ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags35n16
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_493831.1| Oryza sativa (japonica cultivar-group), mRNA 78 5e-11
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 78 5e-11
3gb|AC084405.6| Oryza sativa chromosome 3 BAC OSJNBa0044H10 genom... 78 5e-11
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 78 5e-11
5dbj|AK067596.1| Oryza sativa (japonica cultivar-group) cDNA clon... 78 5e-11
6emb|AL360015.25| Human DNA sequence from clone RP11-344F20 on ch... 44 0.64
7gb|AC005079.6|AC005079 Homo sapiens BAC clone CTA-252P22 from 7,... 44 0.64
8emb|AL596203.6| Zebrafish DNA sequence from clone BUSM1-94E17 in... 44 0.64
9gb|AC117796.12| Mus musculus chromosome 1, clone RP24-554P6, com... 44 0.64
10emb|CR376732.12| Zebrafish DNA sequence from clone DKEY-146H23 i... 44 0.64
11gb|AF016682.2| Caenorhabditis elegans cosmid T07D3, complete seq... 42 2.5
12gb|AC099741.4| Mus musculus strain C57BL6/J chromosome 6 clone R... 42 2.5
13gb|AC125177.4| Mus musculus BAC clone RP23-315H8 from chromosome... 42 2.5
14emb|X56259.1|SCKRS1 S.cerevisiae strain 7305b mutant KRS1 gene f... 42 2.5
15emb|CR391968.4| Human DNA sequence from clone WI2-921B19 on chro... 42 2.5
16gb|AC060788.11| Homo sapiens chromosome 8, clone CTD-2008O4, com... 42 2.5
17ref|NM_061442.3| Caenorhabditis elegans T07D3.9a (T07D3.9) mRNA,... 42 2.5
18ref|NM_182190.3| Caenorhabditis elegans T07D3.9b (T07D3.9) mRNA,... 42 2.5
19dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.5
20gb|AC154562.2| Mus musculus BAC clone RP23-400N5 from chromosome... 42 2.5
21dbj|AP005688.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.5
22gb|AC118721.9| Mus musculus chromosome 8, clone RP24-157I20, com... 42 2.5
23dbj|AP003172.2| Homo sapiens genomic DNA, chromosome 11q clone:R... 42 2.5
24emb|AL929212.8| Mouse DNA sequence from clone RP23-65G6 on chrom... 42 2.5
25ref|NM_115520.2| Arabidopsis thaliana unknown protein AT3G56610 ... 40 10.0
26gb|BC070852.1| Xenopus laevis hypothetical protein MGC84592, mRN... 40 10.0
27gb|AY488284.1| Melidectes ochromelas NADH dehydrogenase subunit ... 40 10.0
28gb|AY488283.1| Melidectes belfordi NADH dehydrogenase subunit 2 ... 40 10.0
29gb|AF228660.5| Homo sapiens chromosome 8 clone RP11-37N22 map q2... 40 10.0
30gb|BT012368.1| Arabidopsis thaliana At3g56610 mRNA, complete cds 40 10.0
31gb|BT012204.1| Arabidopsis thaliana At3g56610 mRNA, complete cds 40 10.0
32gb|AC007027.3| Homo sapiens PAC clone RP5-832O14 from 7, complet... 40 10.0
33emb|BX062819.1|CNS09KMV Single read from an extremity of a full-... 40 10.0
34emb|BX061934.1|CNS09JYA Single read from an extremity of a full-... 40 10.0
35emb|AL163972.1|ATT5P19 Arabidopsis thaliana DNA chromosome 3, BA... 40 10.0
36emb|BX548058.9| Zebrafish DNA sequence from clone CH211-181H11 i... 40 10.0
37gb|AF243495.2| Homo sapiens hepatocellular carcinoma-associated ... 40 10.0
38gb|AC090921.7| Homo sapiens chromosome 8, clone RP11-37N22, comp... 40 10.0
39gb|AC093863.3| Homo sapiens BAC clone RP11-552I10 from 4, comple... 40 10.0
40gb|AC113015.12| Mus musculus chromosome 1, clone RP23-180E19, co... 40 10.0
41ref|NM_015310.2| Homo sapiens pleckstrin and Sec7 domain contain... 40 10.0
42ref|NM_206909.1| Homo sapiens pleckstrin and Sec7 domain contain... 40 10.0
43gb|AC158534.2| Mus musculus BAC clone RP23-32O6 from chromosome ... 40 10.0
44gb|AC131791.4| Mus musculus BAC clone RP24-462N24 from chromosom... 40 10.0
45gb|AC154014.4| Mus musculus 6 BAC RP24-409C18 (Roswell Park Canc... 40 10.0
46dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 10.0
47gb|AC090497.2|AC090497 Homo sapiens chromosome 7 clone RP11-643E... 40 10.0
48gb|AC120051.5| Homo sapiens chromosome 8, clone RP11-809L8, comp... 40 10.0
49gb|AC154017.7| Mus musculus 6 BAC RP24-156H18 (Roswell Park Canc... 40 10.0
50gb|AC133794.2| Homo sapiens 12 BAC RP11-193M21 (Roswell Park Can... 40 10.0
51gb|AC083862.2|AC083862 Homo sapiens chromosome 7 clone RP11-134L... 40 10.0
52gb|AC012665.8| Homo sapiens BAC clone RP11-19E11 from 2, complet... 40 10.0
53gb|AC109183.17| Mus musculus chromosome 15, clone RP24-86P1, com... 40 10.0
54dbj|AP005745.2| Oryza sativa (japonica cultivar-group) genomic D... 40 10.0
55emb|BX647406.1|HSM807551 Homo sapiens mRNA; cDNA DKFZp686E1349 (... 40 10.0
56emb|AL391833.10| Human DNA sequence from clone RP11-307K1 on chr... 40 10.0
57emb|BX548060.7| Zebrafish DNA sequence from clone CH211-117I10 i... 40 10.0
58emb|BX088545.7| Zebrafish DNA sequence from clone DKEY-60G19 in ... 40 10.0
59emb|CR384057.25| Zebrafish DNA sequence from clone CH211-243K10 ... 40 10.0
60dbj|AP008242.1| Lotus japonicus genomic DNA, chromosome 4, clone... 40 10.0
61emb|AL954178.8| Mouse DNA sequence from clone RP23-21J10 on chro... 40 10.0
62emb|AL844199.8| Mouse DNA sequence from clone RP23-39F22 on chro... 40 10.0
63dbj|AP000888.3| Homo sapiens genomic DNA, chromosome 6q25.2, clo... 40 10.0
64dbj|AB023159.2| Homo sapiens mRNA for KIAA0942 protein, partial cds 40 10.0 
>ref|XM_493831.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2388

