| Clone Name | rbags36c20 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC005610.1| Homo sapiens chromosome 5, PAC clone 502L6 (LBNL H156), complete sequence Length = 223408 Score = 42.1 bits (21), Expect = 0.63 Identities = 21/21 (100%) Strand = Plus / Plus Query: 103 aaatcccacaccaatcacttc 123 ||||||||||||||||||||| Sbjct: 103551 aaatcccacaccaatcacttc 103571
>gb|AC010626.6| Homo sapiens chromosome 5 clone CTD-2138K21, complete sequence Length = 160312 Score = 42.1 bits (21), Expect = 0.63 Identities = 21/21 (100%) Strand = Plus / Plus Query: 103 aaatcccacaccaatcacttc 123 ||||||||||||||||||||| Sbjct: 158202 aaatcccacaccaatcacttc 158222
>gb|BC074197.1| Xenopus laevis cDNA clone MGC:82101 IMAGE:7011823, complete cds Length = 4871 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 19 tcagttgttgccatgggcac 38 |||||||||||||||||||| Sbjct: 1854 tcagttgttgccatgggcac 1835
>gb|AC122730.27| Medicago truncatula clone mth2-36p5, complete sequence Length = 127163 Score = 40.1 bits (20), Expect = 2.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 39 ttttgatactttgttacatgtttc 62 ||||||||||||||| |||||||| Sbjct: 62838 ttttgatactttgttgcatgtttc 62815
>gb|BC039409.1| Homo sapiens kinase D-interacting substance of 220 kDa, mRNA (cDNA clone IMAGE:5301591) Length = 1503 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 47 ctttgttacatgtttccaaa 66 |||||||||||||||||||| Sbjct: 808 ctttgttacatgtttccaaa 789
>gb|BC094714.1| Homo sapiens kinase D-interacting substance of 220 kDa, mRNA (cDNA clone IMAGE:30400609), partial cds Length = 2707 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 47 ctttgttacatgtttccaaa 66 |||||||||||||||||||| Sbjct: 1996 ctttgttacatgtttccaaa 1977
>emb|CR617859.1| full-length cDNA clone CS0DF001YJ19 of Fetal brain of Homo sapiens (human) Length = 1600 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 47 ctttgttacatgtttccaaa 66 |||||||||||||||||||| Sbjct: 956 ctttgttacatgtttccaaa 937
>dbj|AK023926.1| Homo sapiens cDNA FLJ13864 fis, clone THYRO1001173 Length = 2202 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 47 ctttgttacatgtttccaaa 66 |||||||||||||||||||| Sbjct: 1521 ctttgttacatgtttccaaa 1502
>gb|AC012495.9| Homo sapiens BAC clone RP11-327F6 from 2, complete sequence Length = 215359 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 47 ctttgttacatgtttccaaa 66 |||||||||||||||||||| Sbjct: 5822 ctttgttacatgtttccaaa 5841
>ref|NM_020738.1| Homo sapiens kinase D-interacting substance of 220 kDa (KIDINS220), mRNA Length = 7264 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 47 ctttgttacatgtttccaaa 66 |||||||||||||||||||| Sbjct: 6584 ctttgttacatgtttccaaa 6565
>emb|BX640878.1|HSM806995 Homo sapiens mRNA; cDNA DKFZp686A19189 (from clone DKFZp686A19189) Length = 3807 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 47 ctttgttacatgtttccaaa 66 |||||||||||||||||||| Sbjct: 3107 ctttgttacatgtttccaaa 3088
>emb|CT573052.2| Medicago truncatula chromosome 5 clone mth2-60f21, COMPLETE SEQUENCE Length = 131869 Score = 40.1 bits (20), Expect = 2.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 39 ttttgatactttgttacatgtttc 62 ||||||||||||||| |||||||| Sbjct: 10149 ttttgatactttgttgcatgtttc 10126
>gb|AC111065.20| Mus musculus chromosome 19, clone RP23-315E4, complete sequence Length = 193977 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 43 gatactttgttacatgtttc 62 |||||||||||||||||||| Sbjct: 53000 gatactttgttacatgtttc 52981
>emb|CR942690.2| Xenopus tropicalis finished cDNA, clone TNeu111i02 Length = 3931 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 19 tcagttgttgccatgggcac 38 |||||||||||||||||||| Sbjct: 1710 tcagttgttgccatgggcac 1691
>emb|BX538189.1|HSM806413 Homo sapiens mRNA; cDNA DKFZp686H14204 (from clone DKFZp686H14204) Length = 3887 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 47 ctttgttacatgtttccaaa 66 |||||||||||||||||||| Sbjct: 3188 ctttgttacatgtttccaaa 3169
