ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbags35n09 |
|---|---|
| Clone Library Name | barley_pub |
>CSN1_ARATH (P45432) COP9 signalosome complex subunit 1 (CSN complex subunit 1)| (Constitutive photomorphogenesis protein 11) (FUSCA protein 6) (FUSCA6) Length = 441 Score = 250 bits (638), Expect = 3e-66 Identities = 122/154 (79%), Positives = 138/154 (89%) Frame = -1 Query: 672 IDNYNFRNFLELVPEVRELVNDFYASRYGSCLGYLEKLKSNLLLDMHLHEHIETLYKDIR 493 IDN NFRNFLELVP+VREL+NDFY+SRY SCL YL LKSNLLLD+HLH+H++TLY IR Sbjct: 280 IDNINFRNFLELVPDVRELINDFYSSRYASCLEYLASLKSNLLLDIHLHDHVDTLYDQIR 339 Query: 492 HKAIIQYTFPFISVDLNLMAVAFQTSVSLLEKELAALITDNKIQARIDSHNKILYASHAD 313 KA+IQYT PF+SVDL+ MA AF+TSVS LEKEL ALITDN+IQARIDSHNKILYA HAD Sbjct: 340 KKALIQYTLPFVSVDLSRMADAFKTSVSGLEKELEALITDNQIQARIDSHNKILYARHAD 399 Query: 312 QRNATFQRALQTGNEFERDVKSMLLRANLLKHEY 211 QRNATFQ+ LQ GNEF+RDV++MLLRANLLKHEY Sbjct: 400 QRNATFQKVLQMGNEFDRDVRAMLLRANLLKHEY 433
>CSN1_XENLA (Q6NRT5) COP9 signalosome complex subunit 1 (Signalosome subunit 1)| Length = 487 Score = 166 bits (419), Expect = 8e-41 Identities = 80/153 (52%), Positives = 113/153 (73%) Frame = -1 Query: 672 IDNYNFRNFLELVPEVRELVNDFYASRYGSCLGYLEKLKSNLLLDMHLHEHIETLYKDIR 493 I + +F+ FLEL P+VR+++ FY S+Y SCL L+++K NLLLDM+L H+ TLY IR Sbjct: 307 ISSSSFKLFLELEPQVRDIIFKFYESKYASCLKMLDEIKDNLLLDMYLAPHVRTLYTQIR 366 Query: 492 HKAIIQYTFPFISVDLNLMAVAFQTSVSLLEKELAALITDNKIQARIDSHNKILYASHAD 313 ++A+IQY P++S D+ MA AF T+VS LE EL LI + I ARIDSH+KILYA D Sbjct: 367 NRALIQYFSPYVSADMYKMATAFNTTVSALEDELTQLILEGLINARIDSHSKILYARDVD 426 Query: 312 QRNATFQRALQTGNEFERDVKSMLLRANLLKHE 214 QR+ TF+++LQ G EF+R K+M+LRA +L+++ Sbjct: 427 QRSTTFEKSLQMGREFQRRAKAMILRAAVLRNQ 459
>CSN1_MOUSE (Q99LD4) COP9 signalosome complex subunit 1 (Signalosome subunit 1)| (SGN1) (JAB1-containing signalosome subunit 1) (G protein pathway suppressor 1) (GPS1 protein) Length = 471 Score = 163 bits (412), Expect = 5e-40 Identities = 78/153 (50%), Positives = 113/153 (73%) Frame = -1 Query: 672 IDNYNFRNFLELVPEVRELVNDFYASRYGSCLGYLEKLKSNLLLDMHLHEHIETLYKDIR 493 I + +F+ FLEL P+VR+++ FY S+Y SCL L+++K NLLLDM+L H+ TLY IR Sbjct: 291 ISSSSFKLFLELEPQVRDIIFKFYESKYASCLKMLDEMKDNLLLDMYLAPHVRTLYTQIR 350 Query: 492 HKAIIQYTFPFISVDLNLMAVAFQTSVSLLEKELAALITDNKIQARIDSHNKILYASHAD 313 ++A+IQY P++S D++ MA AF T+V+ LE EL LI + I ARIDSH+KILYA D Sbjct: 351 NRALIQYFSPYVSADMHKMAAAFNTTVAALEDELTQLILEGLINARIDSHSKILYARDVD 410 Query: 312 QRNATFQRALQTGNEFERDVKSMLLRANLLKHE 214 QR+ TF+++L G EF+R K+M+LRA +L+++ Sbjct: 411 QRSTTFEKSLLMGKEFQRRAKAMILRAAVLRNQ 443
