DQ215405.1| Taeniopygia guttata clone 0063P0030B12 NADH-ubiqu... 40 6.7
9gb|AC113554.9| Homo sapiens chromosome 17, clone CTD-2501B8, com... 40 6.7
10gb|AC124404.4| Mus musculus BAC clone RP24-371M10 from chromosom... 40 6.7
11emb|AL445217.3| Human DNA sequence from clone RP11-335G18 on chr... 40 6.7
12emb|AL158073.10| Human DNA sequence from clone RP11-323A7 on chr... 40 6.7
13gb|AC163296.2| Mus musculus BAC clone RP23-135F1 from chromosome... 40 6.7
14gb|AC078854.16| Homo sapiens 3q BAC RP11-480B17 (Roswell Park Ca... 40 6.7
15emb|CR354750.1| Mus musculus chromosome 6, clone tr151 strain 12... 40 6.7
16gb|AC025175.4| Homo sapiens chromosome 5 clone CTD-2081C10, comp... 40 6.7
17gb|DP000031.1| Dasypus novemcinctus target 116 genomic scaffold 40 6.7
18emb|AL844603.5| Mouse DNA sequence from clone RP24-334I20 on chr... 40 6.7
19dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.7
20gb|AC154704.2| Mus musculus BAC clone RP24-349I24 from chromosom... 40 6.7
21dbj|AP004047.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.7
22dbj|AK070855.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.7
23emb|AL049871.4|CNS0000U Human chromosome 14 DNA sequence BAC R-6... 40 6.7
24gb|AC121131.14| Mus musculus chromosome 8, clone RP23-187D7, com... 40 6.7
25gb|AC104197.14| Mus musculus chromosome 8, clone RP24-319N16, co... 40 6.7
26gb|AC115820.11| Mus musculus chromosome 8, clone RP23-479K9, com... 40 6.7
27gb|AC000114.1|HSAC000114 Human PAC clone DJ527C21 from Xq23, com... 40 6.7

>ref|XM_473385.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1536

 Score =  137 bits (69), Expect = 4e-29
 Identities = 158/188 (84%)
 Strand = Plus / Minus

                                                                        
Query: 306  atcaaggacttgtactcttcgttctcagcacaccctctacttctgagtacactcattaac 365
            ||||| |||||||||||||| |||||  | |||| ||||||||| |||||| |||| |||
Sbjct: 1508 atcaatgacttgtactcttcattctcctcgcaccgtctacttctaagtacattcatcaac 1449

                                                                        
Query: 366  ctgtcgacactctccgngtcattcttctccttgaaatatgccaggagagtctcaacattg 425
            |||||  | || || |  || || |||||||||||||  || |||||  |||||||||||
Sbjct: 1448 ctgtctgcgctttctgcatcgtttttctccttgaaattcgcaaggaggctctcaacattg 1389

                                                                        
Query: 426  gttggtcttggtctccatttacttgcacttttaactgctgtggctttctccaaacatgac 485
            || ||||||||||||||||| |||| ||||  |||||| |||||||||||||||||||||
Sbjct: 1388 gtgggtcttggtctccatttgcttggacttgcaactgcagtggctttctccaaacatgac 1329

                    
Query: 486  agagcttc 493
            || |||||
Sbjct: 1328 agtgcttc 1321



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  137 bits (69), Expect = 4e-29
 Identities = 158/188 (84%)
 Strand = Plus / Plus

                                                                            
Query: 306      atcaaggacttgtactcttcgttctcagcacaccctctacttctgagtacactcattaac 365
                ||||| |||||||||||||| |||||  | |||| ||||||||| |||||| |||| |||
Sbjct: 27229964 atcaatgacttgtactcttcattctcctcgcaccgtctacttctaagtacattcatcaac 27230023

                                                                            
Query: 366      ctgtcgacactctccgngtcattcttctccttgaaatatgccaggagagtctcaacattg 425
                |||||  | || || |  || || |||||||||||||  || |||||  |||||||||||
Sbjct: 27230024 ctgtctgcgctttctgcatcgtttttctccttgaaattcgcaaggaggctctcaacattg 27230083

                                                                            
Query: 426      gttggtcttggtctccatttacttgcacttttaactgctgtggctttctccaaacatgac 485
                || ||||||||||||||||| |||| ||||  |||||| |||||||||||||||||||||
Sbjct: 27230084 gtgggtcttggtctccatttgcttggacttgcaactgcagtggctttctccaaacatgac 27230143