 Score = 77.8 bits (39), Expect = 5e-11
 Identities = 75/87 (86%)
 Strand = Plus / Minus

                                                                        
Query: 641  atggacattcaattaccaagcatgccctcagaacaaatgaacatgccattggggtagcat 700
            |||| ||||| |||||||  |||| ||||||||| || || |||||||||||||||||||
Sbjct: 2281 atgggcattccattaccagacatgtcctcagaacgaacgagcatgccattggggtagcat 2222

                                       
Query: 701  agaaaggaatgactgtggagcagctct 727
            |||||||||| |  || ||||||||||
Sbjct: 2221 agaaaggaataatcgtagagcagctct 2195



 Score = 40.1 bits (20), Expect = 10.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 553  acaaagtagacatccaattcatca 576
            ||||| ||||||||||||||||||
Sbjct: 2369 acaaaatagacatccaattcatca 2346
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 77.8 bits (39), Expect = 5e-11
 Identities = 75/87 (86%)
 Strand = Plus / Plus

                                                                           
Query: 641     atggacattcaattaccaagcatgccctcagaacaaatgaacatgccattggggtagcat 700
               |||| ||||| |||||||  |||| ||||||||| || || |||||||||||||||||||
Sbjct: 9619025 atgggcattccattaccagacatgtcctcagaacgaacgagcatgccattggggtagcat 9619084

                                          
Query: 701     agaaaggaatgactgtggagcagctct 727
               |||||||||| |  || ||||||||||
Sbjct: 9619085 agaaaggaataatcgtagagcagctct 9619111