>CSN1_HUMAN (Q13098) COP9 signalosome complex subunit 1 (Signalosome subunit 1)| (SGN1) (JAB1-containing signalosome subunit 1) (G protein pathway suppressor 1) (GPS1 protein) (MFH protein) Length = 471 Score = 162 bits (411), Expect = 7e-40 Identities = 77/153 (50%), Positives = 113/153 (73%) Frame = -1 Query: 672 IDNYNFRNFLELVPEVRELVNDFYASRYGSCLGYLEKLKSNLLLDMHLHEHIETLYKDIR 493 I + +F+ FLEL P+VR+++ FY S+Y SCL L+++K NLLLDM+L H+ TLY IR Sbjct: 291 ISSSSFKLFLELEPQVRDIIFKFYESKYASCLKMLDEMKDNLLLDMYLAPHVRTLYTQIR 350 Query: 492 HKAIIQYTFPFISVDLNLMAVAFQTSVSLLEKELAALITDNKIQARIDSHNKILYASHAD 313 ++A+IQY P++S D++ MA AF T+V+ LE EL LI + I AR+DSH+KILYA D Sbjct: 351 NRALIQYFSPYVSADMHRMAAAFNTTVAALEDELTQLILEGLISARVDSHSKILYARDVD 410 Query: 312 QRNATFQRALQTGNEFERDVKSMLLRANLLKHE 214 QR+ TF+++L G EF+R K+M+LRA +L+++ Sbjct: 411 QRSTTFEKSLLMGKEFQRRAKAMMLRAAVLRNQ 443
>CSN1_RAT (P97834) COP9 signalosome complex subunit 1 (Signalosome subunit 1)| (SGN1) (JAB1-containing signalosome subunit 1) (G protein pathway suppressor 1) (MFH protein) Length = 471 Score = 162 bits (409), Expect = 1e-39 Identities = 77/153 (50%), Positives = 113/153 (73%) Frame = -1 Query: 672 IDNYNFRNFLELVPEVRELVNDFYASRYGSCLGYLEKLKSNLLLDMHLHEHIETLYKDIR 493 I + +F+ FLEL P+VR+++ FY S+Y SCL L+++K NLLLDM+L H+ TLY IR Sbjct: 291 ISSSSFKLFLELEPQVRDIIFKFYESKYASCLKMLDEMKDNLLLDMYLAPHVRTLYTQIR 350 Query: 492 HKAIIQYTFPFISVDLNLMAVAFQTSVSLLEKELAALITDNKIQARIDSHNKILYASHAD 313 ++A+IQY P++S D++ MA AF T+V+ LE EL +I + I ARIDSH+KILYA D Sbjct: 351 NRALIQYFSPYVSADMHKMAAAFNTTVAALEDELTQVILEGLINARIDSHSKILYARDVD 410 Query: 312 QRNATFQRALQTGNEFERDVKSMLLRANLLKHE 214 QR+ TF+++L G EF+R K+M+LRA +L+++ Sbjct: 411 QRSTTFEKSLLMGKEFQRRAKAMILRAAVLRNQ 443
>CSN1_DROME (Q9VVU5) COP9 signalosome complex subunit 1b (Signalosome subunit| 1b) (Dch1-2) Length = 525 Score = 160 bits (405), Expect = 3e-39 Identities = 76/151 (50%), Positives = 114/151 (75%) Frame = -1 Query: 672 IDNYNFRNFLELVPEVRELVNDFYASRYGSCLGYLEKLKSNLLLDMHLHEHIETLYKDIR 493 I + +F+ FLEL P++R+++ FY S+Y SCL L++++ NLL+DM++ H+ TLY IR Sbjct: 340 IASTSFKLFLELEPQLRDIIFKFYESKYASCLTLLDEIRDNLLVDMYIAPHVTTLYTKIR 399 Query: 492 HKAIIQYTFPFISVDLNLMAVAFQTSVSLLEKELAALITDNKIQARIDSHNKILYASHAD 313 ++A+IQY P++S D++ MA+AF +SV LE E+ LI D +IQARIDSHNKIL+A AD Sbjct: 400 NRALIQYFSPYMSADMHKMAMAFNSSVGDLENEVMQLILDGQIQARIDSHNKILFAKEAD 459 Query: 312 QRNATFQRALQTGNEFERDVKSMLLRANLLK 220 QRN+TF+RAL G +++R + ++LRA +LK Sbjct: 460 QRNSTFERALIMGKQYQRHTRMLVLRAAMLK 490