                        
Query: 486      agagcttc 493
                || |||||
Sbjct: 27230144 agtgcttc 27230151



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>emb|AL606728.3|OSJN00102 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0038F03,
             complete sequence
          Length = 136656

 Score =  137 bits (69), Expect = 4e-29
 Identities = 158/188 (84%)
 Strand = Plus / Plus

                                                                         
Query: 306   atcaaggacttgtactcttcgttctcagcacaccctctacttctgagtacactcattaac 365
             ||||| |||||||||||||| |||||  | |||| ||||||||| |||||| |||| |||
Sbjct: 61053 atcaatgacttgtactcttcattctcctcgcaccgtctacttctaagtacattcatcaac 61112

                                                                         
Query: 366   ctgtcgacactctccgngtcattcttctccttgaaatatgccaggagagtctcaacattg 425
             |||||  | || || |  || || |||||||||||||  || |||||  |||||||||||
Sbjct: 61113 ctgtctgcgctttctgcatcgtttttctccttgaaattcgcaaggaggctctcaacattg 61172

                                                                         
Query: 426   gttggtcttggtctccatttacttgcacttttaactgctgtggctttctccaaacatgac 485
             || ||||||||||||||||| |||| ||||  |||||| |||||||||||||||||||||
Sbjct: 61173 gtgggtcttggtctccatttgcttggacttgcaactgcagtggctttctccaaacatgac 61232

                     
Query: 486   agagcttc 493
             || |||||
Sbjct: 61233 agtgcttc 61240



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>ref|XM_744614.1| Aspergillus fumigatus Af293 mRNA capping enzyme subunit alpha
           (Afu2g05780) partial mRNA
          Length = 1248

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 389 cttctccttgaaatatgccag 409
           |||||||||||||||||||||
Sbjct: 504 cttctccttgaaatatgccag 484



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>gb|AC125121.4| Mus musculus BAC clone RP24-267O4 from chromosome 6, complete sequence
          Length = 162573

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 16    tgatgatctgagaatttctaa 36
             |||||||||||||||||||||
Sbjct: 98303 tgatgatctgagaatttctaa 98323



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>gb|AC117594.8| Mus musculus chromosome 3, clone RP23-335D16, complete sequence
          Length = 230457

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 111    acaactgagaaaatgcaccta 131
              |||||||||||||||||||||
Sbjct: 120526 acaactgagaaaatgcaccta 120506



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>ref|XM_467464.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2665

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 449  tgcacttttaactgctgtgg 468
            ||||||||||||||||||||
Sbjct: 1534 tgcacttttaactgctgtgg 1553



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>gb|DQ215405.1| Taeniopygia guttata clone 0063P0030B12 NADH-ubiquinone
           oxidoreductase variant 2-like mRNA, complete sequence
          Length = 1273

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 105 agggaaacaactgagaaaat 124
           ||||||||||||||||||||
Sbjct: 578 agggaaacaactgagaaaat 597



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>gb|AC113554.9| Homo sapiens chromosome 17, clone CTD-2501B8, complete sequence
          Length = 179509

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 461   tgctgtggctttctccaaac 480
             ||||||||||||||||||||
Sbjct: 58975 tgctgtggctttctccaaac 58956



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>gb|AC124404.4| Mus musculus BAC clone RP24-371M10 from chromosome 12, complete sequence
          Length = 150375

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 110    aacaactgagaaaatgcacc 129
              ||||||||||||||||||||
Sbjct: 106787 aacaactgagaaaatgcacc 106806



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>emb|AL445217.3| Human DNA sequence from clone RP11-335G18 on chromosome 13 Contains the
             5' end of the EPSTI1 gene for epithelial stromal
             interaction 1 (breast) and the gene for a DNAJ
             domain-containing protein (MCJ), complete sequence
          Length = 161699

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 8     cctcctcttgatgatctgag 27
             ||||||||||||||||||||
Sbjct: 15949 cctcctcttgatgatctgag 15968



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>emb|AL158073.10| Human DNA sequence from clone RP11-323A7 on chromosome 9 Contains a
             cell division cycle associated 7 (JPO1, FLJ14722) (CDCA7)
             pseudogene, complete sequence
          Length = 186334

