ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags36c21 |
|---|---|
| Clone Library Name | barley_pub |
>TM9S2_RAT (Q66HG5) Transmembrane 9 superfamily protein member 2 precursor| Length = 663 Score = 154 bits (388), Expect = 3e-37 Identities = 72/137 (52%), Positives = 91/137 (66%) Frame = -3 Query: 671 GGILPFGAVFIELFFILTSIWLNQXXXXXXXXXXXXXXXXVTCAEITIVLCYFQLCSEDY 492 GGILPFG +FI+LFFIL SIW +Q +TC+E TI+LCYF LC+EDY Sbjct: 527 GGILPFGCIFIQLFFILNSIWSHQMYYMFGFLFLVFIILVITCSEATILLCYFHLCAEDY 586 Query: 491 HWWWRAYLTAGSSXXXXXXXXXXXXFNKLEITKLVSGILYFGYMLIISYAFFVLTGTIGF 312 HW WR++LT+G + F+KL+IT S ILYFGY +I+ FF+ TGTIGF Sbjct: 587 HWQWRSFLTSGFTAVYFLVYAIHYFFSKLQITGTASTILYFGYTMIMVLIFFLFTGTIGF 646 Query: 311 YACFWFVRKIYASVKID 261 +ACFWFV KIY+ VK+D Sbjct: 647 FACFWFVTKIYSVVKVD 663
>TM9S2_PONPY (Q5R8Y6) Transmembrane 9 superfamily protein member 2 precursor| Length = 663 Score = 154 bits (388), Expect = 3e-37 Identities = 72/137 (52%), Positives = 91/137 (66%) Frame = -3 Query: 671 GGILPFGAVFIELFFILTSIWLNQXXXXXXXXXXXXXXXXVTCAEITIVLCYFQLCSEDY 492 GGILPFG +FI+LFFIL SIW +Q +TC+E TI+LCYF LC+EDY Sbjct: 527 GGILPFGCIFIQLFFILNSIWSHQMYYMFGFLFLVFIILVITCSEATILLCYFHLCAEDY 586 Query: 491 HWWWRAYLTAGSSXXXXXXXXXXXXFNKLEITKLVSGILYFGYMLIISYAFFVLTGTIGF 312 HW WR++LT+G + F+KL+IT S ILYFGY +I+ FF+ TGTIGF Sbjct: 587 HWQWRSFLTSGFTAVYFLIYAVHYFFSKLQITGTASTILYFGYTMIMVLIFFLFTGTIGF 646 Query: 311 YACFWFVRKIYASVKID 261 +ACFWFV KIY+ VK+D Sbjct: 647 FACFWFVTKIYSVVKVD 663
>TM9S2_HUMAN (Q99805) Transmembrane 9 superfamily protein member 2 precursor| (p76) Length = 663 Score = 154 bits (388), Expect = 3e-37 Identities = 72/137 (52%), Positives = 91/137 (66%) Frame = -3 Query: 671 GGILPFGAVFIELFFILTSIWLNQXXXXXXXXXXXXXXXXVTCAEITIVLCYFQLCSEDY 492 GGILPFG +FI+LFFIL SIW +Q +TC+E TI+LCYF LC+EDY Sbjct: 527 GGILPFGCIFIQLFFILNSIWSHQMYYMFGFLFLVFIILVITCSEATILLCYFHLCAEDY 586 Query: 491 HWWWRAYLTAGSSXXXXXXXXXXXXFNKLEITKLVSGILYFGYMLIISYAFFVLTGTIGF 312 HW WR++LT+G + F+KL+IT S ILYFGY +I+ FF+ TGTIGF Sbjct: 587 HWQWRSFLTSGFTAVYFLIYAVHYFFSKLQITGTASTILYFGYTMIMVLIFFLFTGTIGF 646 Query: 311 YACFWFVRKIYASVKID 261 +ACFWFV KIY+ VK+D Sbjct: 647 FACFWFVTKIYSVVKVD 663
>TM9S2_MOUSE (P58021) Transmembrane 9 superfamily protein member 2 precursor| Length = 662 Score = 154 bits (388), Expect = 3e-37 Identities = 72/137 (52%), Positives = 91/137 (66%) Frame = -3 Query: 671 GGILPFGAVFIELFFILTSIWLNQXXXXXXXXXXXXXXXXVTCAEITIVLCYFQLCSEDY 492 GGILPFG +FI+LFFIL SIW +Q +TC+E TI+LCYF LC+EDY Sbjct: 526 GGILPFGCIFIQLFFILNSIWSHQMYYMFGFLFLVFIILVITCSEATILLCYFHLCAEDY 585 Query: 491 HWWWRAYLTAGSSXXXXXXXXXXXXFNKLEITKLVSGILYFGYMLIISYAFFVLTGTIGF 312 HW WR++LT+G + F+KL+IT S ILYFGY +I+ FF+ TGTIGF Sbjct: 586 HWQWRSFLTSGFTAVYFLIYAIHYFFSKLQITGTASTILYFGYTMIMVLIFFLFTGTIGF 645 Query: 311 YACFWFVRKIYASVKID 261 +ACFWFV KIY+ VK+D Sbjct: 646 FACFWFVTKIYSVVKVD 662