>CSN1_CAEEL (Q9GS00) COP9 signalosome complex subunit 1 (Signalosome subunit 1)| Length = 601 Score = 77.8 bits (190), Expect = 3e-14 Identities = 43/147 (29%), Positives = 74/147 (50%) Frame = -1 Query: 666 NYNFRNFLELVPEVRELVNDFYASRYGSCLGYLEKLKSNLLLDMHLHEHIETLYKDIRHK 487 N FR LE P++ EL+ + +SR+G C + +K LLLD + +++ L++ IR K Sbjct: 382 NGTFRKLLESEPQLIELLGSYTSSRFGRCFEIMRSVKPRLLLDPFISRNVDELFEKIRQK 441 Query: 486 AIIQYTFPFISVDLNLMAVAFQTSVSLLEKELAALITDNKIQARIDSHNKILYASHADQR 307 ++QY P+ ++ + MA A S + L+ L LI + +ID + I+ Sbjct: 442 CVLQYLQPYSTIKMATMAEAVGMSSAELQLSLLELIEQKHVSLKIDQNEGIVRILDERDE 501 Query: 306 NATFQRALQTGNEFERDVKSMLLRANL 226 NA +R T + + KS+L + L Sbjct: 502 NAILKRVNVTCDRATQKAKSLLWKTTL 528
>PSD6_CAEEL (Q20585) 26S proteasome non-ATPase regulatory subunit 6 (26S| proteasome regulatory subunit rpn-7) Length = 410 Score = 64.7 bits (156), Expect = 2e-10 Identities = 36/124 (29%), Positives = 66/124 (53%), Gaps = 1/124 (0%) Frame = -1 Query: 639 LVPEVRELVNDFYASRYGSCLGYLEKLKSNLL-LDMHLHEHIETLYKDIRHKAIIQYTFP 463 L+P VRE + +Y Y L L+S D +L H + +RH+A Q+ P Sbjct: 273 LIP-VREYLESYYDCHYDRFFIQLAALESERFKFDRYLSPHFNYYSRGMRHRAYEQFLTP 331 Query: 462 FISVDLNLMAVAFQTSVSLLEKELAALITDNKIQARIDSHNKILYASHADQRNATFQRAL 283 + +V +++MA F S + +++EL LI ++Q RID+ N ++ +H D +N ++ + Sbjct: 332 YKTVRIDMMAKDFGVSRAFIDRELHRLIATGQLQCRIDAVNGVIEVNHRDSKNHLYKAVI 391 Query: 282 QTGN 271 + G+ Sbjct: 392 KDGD 395
>CSN1_BRAOL (P68352) COP9 signalosome complex subunit 1 (CSN complex subunit 1)| (Constitutive photomorphogenesis protein 11) (FUSCA protein 6) (FUSCA6) (Fragment) Length = 37 Score = 63.9 bits (154), Expect = 4e-10 Identities = 30/34 (88%), Positives = 32/34 (94%) Frame = -1 Query: 390 AALITDNKIQARIDSHNKILYASHADQRNATFQR 289 A LITDN+IQARIDSHNKILYA HADQRNATFQ+ Sbjct: 4 ALLITDNQIQARIDSHNKILYARHADQRNATFQK 37