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 453   cttttaactgctgtggcttt 472
             ||||||||||||||||||||
Sbjct: 23749 cttttaactgctgtggcttt 23768



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>gb|AC163296.2| Mus musculus BAC clone RP23-135F1 from chromosome 12, complete sequence
          Length = 226483

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 110   aacaactgagaaaatgcacc 129
             ||||||||||||||||||||
Sbjct: 76447 aacaactgagaaaatgcacc 76466



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>gb|AC078854.16| Homo sapiens 3q BAC RP11-480B17 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 162313

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 245    aatcatatcattggtgtcca 264
              ||||||||||||||||||||
Sbjct: 156327 aatcatatcattggtgtcca 156346



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>emb|CR354750.1| Mus musculus chromosome 6, clone tr151 strain 129/Sv, complete sequence
          Length = 167508

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 135   gctgtggaataaaaagaagt 154
             ||||||||||||||||||||
Sbjct: 52132 gctgtggaataaaaagaagt 52151



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>gb|AC025175.4| Homo sapiens chromosome 5 clone CTD-2081C10, complete sequence
          Length = 166907

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 477    aaacatgacagagcttctga 496
              ||||||||||||||||||||
Sbjct: 145447 aaacatgacagagcttctga 145428



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>gb|DP000031.1| Dasypus novemcinctus target 116 genomic scaffold
          Length = 288075

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 463    ctgtggctttctccaaacat 482
              ||||||||||||||||||||
Sbjct: 241592 ctgtggctttctccaaacat 241573



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>emb|AL844603.5| Mouse DNA sequence from clone RP24-334I20 on chromosome 2, complete
             sequence
          Length = 144391

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 96    attttgtgtagggaaacaac 115
             ||||||||||||||||||||
Sbjct: 73541 attttgtgtagggaaacaac 73560



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 449      tgcacttttaactgctgtgg 468
                ||||||||||||||||||||
Sbjct: 29692382 tgcacttttaactgctgtgg 29692401



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>gb|AC154704.2| Mus musculus BAC clone RP24-349I24 from chromosome 9, complete sequence
          Length = 188875

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 126   cacctaaacgctgtggaataaaaagaag 153
             |||||||||||| | |||||||||||||
Sbjct: 49866 cacctaaacgctctagaataaaaagaag 49839



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>dbj|AP004047.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1191_G08
          Length = 172832

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 449   tgcacttttaactgctgtgg 468
             ||||||||||||||||||||
Sbjct: 61361 tgcacttttaactgctgtgg 61380



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>dbj|AK070855.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023066G02, full
            insert sequence
          Length = 2664

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 449  tgcacttttaactgctgtgg 468
            ||||||||||||||||||||
Sbjct: 1533 tgcacttttaactgctgtgg 1552



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>emb|AL049871.4|CNS0000U Human chromosome 14 DNA sequence BAC R-696D21 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 169650

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 453    cttttaactgctgtggcttt 472
              ||||||||||||||||||||
Sbjct: 137048 cttttaactgctgtggcttt 137029



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>gb|AC121131.14| Mus musculus chromosome 8, clone RP23-187D7, complete sequence
          Length = 188634

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 45    gtggtctgacagaaggcagg 64
             ||||||||||||||||||||
Sbjct: 33423 gtggtctgacagaaggcagg 33442



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>gb|AC104197.14| Mus musculus chromosome 8, clone RP24-319N16, complete sequence
          Length = 195334

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 453    cttttaactgctgtggcttt 472
              ||||||||||||||||||||
Sbjct: 189820 cttttaactgctgtggcttt 189839



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>gb|AC115820.11| Mus musculus chromosome 8, clone RP23-479K9, complete sequence
          Length = 185977

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 453    cttttaactgctgtggcttt 472
              ||||||||||||||||||||
Sbjct: 135910 cttttaactgctgtggcttt 135891



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>gb|AC000114.1|HSAC000114 Human PAC clone DJ527C21 from Xq23, complete sequence
          Length = 172151

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 453   cttttaactgctgtggcttt 472
             ||||||||||||||||||||
Sbjct: 89757 cttttaactgctgtggcttt 89738


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,561,066
Number of Sequences: 3902068
Number of extensions: 4561066
Number of successful extensions: 91337
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 91238
Number of HSP's gapped (non-prelim): 99
length of query: 498
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 476
effective length of database: 17,147,199,772
effective search space: 8162067091472
effective search space used: 8162067091472
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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