>emb|CT027664.2| Medicago truncatula chromosome 5 clone mth2-160e5, COMPLETE SEQUENCE Length = 146823 Score = 40.1 bits (20), Expect = 2.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 39 ttttgatactttgttacatgtttc 62 ||||||||||||||| |||||||| Sbjct: 12066 ttttgatactttgttgcatgtttc 12089
>emb|CR956368.6| M.truncatula DNA sequence from clone MTH2-64D19 on chromosome 3, complete sequence Length = 139040 Score = 40.1 bits (20), Expect = 2.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 39 ttttgatactttgttacatgtttc 62 ||||||||||||||| |||||||| Sbjct: 38976 ttttgatactttgttgcatgtttc 38999
>gb|L20508.1|BTVCOREPRO Bluetongue virus core protein (VP1) RNA, complete cds Length = 3944 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 3 aatacgtcgtatatgatcag 22 |||||||||||||||||||| Sbjct: 143 aatacgtcgtatatgatcag 124
>gb|M29258.1|XELHMGCOA X.laevis 3-hydroxy-3-methylglutaryl-coenzyme A reductase mRNA, complete cds Length = 2970 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 19 tcagttgttgccatgggcac 38 |||||||||||||||||||| Sbjct: 1775 tcagttgttgccatgggcac 1756
>dbj|AB033076.2| Homo sapiens mRNA for KIAA1250 protein, partial cds Length = 7264 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 47 ctttgttacatgtttccaaa 66 |||||||||||||||||||| Sbjct: 6584 ctttgttacatgtttccaaa 6565
>gb|AC113538.14| Mus musculus chromosome 8, clone RP23-118F24, complete sequence Length = 206380 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 37 acttttgatactttgttac 55 ||||||||||||||||||| Sbjct: 84816 acttttgatactttgttac 84798
>gb|AC102525.8| Mus musculus chromosome 8, clone RP24-133K20, complete sequence Length = 162463 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 37 acttttgatactttgttac 55 ||||||||||||||||||| Sbjct: 128789 acttttgatactttgttac 128771
>ref|XM_634800.1| Dictyostelium discoideum hypothetical protein (DDB0186367), partial mRNA Length = 1173 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 52 ttacatgtttccaaacaac 70 ||||||||||||||||||| Sbjct: 949 ttacatgtttccaaacaac 931
>gb|AE017128.1| Yersinia pestis biovar Medievalis str. 91001 section 2 of 16 of the complete genome Length = 290803 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 169 ccccagagcacaatcaaag 187 ||||||||||||||||||| Sbjct: 290033 ccccagagcacaatcaaag 290015
>gb|AE009952.1| Yersinia pestis KIM, complete genome Length = 4600755 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 169 ccccagagcacaatcaaag 187 ||||||||||||||||||| Sbjct: 725046 ccccagagcacaatcaaag 725028
>emb|CR391913.7| Zebrafish DNA sequence from clone DKEY-118P6 in linkage group 5, complete sequence Length = 190731 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 42 tgatactttgttacatgtt 60 ||||||||||||||||||| Sbjct: 44416 tgatactttgttacatgtt 44398
>emb|AL669876.7| Human DNA sequence from clone RP11-190L2 on chromosome X, complete sequence Length = 90143 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 34 ggcacttttgatactttgt 52 ||||||||||||||||||| Sbjct: 46586 ggcacttttgatactttgt 46604
>emb|AL357873.17| Human DNA sequence from clone RP11-344F13 on chromosome 1 Contains a novel gene, complete sequence Length = 143508 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 177 cacaatcaaagttcattct 195 ||||||||||||||||||| Sbjct: 120364 cacaatcaaagttcattct 120382
>emb|AL136132.15| Human DNA sequence from clone RP11-141M24 on chromosome 13q33.1-34 Contains part of a novel gene, possible ortholog of rat myosin heavy chain Myr 8 (Loc192253), complete sequence Length = 173738 Score = 38.2 bits (19), Expect = 9.9 Identities = 22/23 (95%) Strand = Plus / Minus Query: 28 gccatgggcacttttgatacttt 50 ||||||| ||||||||||||||| Sbjct: 146398 gccatggacacttttgatacttt 146376
>ref|XM_966491.1| PREDICTED: Tribolium castaneum similar to CG31302-PA, isoform A (LOC660242), mRNA Length = 2871 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 65 aacaacaaccgacacaaca 83 ||||||||||||||||||| Sbjct: 1664 aacaacaaccgacacaaca 1682