>PSD6_ORYSA (Q8W425) 26S proteasome non-ATPase regulatory subunit 6 (26S| proteasome regulatory particle non-ATPase subunit 7) (OsRPN7) Length = 389 Score = 62.8 bits (151), Expect = 9e-10 Identities = 34/122 (27%), Positives = 57/122 (46%) Frame = -1 Query: 636 VPEVRELVNDFYASRYGSCLGYLEKLKSNLLLDMHLHEHIETLYKDIRHKAIIQYTFPFI 457 VP + E +N Y +Y S L + LD +L H +++R Q+ + Sbjct: 253 VPHLSEFLNSLYNCQYKSFFAAFSGLTEQIKLDRYLQPHFRYYMREVRTVVYSQFLESYK 312 Query: 456 SVDLNLMAVAFQTSVSLLEKELAALITDNKIQARIDSHNKILYASHADQRNATFQRALQT 277 SV + MA AF +V ++ EL+ I K+ +ID +L + D RNA +Q ++ Sbjct: 313 SVTMEAMASAFGVTVDFIDLELSRFIAAGKLHCKIDKVACVLETNRPDARNAFYQATIKQ 372 Query: 276 GN 271 G+ Sbjct: 373 GD 374
>PSD6_ARATH (Q93Y35) Probable 26S proteasome non-ATPase regulatory subunit 6| Length = 387 Score = 59.3 bits (142), Expect = 1e-08 Identities = 32/134 (23%), Positives = 61/134 (45%) Frame = -1 Query: 672 IDNYNFRNFLELVPEVRELVNDFYASRYGSCLGYLEKLKSNLLLDMHLHEHIETLYKDIR 493 +D L +P + E +N Y +Y + + + D +L+ H +++R Sbjct: 239 VDAPEILTVLGKIPFLSEFLNSLYECQYKAFFSAFAGMAVQIKYDRYLYPHFRFYMREVR 298 Query: 492 HKAIIQYTFPFISVDLNLMAVAFQTSVSLLEKELAALITDNKIQARIDSHNKILYASHAD 313 Q+ + SV + MA AF SV +++EL+ I K+ +ID +L + D Sbjct: 299 TVVYSQFLESYKSVTVEAMAKAFGVSVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPD 358 Query: 312 QRNATFQRALQTGN 271 +NA +Q ++ G+ Sbjct: 359 AKNALYQATIKQGD 372
>PSD6_DROME (Q9V3G7) 26S proteasome non-ATPase regulatory subunit 6 (26S| proteasome regulatory subunit S10) (Rpn7 protein) Length = 389 Score = 55.8 bits (133), Expect = 1e-07 Identities = 31/134 (23%), Positives = 64/134 (47%) Frame = -1 Query: 672 IDNYNFRNFLELVPEVRELVNDFYASRYGSCLGYLEKLKSNLLLDMHLHEHIETLYKDIR 493 I + L +P+V++ + Y +Y + +L ++ L LD +H H +++R Sbjct: 241 IKGSEIQEVLHGLPDVKQFLFSLYNCQYENFYVHLAGVEKQLRLDYLIHPHYRYYVREMR 300 Query: 492 HKAIIQYTFPFISVDLNLMAVAFQTSVSLLEKELAALITDNKIQARIDSHNKILYASHAD 313 Q + S+ L MA +F +V +++ELA I ++ A++D I+ + D Sbjct: 301 ILGYTQLLESYRSLTLQYMAESFGVTVEYIDQELARFIAAGRLHAKVDRVGGIVETNRPD 360 Query: 312 QRNATFQRALQTGN 271 +N +Q ++ G+ Sbjct: 361 NKNWQYQATIKQGD 374
>CSN1_SCHPO (O94308) COP9 signalosome complex subunit 1 (CSN complex subunit 1)| (SGN1) Length = 422 Score = 54.3 bits (129), Expect = 3e-07 Identities = 29/113 (25%), Positives = 55/113 (48%) Frame = -1 Query: 666 NYNFRNFLELVPEVRELVNDFYASRYGSCLGYLEKLKSNLLLDMHLHEHIETLYKDIRHK 487 N F +L P +R + +Y L L++ + LDM+L + L+ IR + Sbjct: 251 NEEFNALSDLDPSLRRCLQAKCNRKYSLLLDTLQQNAQDYSLDMYLAPQLTNLFSLIRER 310 Query: 486 AIIQYTFPFISVDLNLMAVAFQTSVSLLEKELAALITDNKIQARIDSHNKILY 328 +++ Y P+ ++ + +AV F + +EK L +I K+ ++DS K +Y Sbjct: 311 SLLDYLIPYSALPFSKIAVDFHIDENFIEKNLLEIIEAKKLNGKVDSLQKRVY 363