 Score = 40.1 bits (20), Expect = 10.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 553     acaaagtagacatccaattcatca 576
               ||||| ||||||||||||||||||
Sbjct: 9618937 acaaaatagacatccaattcatca 9618960
to top
>gb|AC084405.6| Oryza sativa chromosome 3 BAC OSJNBa0044H10 genomic sequence, complete
             sequence
          Length = 165113

 Score = 77.8 bits (39), Expect = 5e-11
 Identities = 75/87 (86%)
 Strand = Plus / Plus

                                                                         
Query: 641   atggacattcaattaccaagcatgccctcagaacaaatgaacatgccattggggtagcat 700
             |||| ||||| |||||||  |||| ||||||||| || || |||||||||||||||||||
Sbjct: 39924 atgggcattccattaccagacatgtcctcagaacgaacgagcatgccattggggtagcat 39983

                                        
Query: 701   agaaaggaatgactgtggagcagctct 727
             |||||||||| |  || ||||||||||
Sbjct: 39984 agaaaggaataatcgtagagcagctct 40010



 Score = 40.1 bits (20), Expect = 10.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 553   acaaagtagacatccaattcatca 576
             ||||| ||||||||||||||||||
Sbjct: 39836 acaaaatagacatccaattcatca 39859
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 77.8 bits (39), Expect = 5e-11
 Identities = 75/87 (86%)
 Strand = Plus / Plus

                                                                           
Query: 641     atggacattcaattaccaagcatgccctcagaacaaatgaacatgccattggggtagcat 700
               |||| ||||| |||||||  |||| ||||||||| || || |||||||||||||||||||
Sbjct: 9617146 atgggcattccattaccagacatgtcctcagaacgaacgagcatgccattggggtagcat 9617205

                                          
Query: 701     agaaaggaatgactgtggagcagctct 727
               |||||||||| |  || ||||||||||
Sbjct: 9617206 agaaaggaataatcgtagagcagctct 9617232



 Score = 40.1 bits (20), Expect = 10.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 553     acaaagtagacatccaattcatca 576
               ||||| ||||||||||||||||||
Sbjct: 9617058 acaaaatagacatccaattcatca 9617081
to top
>dbj|AK067596.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013111G02, full
            insert sequence
          Length = 2449

 Score = 77.8 bits (39), Expect = 5e-11
 Identities = 75/87 (86%)
 Strand = Plus / Minus

                                                                        
Query: 641  atggacattcaattaccaagcatgccctcagaacaaatgaacatgccattggggtagcat 700
            |||| ||||| |||||||  |||| ||||||||| || || |||||||||||||||||||
Sbjct: 2322 atgggcattccattaccagacatgtcctcagaacgaacgagcatgccattggggtagcat 2263

                                       
Query: 701  agaaaggaatgactgtggagcagctct 727
            |||||||||| |  || ||||||||||
Sbjct: 2262 agaaaggaataatcgtagagcagctct 2236



 Score = 40.1 bits (20), Expect = 10.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 553  acaaagtagacatccaattcatca 576
            ||||| ||||||||||||||||||
Sbjct: 2410 acaaaatagacatccaattcatca 2387
to top
>emb|AL360015.25| Human DNA sequence from clone RP11-344F20 on chromosome 6 Contains a
             CGI-35 pseudogene, complete sequence
          Length = 153072

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 337   gtttgatctgataatacaatga 358
             ||||||||||||||||||||||
Sbjct: 84802 gtttgatctgataatacaatga 84823
to top
>gb|AC005079.6|AC005079 Homo sapiens BAC clone CTA-252P22 from 7, complete sequence
          Length = 415268

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 157    agtaaacataccctagcaacag 178
              ||||||||||||||||||||||
Sbjct: 379468 agtaaacataccctagcaacag 379447
to top
>emb|AL596203.6| Zebrafish DNA sequence from clone BUSM1-94E17 in linkage group 3,
             complete sequence
          Length = 104106

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 277   catttcttctggccacatgccacaggaaaa 306
             |||| ||||||||||||||||||| |||||
Sbjct: 68746 cattccttctggccacatgccacacgaaaa 68775
to top
>gb|AC117796.12| Mus musculus chromosome 1, clone RP24-554P6, complete sequence
          Length = 109851