>emb|BX936398.1| Yersinia pseudotuberculosis IP32953 genome, complete sequence Length = 4744671 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 169 ccccagagcacaatcaaag 187 ||||||||||||||||||| Sbjct: 521010 ccccagagcacaatcaaag 520992
>emb|AJ414142.1| Yersinia pestis strain CO92 complete genome; segment 2/20 Length = 214050 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 169 ccccagagcacaatcaaag 187 ||||||||||||||||||| Sbjct: 111686 ccccagagcacaatcaaag 111668
>emb|BX255951.13| Zebrafish DNA sequence from clone DKEYP-31E5 in linkage group 5, complete sequence Length = 171425 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 42 tgatactttgttacatgtt 60 ||||||||||||||||||| Sbjct: 165381 tgatactttgttacatgtt 165363
>gb|AC005066.1|AC005066 Homo sapiens BAC clone CTB-118P15 from 8q21, complete sequence Length = 226916 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 17 gatcagttgttgccatggg 35 ||||||||||||||||||| Sbjct: 130151 gatcagttgttgccatggg 130133
>emb|AL732544.12| Zebrafish DNA sequence from clone BUSM1-6I1 in linkage group 7, complete sequence Length = 135141 Score = 38.2 bits (19), Expect = 9.9 Identities = 25/27 (92%) Strand = Plus / Minus Query: 62 ccaaacaacaaccgacacaacaaagat 88 |||||||||||||| || ||||||||| Sbjct: 94296 ccaaacaacaaccgccaaaacaaagat 94270
>gb|AE015924.1| Porphyromonas gingivalis W83, complete genome Length = 2343476 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 2 caatacgtcgtatatgatc 20 ||||||||||||||||||| Sbjct: 240254 caatacgtcgtatatgatc 240272
>emb|X12819.1|BTV10VP1 Bluetongue virus gene for capsid protein VP1, genomic RNA Length = 3944 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 4 atacgtcgtatatgatcag 22 ||||||||||||||||||| Sbjct: 142 atacgtcgtatatgatcag 124
>gb|L20447.1|BTVVP1D Bluetongue virus RNA-directed RNA polymerase (VP1) gene, complete cds Length = 3944 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 4 atacgtcgtatatgatcag 22 ||||||||||||||||||| Sbjct: 142 atacgtcgtatatgatcag 124
>gb|L20446.1|BTVVP1C Bluetongue virus RNA-directed RNA polymerase (VP1) gene, complete cds Length = 3944 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 4 atacgtcgtatatgatcag 22 ||||||||||||||||||| Sbjct: 142 atacgtcgtatatgatcag 124
>gb|L20445.1|BTVVP1B Bluetongue virus RNA-directed RNA polymerase (VP1) gene, complete cds Length = 3944 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 4 atacgtcgtatatgatcag 22 ||||||||||||||||||| Sbjct: 142 atacgtcgtatatgatcag 124
>emb|AL645816.1| Human DNA sequence from clone RP13-209P2 on chromosome Xq21.31-22.1, complete sequence Length = 42108 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 34 ggcacttttgatactttgt 52 ||||||||||||||||||| Sbjct: 41662 ggcacttttgatactttgt 41644
>dbj|AB006605.1| Petunia x hybrida mRNA for ZPT3-3, complete cds Length = 1200 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 44 atactttgttacatgtttc 62 ||||||||||||||||||| Sbjct: 604 atactttgttacatgtttc 586
>dbj|AB035133.1| Petunia x hybrida gene for C2H2 zinc-finger protein ZPT3-3, complete cds Length = 3444 Score = 38.2 bits (19), Expect = 9.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 44 atactttgttacatgtttc 62 ||||||||||||||||||| Sbjct: 2848 atactttgttacatgtttc 2830 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,623,443 Number of Sequences: 3902068 Number of extensions: 1623443 Number of successful extensions: 119779 Number of sequences better than 10.0: 43 Number of HSP's better than 10.0 without gapping: 43 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 119638 Number of HSP's gapped (non-prelim): 141 length of query: 199 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 177 effective length of database: 17,147,199,772 effective search space: 3035054359644 effective search space used: 3035054359644 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)