>CSN2_DROME (Q94899) COP9 signalosome complex subunit 2 (Signalosome subunit 2)| (Dch2) (Alien protein) Length = 444 Score = 52.0 bits (123), Expect = 2e-06 Identities = 29/119 (24%), Positives = 59/119 (49%) Frame = -1 Query: 618 LVNDFYASRYGSCLGYLEKLKSNLLLDMHLHEHIETLYKDIRHKAIIQYTFPFISVDLNL 439 LVN + + L + +SN++ D + EHIE L ++IR + +I+ P+ ++ + Sbjct: 315 LVNSYQNNDINEFETILRQHRSNIMADQFIREHIEDLLRNIRTQVLIKLIRPYKNIAIPF 374 Query: 438 MAVAFQTSVSLLEKELAALITDNKIQARIDSHNKILYASHADQRNATFQRALQTGNEFE 262 +A A + +E L + I D+ I+ RID N++L + + + + N+ + Sbjct: 375 IANALNIEPAEVESLLVSCILDDTIKGRIDQVNQVLQLDKINSSASRYNALEKWSNQIQ 433
>CSN2_XENLA (Q6IR75) COP9 signalosome complex subunit 2 (Signalosome subunit 2)| (Fragment) Length = 441 Score = 50.8 bits (120), Expect = 4e-06 Identities = 32/116 (27%), Positives = 56/116 (48%), Gaps = 3/116 (2%) Frame = -1 Query: 633 PEVRELVNDFYASRYGSCLGYLEKLK---SNLLLDMHLHEHIETLYKDIRHKAIIQYTFP 463 PE+ + N A + + + LK SN++ D + EHIE L ++IR + +I+ P Sbjct: 304 PEILAMTNLVSAYQNNDITEFEKILKTNHSNIMDDPFIREHIEELLRNIRTQVLIKLIKP 363 Query: 462 FISVDLNLMAVAFQTSVSLLEKELAALITDNKIQARIDSHNKILYASHADQRNATF 295 + + + ++ V+ +E L I DN I RID N++L H + A + Sbjct: 364 YTRIHIPFISKELNIDVADVESLLVQCILDNTIHGRIDQVNQLLELDHQKRGGARY 419
>CSN2_RAT (P61203) COP9 signalosome complex subunit 2 (Signalosome subunit 2)| (SGN2) (JAB1-containing signalosome subunit 2) (Thyroid receptor-interacting protein 15) (Alien homolog) Length = 443 Score = 50.8 bits (120), Expect = 4e-06 Identities = 32/116 (27%), Positives = 56/116 (48%), Gaps = 3/116 (2%) Frame = -1 Query: 633 PEVRELVNDFYASRYGSCLGYLEKLK---SNLLLDMHLHEHIETLYKDIRHKAIIQYTFP 463 PE+ + N A + + + LK SN++ D + EHIE L ++IR + +I+ P Sbjct: 306 PEILAMTNLVSAYQNNDITEFEKILKTNHSNIMDDPFIREHIEELLRNIRTQVLIKLIKP 365 Query: 462 FISVDLNLMAVAFQTSVSLLEKELAALITDNKIQARIDSHNKILYASHADQRNATF 295 + + + ++ V+ +E L I DN I RID N++L H + A + Sbjct: 366 YTRIHIPFISKELNIDVADVESLLVQCILDNTIHGRIDQVNQLLELDHQKRGGARY 421
>CSN2_MOUSE (P61202) COP9 signalosome complex subunit 2 (Signalosome subunit 2)| (SGN2) (JAB1-containing signalosome subunit 2) (Thyroid receptor-interacting protein 15) (Alien homolog) Length = 443 Score = 50.8 bits (120), Expect = 4e-06 Identities = 32/116 (27%), Positives = 56/116 (48%), Gaps = 3/116 (2%) Frame = -1 Query: 633 PEVRELVNDFYASRYGSCLGYLEKLK---SNLLLDMHLHEHIETLYKDIRHKAIIQYTFP 463 PE+ + N A + + + LK SN++ D + EHIE L ++IR + +I+ P Sbjct: 306 PEILAMTNLVSAYQNNDITEFEKILKTNHSNIMDDPFIREHIEELLRNIRTQVLIKLIKP 365 Query: 462 FISVDLNLMAVAFQTSVSLLEKELAALITDNKIQARIDSHNKILYASHADQRNATF 295 + + + ++ V+ +E L I DN I RID N++L H + A + Sbjct: 366 YTRIHIPFISKELNIDVADVESLLVQCILDNTIHGRIDQVNQLLELDHQKRGGARY 421