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 705   aggaatgactgtggagcagctc 726
             ||||||||||||||||||||||
Sbjct: 80870 aggaatgactgtggagcagctc 80849
to top
>emb|CR376732.12| Zebrafish DNA sequence from clone DKEY-146H23 in linkage group 3,
             complete sequence
          Length = 171210

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 277   catttcttctggccacatgccacaggaaaa 306
             |||| ||||||||||||||||||| |||||
Sbjct: 70950 cattccttctggccacatgccacacgaaaa 70979
to top
>gb|AF016682.2| Caenorhabditis elegans cosmid T07D3, complete sequence
          Length = 33706

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 366   aatcacatgaaactcctcatttgtc 390
             |||||| ||||||||||||||||||
Sbjct: 26925 aatcacttgaaactcctcatttgtc 26949
to top
>gb|AC099741.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-92M3, complete
              sequence
          Length = 249636

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 63     catctgcagcctctaattcag 83
              |||||||||||||||||||||
Sbjct: 116050 catctgcagcctctaattcag 116070
to top
>gb|AC125177.4| Mus musculus BAC clone RP23-315H8 from chromosome 8, complete sequence
          Length = 217567

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 82    agcagcctgataaaattcacagaatttcc 110
             |||||||| |||||||| |||||||||||
Sbjct: 10808 agcagcctcataaaattaacagaatttcc 10836
to top
>emb|X56259.1|SCKRS1 S.cerevisiae strain 7305b mutant KRS1 gene for lysyl-tRNA synthetase
          Length = 2480

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 106  tttccaattcttcaatcatat 126
            |||||||||||||||||||||
Sbjct: 1520 tttccaattcttcaatcatat 1500
to top
>emb|CR391968.4| Human DNA sequence from clone WI2-921B19 on chromosome 9, complete
             sequence
          Length = 23767

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 129   caaacccttacatatacatat 149
             |||||||||||||||||||||
Sbjct: 10399 caaacccttacatatacatat 10379
to top
>gb|AC060788.11| Homo sapiens chromosome 8, clone CTD-2008O4, complete sequence
          Length = 177717

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 21    cacattatatattnaattatatgt 44
             ||||||||||||| ||||||||||
Sbjct: 89866 cacattatatatttaattatatgt 89843
to top
>ref|NM_061442.3| Caenorhabditis elegans T07D3.9a (T07D3.9) mRNA, complete cds
          Length = 1463

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 366 aatcacatgaaactcctcatttgtc 390
           |||||| ||||||||||||||||||
Sbjct: 777 aatcacttgaaactcctcatttgtc 753
to top
>ref|NM_182190.3| Caenorhabditis elegans T07D3.9b (T07D3.9) mRNA, complete cds
          Length = 1528

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 366 aatcacatgaaactcctcatttgtc 390
           |||||| ||||||||||||||||||
Sbjct: 775 aatcacttgaaactcctcatttgtc 751
to top
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 271      agataacatttcttctggcca 291
                |||||||||||||||||||||
Sbjct: 13950475 agataacatttcttctggcca 13950495
to top
>gb|AC154562.2| Mus musculus BAC clone RP23-400N5 from chromosome 14, complete sequence
          Length = 180365

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 279   tttcttctggccacatgccacagga 303
             ||||||||||||||| |||||||||
Sbjct: 54612 tttcttctggccacaagccacagga 54636
to top
>dbj|AP005688.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0031J07
          Length = 172511

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 271   agataacatttcttctggcca 291
             |||||||||||||||||||||
Sbjct: 67695 agataacatttcttctggcca 67715
to top
>gb|AC118721.9| Mus musculus chromosome 8, clone RP24-157I20, complete sequence
          Length = 161212

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 82     agcagcctgataaaattcacagaatttcc 110
              |||||||| |||||||| |||||||||||
Sbjct: 149841 agcagcctcataaaattaacagaatttcc 149869
to top
>dbj|AP003172.2| Homo sapiens genomic DNA, chromosome 11q clone:RP11-822D3, complete
            sequences
          Length = 33994