>TM9S4_HUMAN (Q92544) Transmembrane 9 superfamily protein member 4| Length = 625 Score = 146 bits (368), Expect = 6e-35 Identities = 68/136 (50%), Positives = 90/136 (66%) Frame = -3 Query: 668 GILPFGAVFIELFFILTSIWLNQXXXXXXXXXXXXXXXXVTCAEITIVLCYFQLCSEDYH 489 GILPFGA+FIELFFI ++IW NQ V+C++I+IV+ YFQLC+EDY Sbjct: 490 GILPFGAMFIELFFIFSAIWENQFYYLFGFLFLVFIILVVSCSQISIVMVYFQLCAEDYR 549 Query: 488 WWWRAYLTAGSSXXXXXXXXXXXXFNKLEITKLVSGILYFGYMLIISYAFFVLTGTIGFY 309 WWWR +L +G S NKL+I + + +LYFGY ++ +F++LTGTIGFY Sbjct: 550 WWWRNFLVSGGSAFYVLVYAIFYFVNKLDIVEFIPSLLYFGYTALMVLSFWLLTGTIGFY 609 Query: 308 ACFWFVRKIYASVKID 261 A + FVRKIYA+VKID Sbjct: 610 AAYMFVRKIYAAVKID 625
>TM9S1_PONPY (Q5R8F1) Transmembrane 9 superfamily protein member 1 precursor| Length = 606 Score = 101 bits (252), Expect = 2e-21 Identities = 46/137 (33%), Positives = 71/137 (51%) Frame = -3 Query: 671 GGILPFGAVFIELFFILTSIWLNQXXXXXXXXXXXXXXXXVTCAEITIVLCYFQLCSEDY 492 GG LPF A+ +EL++I ++W + A I+I L YFQL EDY Sbjct: 470 GGFLPFSAISVELYYIFATVWGREQYTLYGILFFVFAILLSVGACISIALTYFQLSGEDY 529 Query: 491 HWWWRAYLTAGSSXXXXXXXXXXXXFNKLEITKLVSGILYFGYMLIISYAFFVLTGTIGF 312 WWWR+ L+ GS+ + ++ V + +FGY L+ Y FF++ GTI F Sbjct: 530 RWWWRSVLSVGSTGLFIFLYSVFYYARRSNMSGAVQTVEFFGYSLLTGYVFFLMLGTISF 589 Query: 311 YACFWFVRKIYASVKID 261 ++ F+R IY ++K+D Sbjct: 590 FSSLKFIRYIYVNLKMD 606
>TM9S1_MOUSE (Q9DBU0) Transmembrane 9 superfamily protein member 1 precursor| Length = 606 Score = 101 bits (252), Expect = 2e-21 Identities = 46/137 (33%), Positives = 71/137 (51%) Frame = -3 Query: 671 GGILPFGAVFIELFFILTSIWLNQXXXXXXXXXXXXXXXXVTCAEITIVLCYFQLCSEDY 492 GG LPF A+ +EL++I ++W + A I+I L YFQL EDY Sbjct: 470 GGFLPFSAISVELYYIFATVWGREQYTLYGILFFVFAILLSVGACISIALTYFQLSGEDY 529 Query: 491 HWWWRAYLTAGSSXXXXXXXXXXXXFNKLEITKLVSGILYFGYMLIISYAFFVLTGTIGF 312 WWWR+ L+ GS+ + ++ V + +FGY L+ Y FF++ GTI F Sbjct: 530 RWWWRSVLSVGSTGLFIFLYSVFYYARRSNMSGAVQTVEFFGYSLLTGYVFFLMLGTISF 589 Query: 311 YACFWFVRKIYASVKID 261 ++ F+R IY ++K+D Sbjct: 590 FSSLKFIRYIYVNLKMD 606