>CSN2_HUMAN (P61201) COP9 signalosome complex subunit 2 (Signalosome subunit 2)| (SGN2) (JAB1-containing signalosome subunit 2) (Thyroid receptor-interacting protein 15) (Alien homolog) Length = 443 Score = 50.8 bits (120), Expect = 4e-06 Identities = 32/116 (27%), Positives = 56/116 (48%), Gaps = 3/116 (2%) Frame = -1 Query: 633 PEVRELVNDFYASRYGSCLGYLEKLK---SNLLLDMHLHEHIETLYKDIRHKAIIQYTFP 463 PE+ + N A + + + LK SN++ D + EHIE L ++IR + +I+ P Sbjct: 306 PEILAMTNLVSAYQNNDITEFEKILKTNHSNIMDDPFIREHIEELLRNIRTQVLIKLIKP 365 Query: 462 FISVDLNLMAVAFQTSVSLLEKELAALITDNKIQARIDSHNKILYASHADQRNATF 295 + + + ++ V+ +E L I DN I RID N++L H + A + Sbjct: 366 YTRIHIPFISKELNIDVADVESLLVQCILDNTIHGRIDQVNQLLELDHQKRGGARY 421
>CSN2_BRARE (Q6IQT4) COP9 signalosome complex subunit 2 (Signalosome subunit 2)| Length = 443 Score = 50.8 bits (120), Expect = 4e-06 Identities = 32/116 (27%), Positives = 56/116 (48%), Gaps = 3/116 (2%) Frame = -1 Query: 633 PEVRELVNDFYASRYGSCLGYLEKLK---SNLLLDMHLHEHIETLYKDIRHKAIIQYTFP 463 PE+ + N A + + + LK SN++ D + EHIE L ++IR + +I+ P Sbjct: 306 PEILAMTNLVSAYQNNDITEFEKILKTNHSNIMDDPFIREHIEELLRNIRTQVLIKLIKP 365 Query: 462 FISVDLNLMAVAFQTSVSLLEKELAALITDNKIQARIDSHNKILYASHADQRNATF 295 + + + ++ V+ +E L I DN I RID N++L H + A + Sbjct: 366 YTRIHIPFISKELNIDVADVESLLVQCILDNTINGRIDQVNQLLELDHQKRGGARY 421
>C71AF_ARATH (P58046) Cytochrome P450 71A15 (EC 1.14.-.-)| Length = 496 Score = 33.5 bits (75), Expect = 0.60 Identities = 36/154 (23%), Positives = 63/154 (40%), Gaps = 31/154 (20%) Frame = -1 Query: 651 NFLELVPEVRELVNDFYASRYGSCLGYLEKLKS------------NLLLDMHLHEHIETL 508 +F V ++ ELV F S Y CL ++++++ L+D + EH++ Sbjct: 200 DFKNQVRKITELVGGFPVSEYIPCLAWIDQIRGLYNRAEEVSKIFGDLMDKVVQEHLDAT 259 Query: 507 YKDIRHKAIIQYTFPFISVD-------------LNLMAVAFQTSVSLLEKELAALITD-- 373 K + I +F S D L++ T+ SLLE + LI Sbjct: 260 NKPTKDFVDILLSFERQSKDGIEVRRSDIKFIILDIFLGGTTTTNSLLEWTMTELIRHPE 319 Query: 372 --NKIQARI--DSHNKILYASHADQRNATFQRAL 283 K+Q I D+ N +Y SH + + + +A+ Sbjct: 320 CMKKLQDEIRGDATNLTIYRSHEEVEDMKYLKAV 353