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 386  ttgtcactactggtatcctaa 406
            |||||||||||||||||||||
Sbjct: 8297 ttgtcactactggtatcctaa 8317
to top
>emb|AL929212.8| Mouse DNA sequence from clone RP23-65G6 on chromosome 2, complete
             sequence
          Length = 255261

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 649   tcaattaccaagcatgccctcagaa 673
             ||||||||| |||||||||||||||
Sbjct: 38529 tcaattacccagcatgccctcagaa 38553
to top
>ref|NM_115520.2| Arabidopsis thaliana unknown protein AT3G56610 mRNA, complete cds
          Length = 448

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 56  acattggcatctgcagcctc 75
           ||||||||||||||||||||
Sbjct: 82  acattggcatctgcagcctc 101
to top
>gb|BC070852.1| Xenopus laevis hypothetical protein MGC84592, mRNA (cDNA clone
            MGC:84592 IMAGE:6640288), complete cds
          Length = 5962

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 571  tcatcacatagttgtacaacacaa 594
            ||||| ||||||||||||||||||
Sbjct: 2485 tcatcccatagttgtacaacacaa 2462
to top
>gb|AY488284.1| Melidectes ochromelas NADH dehydrogenase subunit 2 (ND2) gene,
           partial cds; mitochondrial
          Length = 1040

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 360 acaactaatcacatgaaact 379
           ||||||||||||||||||||
Sbjct: 922 acaactaatcacatgaaact 941
to top
>gb|AY488283.1| Melidectes belfordi NADH dehydrogenase subunit 2 (ND2) gene,
           partial cds; mitochondrial
          Length = 1040

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 360 acaactaatcacatgaaact 379
           ||||||||||||||||||||
Sbjct: 922 acaactaatcacatgaaact 941
to top
>gb|AF228660.5| Homo sapiens chromosome 8 clone RP11-37N22 map q24.13, complete sequence
          Length = 182016

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 164    ataccctagcaacagcagca 183
              ||||||||||||||||||||
Sbjct: 166796 ataccctagcaacagcagca 166815
to top
>gb|BT012368.1| Arabidopsis thaliana At3g56610 mRNA, complete cds
          Length = 387

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 56 acattggcatctgcagcctc 75
          ||||||||||||||||||||
Sbjct: 70 acattggcatctgcagcctc 89
to top
>gb|BT012204.1| Arabidopsis thaliana At3g56610 mRNA, complete cds
          Length = 498

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 56  acattggcatctgcagcctc 75
           ||||||||||||||||||||
Sbjct: 81  acattggcatctgcagcctc 100
to top
>gb|AC007027.3| Homo sapiens PAC clone RP5-832O14 from 7, complete sequence
          Length = 112066

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 303    aaaattcttgattcataaagaaaa 326
              ||||||||||||| ||||||||||
Sbjct: 106549 aaaattcttgatttataaagaaaa 106572
to top
>emb|BX062819.1|CNS09KMV Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 5-PRIME end of
           clone FK0AAC44BB10 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 997

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 205 gctttgttcttgcttactgc 224
           ||||||||||||||||||||
Sbjct: 612 gctttgttcttgcttactgc 631
to top
>emb|BX061934.1|CNS09JYA Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 5-PRIME end of
           clone FK0AAC42DH06 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 165

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 205 gctttgttcttgcttactgc 224
           ||||||||||||||||||||
Sbjct: 95  gctttgttcttgcttactgc 114
to top
>emb|AL163972.1|ATT5P19 Arabidopsis thaliana DNA chromosome 3, BAC clone T5P19
          Length = 101539

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 56    acattggcatctgcagcctc 75
             ||||||||||||||||||||
Sbjct: 82797 acattggcatctgcagcctc 82778
to top
>emb|BX548058.9| Zebrafish DNA sequence from clone CH211-181H11 in linkage group 18,
             complete sequence
          Length = 95339

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 345   tgataatacaatgaaacaactaat 368
             |||||||||||| |||||||||||
Sbjct: 24002 tgataatacaattaaacaactaat 24025
to top
>gb|AF243495.2| Homo sapiens hepatocellular carcinoma-associated antigen 67 (HCA67)
            mRNA, complete cds
          Length = 6722