>TM9S1_HUMAN (O15321) Transmembrane 9 superfamily protein member 1 precursor| (hMP70) Length = 606 Score = 101 bits (252), Expect = 2e-21 Identities = 46/137 (33%), Positives = 71/137 (51%) Frame = -3 Query: 671 GGILPFGAVFIELFFILTSIWLNQXXXXXXXXXXXXXXXXVTCAEITIVLCYFQLCSEDY 492 GG LPF A+ +EL++I ++W + A I+I L YFQL EDY Sbjct: 470 GGFLPFSAISVELYYIFATVWGREQYTLYGILFFVFAILLSVGACISIALTYFQLSGEDY 529 Query: 491 HWWWRAYLTAGSSXXXXXXXXXXXXFNKLEITKLVSGILYFGYMLIISYAFFVLTGTIGF 312 WWWR+ L+ GS+ + ++ V + +FGY L+ Y FF++ GTI F Sbjct: 530 RWWWRSVLSVGSTGLFIFLYSVFYYARRSNMSGAVQTVEFFGYSLLTGYVFFLMLGTISF 589 Query: 311 YACFWFVRKIYASVKID 261 ++ F+R IY ++K+D Sbjct: 590 FSSLKFIRYIYVNLKMD 606
>TM9S3_HUMAN (Q9HD45) Transmembrane 9 superfamily protein member 3 precursor| (SM-11044-binding protein) (EP70-P-iso) Length = 589 Score = 97.1 bits (240), Expect = 4e-20 Identities = 52/137 (37%), Positives = 71/137 (51%) Frame = -3 Query: 671 GGILPFGAVFIELFFILTSIWLNQXXXXXXXXXXXXXXXXVTCAEITIVLCYFQLCSEDY 492 GGILPFG++FIE++FI TS W + + +TIV YF L +EDY Sbjct: 453 GGILPFGSIFIEMYFIFTSFWAYKIYYVYGFMMLVLVILCIVTVCVTIVCTYFLLNAEDY 512 Query: 491 HWWWRAYLTAGSSXXXXXXXXXXXXFNKLEITKLVSGILYFGYMLIISYAFFVLTGTIGF 312 W W ++L+A S+ F K ++ L YFGYM + S A ++ G IG+ Sbjct: 513 RWQWTSFLSAASTAIYVYMYSFYYYFFKTKMYGLFQTSFYFGYMAVFSTALGIMCGAIGY 572 Query: 311 YACFWFVRKIYASVKID 261 FVRKIY +VKID Sbjct: 573 MGTSAFVRKIYTNVKID 589
>TM9S3_MOUSE (Q9ET30) Transmembrane 9 superfamily protein member 3 precursor| Length = 587 Score = 97.1 bits (240), Expect = 4e-20 Identities = 52/137 (37%), Positives = 71/137 (51%) Frame = -3 Query: 671 GGILPFGAVFIELFFILTSIWLNQXXXXXXXXXXXXXXXXVTCAEITIVLCYFQLCSEDY 492 GGILPFG++FIE++FI TS W + + +TIV YF L +EDY Sbjct: 451 GGILPFGSIFIEMYFIFTSFWAYKIYYVYGFMMLVLVILCIVTVCVTIVCTYFLLNAEDY 510 Query: 491 HWWWRAYLTAGSSXXXXXXXXXXXXFNKLEITKLVSGILYFGYMLIISYAFFVLTGTIGF 312 W W ++L+A S+ F K ++ L YFGYM + S A ++ G IG+ Sbjct: 511 RWQWTSFLSAASTAIYVYMYSFYYYFFKTKMYGLFQTSFYFGYMAVFSTALGIMCGAIGY 570 Query: 311 YACFWFVRKIYASVKID 261 FVRKIY +VKID Sbjct: 571 MGTSAFVRKIYTNVKID 587
>EMP70_YEAST (P32802) Endosomal P24A protein precursor (70 kDa endomembrane| protein) (Pheromone alpha-factor transporter) (Acidic 24 kDa late endocytic intermediate component) Length = 667 Score = 93.6 bits (231), Expect = 5e-19 Identities = 46/136 (33%), Positives = 74/136 (54%) Frame = -3 Query: 668 GILPFGAVFIELFFILTSIWLNQXXXXXXXXXXXXXXXXVTCAEITIVLCYFQLCSEDYH 489 GI PFG++ +EL+FI TS+W N+ +T + +TI++ Y LC E++ Sbjct: 533 GIFPFGSIAVELYFIYTSLWFNKIFYMFGFLFFSFLLLTLTSSLVTILITYHSLCLENWK 592 Query: 488 WWWRAYLTAGSSXXXXXXXXXXXXFNKLEITKLVSGILYFGYMLIISYAFFVLTGTIGFY 309 W WR ++ G+ F K ++ + +LY GY +IS ++TG+IGF Sbjct: 593 WQWRGFIIGGAG-CALYVFIHSILFTKFKLGGFTTIVLYVGYSSVISLLCCLVTGSIGFI 651 Query: 308 ACFWFVRKIYASVKID 261 + FVRKIY+S+K+D Sbjct: 652 SSMLFVRKIYSSIKVD 667