>Y1311_METJA (Q58707) Hypothetical protein MJ1311| Length = 293 Score = 32.7 bits (73), Expect = 1.0 Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 13/112 (11%) Frame = -1 Query: 660 NFRNFLELVPE-VRELVNDF------------YASRYGSCLGYLEKLKSNLLLDMHLHEH 520 NFR L + PE + E+V D +A+ G+ ++EKL++ + +H+H H Sbjct: 163 NFRGVLGITPESLLEIVKDIDSKNLGITFDIGHANTAGNPAEFVEKLQNIGIGIIHVHAH 222 Query: 519 IETLYKDIRHKAIIQYTFPFISVDLNLMAVAFQTSVSLLEKELAALITDNKI 364 Y D H I + FI V L + + +S+ K + + +I Sbjct: 223 DNNGYDD-EHLKIGEGNINFIEVLEKLKEIGYDGVISIENKNIRDAVKSKEI 273
>RPOA_DEHE1 (Q3Z953) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 330 Score = 32.0 bits (71), Expect = 1.7 Identities = 14/49 (28%), Positives = 27/49 (55%) Frame = -1 Query: 435 AVAFQTSVSLLEKELAALITDNKIQARIDSHNKILYASHADQRNATFQR 289 A A S +L K+ AAL++ NK+ A +++ + YA ++ N ++ Sbjct: 204 ATAVSRSADILVKQFAALVSHNKVVAEVEASEPVKYAIPEEKYNMPIEQ 252
>EX5B_BUCBP (Q89AB3) Exodeoxyribonuclease V beta chain (EC 3.1.11.5)| Length = 1180 Score = 32.0 bits (71), Expect = 1.7 Identities = 19/73 (26%), Positives = 37/73 (50%) Frame = -1 Query: 570 LEKLKSNLLLDMHLHEHIETLYKDIRHKAIIQYTFPFISVDLNLMAVAFQTSVSLLEKEL 391 L K S L+L + +H LY I K +Y F F+S+D+ + + + + L KE+ Sbjct: 140 LNKFNSELMLQNKILKHTYPLYLKISIK-FWKYYFAFLSLDITSILLEYFNNPKTLLKEI 198 Query: 390 AALITDNKIQARI 352 L+ ++ +++ Sbjct: 199 LPLLNKTQLISKL 211
>BLM10_YEAST (P43583) Proteasome activator BLM10 (Bleomycin resistance protein| BLM10) Length = 2143 Score = 31.6 bits (70), Expect = 2.3 Identities = 17/109 (15%), Positives = 49/109 (44%), Gaps = 2/109 (1%) Frame = -1 Query: 582 CLGYLEKLKSNLLLDMHLHEHIETLYKDIRHKAI-IQYTFPFISVDLNLMAVAFQTSVSL 406 C + +N+ +D H+++ + ++ KD+ +K + ++ + V+ + ++ Sbjct: 411 CYSIWSSVSANVAIDTHMYDFVGSISKDVHNKILSSEHEKDVVGVEFGEFGIFTDDQMTF 470 Query: 405 LEKELAA-LITDNKIQARIDSHNKILYASHADQRNATFQRALQTGNEFE 262 + L L TD +I + + +YA + +++ F++ + E Sbjct: 471 MFNRLQGHLRTDGQIHSYSRTVKPFVYAINGSKKDRFFEKLVSLAKAIE 519
>R51A1_MOUSE (Q8C551) RAD51-associated protein 1 (RAD51-interacting protein)| (RAB22) Length = 337 Score = 31.2 bits (69), Expect = 3.0 Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 12/81 (14%) Frame = -3 Query: 367 DTGSHRLAQQDF-VRKSRRSKKRNL---PAGTADGQRV*ERCQVHASEGEPSQARV---- 212 D + + +DF VR+S+ SKK+ + PAG ++ +C+ + +P+ A + Sbjct: 195 DFDESKESDEDFGVRRSKESKKKTVQKKPAGEKKERKSKPKCEASVTSVDPAPAAIKSGS 254 Query: 211 ----QSEGSRKEAVRKSSAEC 161 Q+ G EA RK + C Sbjct: 255 PSLPQAVGLPSEATRKPAIMC 275