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 278  atttcttctggccacatgccacaggaaa 305
            |||||||||||| | |||||||||||||
Sbjct: 4319 atttcttctggctagatgccacaggaaa 4292
to top
>gb|AC090921.7| Homo sapiens chromosome 8, clone RP11-37N22, complete sequence
          Length = 182041

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 164   ataccctagcaacagcagca 183
             ||||||||||||||||||||
Sbjct: 15222 ataccctagcaacagcagca 15203
to top
>gb|AC093863.3| Homo sapiens BAC clone RP11-552I10 from 4, complete sequence
          Length = 164278

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 360    acaactaatcacatgaaact 379
              ||||||||||||||||||||
Sbjct: 115933 acaactaatcacatgaaact 115952
to top
>gb|AC113015.12| Mus musculus chromosome 1, clone RP23-180E19, complete sequence
          Length = 188389

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 312   gattcataaagaaaacaact 331
             ||||||||||||||||||||
Sbjct: 50702 gattcataaagaaaacaact 50683
to top
>ref|NM_015310.2| Homo sapiens pleckstrin and Sec7 domain containing 3 (PSD3),
            transcript variant 1, mRNA
          Length = 8436

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 278  atttcttctggccacatgccacaggaaa 305
            |||||||||||| | |||||||||||||
Sbjct: 5906 atttcttctggctagatgccacaggaaa 5879
to top
>ref|NM_206909.1| Homo sapiens pleckstrin and Sec7 domain containing 3 (PSD3),
            transcript variant 2, mRNA
          Length = 6822

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 278  atttcttctggccacatgccacaggaaa 305
            |||||||||||| | |||||||||||||
Sbjct: 4292 atttcttctggctagatgccacaggaaa 4265
to top
>gb|AC158534.2| Mus musculus BAC clone RP23-32O6 from chromosome 7, complete sequence
          Length = 242359

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 163   cataccctagcaacagcagc 182
             ||||||||||||||||||||
Sbjct: 37142 cataccctagcaacagcagc 37161
to top
>gb|AC131791.4| Mus musculus BAC clone RP24-462N24 from chromosome 7, complete sequence
          Length = 178072

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 163   cataccctagcaacagcagc 182
             ||||||||||||||||||||
Sbjct: 53782 cataccctagcaacagcagc 53801
to top
>gb|AC154014.4| Mus musculus 6 BAC RP24-409C18 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 161963

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 603    ccctccatgtccttcctgat 622
              ||||||||||||||||||||
Sbjct: 136214 ccctccatgtccttcctgat 136233
to top
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 373     tgaaactcctcatttgtcac 392
               ||||||||||||||||||||
Sbjct: 2867444 tgaaactcctcatttgtcac 2867425
to top
>gb|AC090497.2|AC090497 Homo sapiens chromosome 7 clone RP11-643E1, complete sequence
          Length = 169199

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 312    gattcataaagaaaacaact 331
              ||||||||||||||||||||
Sbjct: 147420 gattcataaagaaaacaact 147401
to top
>gb|AC120051.5| Homo sapiens chromosome 8, clone RP11-809L8, complete sequence
          Length = 200827

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 278   atttcttctggccacatgccacaggaaa 305
             |||||||||||| | |||||||||||||
Sbjct: 15213 atttcttctggctagatgccacaggaaa 15186
to top
>gb|AC154017.7| Mus musculus 6 BAC RP24-156H18 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 193116

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 603    ccctccatgtccttcctgat 622
              ||||||||||||||||||||
Sbjct: 137144 ccctccatgtccttcctgat 137125
to top
>gb|AC133794.2| Homo sapiens 12 BAC RP11-193M21 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 89995

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 22    acattatatattnaattatatgt 44
             |||||||||||| ||||||||||
Sbjct: 76843 acattatatattaaattatatgt 76865
to top
>gb|AC083862.2|AC083862 Homo sapiens chromosome 7 clone RP11-134L10, complete sequence
          Length = 162931

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 312   gattcataaagaaaacaact 331
             ||||||||||||||||||||
Sbjct: 85354 gattcataaagaaaacaact 85335
to top
>gb|AC012665.8| Homo sapiens BAC clone RP11-19E11 from 2, complete sequence
          Length = 126039