>TM9S1_RAT (Q66HF2) Transmembrane 9 superfamily protein member 1 precursor| Length = 589 Score = 90.5 bits (223), Expect = 4e-18 Identities = 41/130 (31%), Positives = 66/130 (50%) Frame = -3 Query: 650 AVFIELFFILTSIWLNQXXXXXXXXXXXXXXXXVTCAEITIVLCYFQLCSEDYHWWWRAY 471 A+ +EL++I ++W + A I+I L YFQL EDY WWWR+ Sbjct: 460 AISVELYYIFATVWGREQYTLYGILFFVFAILLSVGACISIALTYFQLSGEDYRWWWRSV 519 Query: 470 LTAGSSXXXXXXXXXXXXFNKLEITKLVSGILYFGYMLIISYAFFVLTGTIGFYACFWFV 291 L+ GS+ + ++ V + +FGY L+ Y FF++ GTI F++ F+ Sbjct: 520 LSVGSTGLFIFLYSVFYYARRSNMSGAVQTVEFFGYSLLTGYVFFLMLGTISFFSSLKFI 579 Query: 290 RKIYASVKID 261 R IY ++K+D Sbjct: 580 RYIYVNLKMD 589
>YEU3_YEAST (P40071) Hypothetical protein YER113C precursor| Length = 706 Score = 37.7 bits (86), Expect = 0.032 Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 8/138 (5%) Frame = -3 Query: 668 GILPFGAVFIELFFILTSIWLNQXXXXXXXXXXXXXXXXVTCA--EITIVLCYF--QLCS 501 GI P +++E+ ++ S+WL + + EI+I+ Y + C Sbjct: 563 GIFPLLVIYVEMQYVYKSLWLEKTTFYYFYGFLFLSIILLCVLTMEISIIGSYLLMRFCF 622 Query: 500 EDY----HWWWRAYLTAGSSXXXXXXXXXXXXFNKLEITKLVSGILYFGYMLIISYAFFV 333 ED +W W+ + S F L I S ++ Y LI + + Sbjct: 623 EDKVVRNNWRWKCFEMGFSGGVYMELYSLYYIFAVLNIHGFSSILISICYSLIFNVMCSL 682 Query: 332 LTGTIGFYACFWFVRKIY 279 G + + WF+ KIY Sbjct: 683 GLGALSYLTASWFINKIY 700
>DPO3A_THEAQ (Q9XDH5) DNA polymerase III alpha subunit (EC 2.7.7.7)| Length = 1220 Score = 30.4 bits (67), Expect = 5.1 Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 7/66 (10%) Frame = +3 Query: 120 RLHIFYQNHGIPSQIPVLSTMYDIARKPCTGYALEADGKLILK-------VAISVDLHRS 278 R I QNHG+P Q V + + ARK G DG + K V +++ + Sbjct: 176 RFFIEIQNHGLPEQKKVNQVLKEFARKYGLGMVATNDGHYVRKEDARAHEVLLAIQSKTT 235 Query: 279 IDLPHK 296 +D P + Sbjct: 236 LDDPER 241
>TOP1_ECOLI (P06612) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)| (Omega-protein) (Relaxing enzyme) (Untwisting enzyme) (Swivelase) Length = 865 Score = 30.4 bits (67), Expect = 5.1 Identities = 14/47 (29%), Positives = 24/47 (51%) Frame = +2 Query: 98 SGDSYSYQATHILPKPWNPISNPSSQHHV*YRKKTLYGICSRSRRET 238 SG++ + Q TH KP+ P++ +Q V +K Y + R + T Sbjct: 230 SGEALALQVTHQNDKPFRPVNKEQTQAAVSLLEKARYSVLEREDKPT 276 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 81,735,944 Number of Sequences: 219361 Number of extensions: 1480500 Number of successful extensions: 3552 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 3446 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3540 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6541540170 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