>DRL8_ARATH (Q8W3K3) Putative disease resistance protein At1g58400| Length = 910 Score = 30.0 bits (66), Expect = 6.6 Identities = 12/36 (33%), Positives = 20/36 (55%) Frame = -3 Query: 499 HSPQSHHSVHIPIHIC*SQLDGCCLPDLCVPVRERV 392 + P+ H P H+ LDGCCL + +P+ E++ Sbjct: 763 YMPKLPDEQHFPSHLTSISLDGCCLVEDPLPILEKL 798
>MUTB_PORGI (Q59677) Methylmalonyl-CoA mutase large subunit (EC 5.4.99.2)| (MCM-alpha) Length = 715 Score = 30.0 bits (66), Expect = 6.6 Identities = 22/64 (34%), Positives = 35/64 (54%) Frame = -1 Query: 522 HIETLYKDIRHKAIIQYTFPFISVDLNLMAVAFQTSVSLLEKELAALITDNKIQARIDSH 343 ++E+L ++ HKA +T ++ MA A +T + L E AA T QARIDSH Sbjct: 403 YVESLTNELVHKA---WTLIKEVQEMGGMAKAIETGLPKLRIEEAAART----QARIDSH 455 Query: 342 NKIL 331 +++ Sbjct: 456 QQVI 459
>RAD50_SULAC (O33600) DNA double-strand break repair rad50 ATPase| Length = 886 Score = 29.6 bits (65), Expect = 8.7 Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 1/88 (1%) Frame = -1 Query: 501 DIRHKAIIQYTFPFISVDLNLMAVAFQTSVSLLEKELAAL-ITDNKIQARIDSHNKILYA 325 D HKA I+ ++LN A Q ++ L KE L T NK+Q + +K Sbjct: 445 DSEHKAKIREEIKVQLLELNKQITALQARINSLIKEREELEATRNKLQLELQKRSKEKGI 504 Query: 324 SHADQRNATFQRALQTGNEFERDVKSML 241 A + QR + N+ + ++ S+L Sbjct: 505 YEAKLKE--LQRLEEEKNKLQNEILSLL 530
>CHLN_PINTH (P41646) Light-independent protochlorophyllide reductase subunit N| (EC 1.18.-.-) (LI-POR subunit N) (DPOR subunit N) Length = 467 Score = 29.6 bits (65), Expect = 8.7 Identities = 14/41 (34%), Positives = 21/41 (51%) Frame = +1 Query: 280 LQCPLEGCVSLIGVTCVQNLVVRVYASLYLVIGDKRCQLFL 402 L+C S ++CV L ++ S +LV+G K C FL Sbjct: 11 LECETGNYHSFCPISCVSWLYQKIEDSFFLVVGTKTCGYFL 51
>CHLN_PINCO (P26180) Light-independent protochlorophyllide reductase subunit N| (EC 1.18.-.-) (LI-POR subunit N) (DPOR subunit N) Length = 459 Score = 29.6 bits (65), Expect = 8.7 Identities = 14/41 (34%), Positives = 21/41 (51%) Frame = +1 Query: 280 LQCPLEGCVSLIGVTCVQNLVVRVYASLYLVIGDKRCQLFL 402 L+C S ++CV L ++ S +LV+G K C FL Sbjct: 11 LECETGNYHSFCPISCVSWLYQKIEDSFFLVVGTKTCGYFL 51 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 89,240,056 Number of Sequences: 219361 Number of extensions: 1693013 Number of successful extensions: 4557 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 4355 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4557 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6541540170 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