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 674   caaatgaacatgccattggg 693
             ||||||||||||||||||||
Sbjct: 42181 caaatgaacatgccattggg 42200
to top
>gb|AC109183.17| Mus musculus chromosome 15, clone RP24-86P1, complete sequence
          Length = 182733

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 63     catctgcagcctctaattcagcag 86
              ||||| ||||||||||||||||||
Sbjct: 153655 catcttcagcctctaattcagcag 153678
to top
>dbj|AP005745.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OSJNBa0017O03
          Length = 180651

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 373   tgaaactcctcatttgtcac 392
             ||||||||||||||||||||
Sbjct: 58436 tgaaactcctcatttgtcac 58417
to top
>emb|BX647406.1|HSM807551 Homo sapiens mRNA; cDNA DKFZp686E1349 (from clone DKFZp686E1349)
          Length = 6346

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 278  atttcttctggccacatgccacaggaaa 305
            |||||||||||| | |||||||||||||
Sbjct: 3960 atttcttctggctagatgccacaggaaa 3933
to top
>emb|AL391833.10| Human DNA sequence from clone RP11-307K1 on chromosome 6, complete
              sequence
          Length = 201512

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 606    tccatgtccttcctgatgag 625
              ||||||||||||||||||||
Sbjct: 157089 tccatgtccttcctgatgag 157108
to top
>emb|BX548060.7| Zebrafish DNA sequence from clone CH211-117I10 in linkage group 18,
             complete sequence
          Length = 120346

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 345   tgataatacaatgaaacaactaat 368
             |||||||||||| |||||||||||
Sbjct: 48752 tgataatacaattaaacaactaat 48729
to top
>emb|BX088545.7| Zebrafish DNA sequence from clone DKEY-60G19 in linkage group 17,
             complete sequence
          Length = 156881

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 72    cctctaattcagcagcctga 91
             ||||||||||||||||||||
Sbjct: 24451 cctctaattcagcagcctga 24432
to top
>emb|CR384057.25| Zebrafish DNA sequence from clone CH211-243K10 in linkage group 17,
             complete sequence
          Length = 154493

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 72    cctctaattcagcagcctga 91
             ||||||||||||||||||||
Sbjct: 83243 cctctaattcagcagcctga 83262
to top
>dbj|AP008242.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT22D23, TM0409,
             complete sequence
          Length = 93754

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 292   catgccacaggaaaattctt 311
             ||||||||||||||||||||
Sbjct: 56877 catgccacaggaaaattctt 56896
to top
>emb|AL954178.8| Mouse DNA sequence from clone RP23-21J10 on chromosome X, complete
             sequence
          Length = 103135

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 639   aaatggacattcaattacca 658
             ||||||||||||||||||||
Sbjct: 45457 aaatggacattcaattacca 45476
to top
>emb|AL844199.8| Mouse DNA sequence from clone RP23-39F22 on chromosome 4, complete
             sequence
          Length = 205589

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 206   ctttgttcttgcttactgct 225
             ||||||||||||||||||||
Sbjct: 15628 ctttgttcttgcttactgct 15647
to top
>dbj|AP000888.3| Homo sapiens genomic DNA, chromosome 6q25.2, clone:KB1880F11
          Length = 166355

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 606   tccatgtccttcctgatgag 625
             ||||||||||||||||||||
Sbjct: 79299 tccatgtccttcctgatgag 79318
to top
>dbj|AB023159.2| Homo sapiens mRNA for KIAA0942 protein, partial cds
          Length = 6670

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 278  atttcttctggccacatgccacaggaaa 305
            |||||||||||| | |||||||||||||
Sbjct: 4294 atttcttctggctagatgccacaggaaa 4267


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7,589,384
Number of Sequences: 3902068
Number of extensions: 7589384
Number of successful extensions: 152188
Number of sequences better than 10.0: 64
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 151889
Number of HSP's gapped (non-prelim): 299
length of query: 727
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 704
effective length of database: 17,143,297,704
effective search space: 12068881583616
effective search space used: 12068881583616
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top