ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags35n09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT017931.1| Zea mays clone EL01N0520A01.c mRNA sequence 220 5e-54
2gb|AF106844.1|AF106844 Oryza sativa rCOP11 protein (rCOP11) mRNA... 210 4e-51
3dbj|AK101870.1| Oryza sativa (japonica cultivar-group) cDNA clon... 210 4e-51
4gb|AY110081.1| Zea mays CL32446_1 mRNA sequence 141 3e-30
5gb|AC134236.4| Oryza sativa (japonica cultivar-group) chromosome... 129 1e-26
6gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 129 1e-26
7dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 129 1e-26
8gb|AF160800.1|AF160800 Oryza sativa subsp. indica constitutive p... 129 1e-26
9gb|AF377670.1| Zea mays subsp. mays isolate CHI349 RFLP marker f... 86 2e-13
10gb|AF377667.1| Zea mays subsp. mays isolate Tx601 RFLP marker fu... 86 2e-13
11gb|AF377658.1| Zea mays subsp. mays isolate CHH160 RFLP marker f... 86 2e-13
12gb|AF377656.1| Zea mays subsp. mays isolate OAX70 RFLP marker fu... 86 2e-13
13gb|AF377654.1| Zea mays subsp. mays isolate YUC7 RFLP marker fus... 86 2e-13
14gb|AF377652.1| Zea mays subsp. mays isolate PUE32 RFLP marker fu... 86 2e-13
15gb|AF377647.1| Zea mays subsp. mays isolate MAG450 RFLP marker f... 86 2e-13
16gb|AF377668.1| Zea mays subsp. mays isolate B73 RFLP marker fus6... 78 4e-11
17gb|AF377666.1| Zea mays subsp. mays isolate T8 RFLP marker fus6 ... 78 4e-11
18gb|AF377665.1| Zea mays subsp. mays isolate OH43 RFLP marker fus... 78 4e-11
19gb|AF377664.1| Zea mays subsp. mays isolate NC258 RFLP marker fu... 78 4e-11
20gb|AF377663.1| Zea mays subsp. mays isolate Mo24W RFLP marker fu... 78 4e-11
21gb|AF377660.1| Zea mays subsp. mays isolate SAN329 RFLP marker f... 78 4e-11
22gb|AF377659.1| Zea mays subsp. mays isolate APC13 RFLP marker fu... 78 4e-11
23gb|AF377657.1| Zea mays subsp. mays isolate VEN453 RFLP marker f... 78 4e-11
24gb|AF377655.1| Zea mays subsp. mays isolate SIN2 RFLP marker fus... 78 4e-11
25gb|AF377653.1| Zea mays subsp. mays isolate GUA14 RFLP marker fu... 78 4e-11
26gb|AF377651.1| Zea mays subsp. mays isolate GUA131 RFLP marker f... 78 4e-11
27gb|AF377650.1| Zea mays subsp. mays isolate OAX68 RFLP marker fu... 78 4e-11
28gb|AF377649.1| Zea mays subsp. mays isolate URGII RFLP marker fu... 78 4e-11
29gb|AF377648.1| Zea mays subsp. mays isolate MEX48 RFLP marker fu... 78 4e-11
30gb|AF377669.1| Tripsacum dactyloides RFLP marker fus6 sequence 70 1e-08
31gb|AC079029.11| Oryza sativa chromosome 10 BAC OSJNBb0028C01 gen... 64 6e-07
32dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 64 6e-07
33gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 64 6e-07
34gb|AF377662.1| Zea mays subsp. mays isolate Ky21 RFLP marker fus... 62 3e-06
35gb|AF377661.1| Zea mays subsp. mays isolate W153R RFLP marker fu... 62 3e-06
36gb|AC148764.16| Medicago truncatula clone mth2-30o12, complete s... 52 0.002
37gb|AC160924.1| Medicago truncatula chromosome 7 BAC clone mte1-7... 52 0.002
38dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.59
39dbj|AP002971.2| Oryza sativa (japonica cultivar-group) genomic D... 44 0.59
40emb|AL806528.14| Mouse DNA sequence from clone RP23-190C17 on ch... 44 0.59
41gb|AC164650.3| Mus musculus BAC clone RP23-47A4 from chromosome ... 42 2.3
42gb|AF280813.3| Homo sapiens chromosome 8 clone RP1-144M5 map 8p2... 42 2.3
43gb|AC090097.5| Homo sapiens chromosome 8, clone RP11-369C6, comp... 42 2.3
44gb|AC092472.3| Homo sapiens chromosome 8 clone RP1-96P7 map map ... 42 2.3
45gb|AC090274.6| Homo sapiens chromosome 8, clone RP1-144M5, compl... 42 2.3
46gb|DP000048.1| Cercopithecus aethiops target 106 genomic scaffold 42 2.3
47gb|AC155233.2| Mus musculus BAC clone RP24-381F23 from 12, compl... 42 2.3
48gb|AC124759.4| Mus musculus BAC clone RP23-132N7 from 1, complet... 42 2.3
49gb|AC145545.2| Homo sapiens chromosome UNKNOWN clone RP11-1365M9... 40 9.2
50gb|BC052710.1| Mus musculus a disintegrin and metallopeptidase d... 40 9.2
51gb|BC047156.1| Mus musculus a disintegrin and metallopeptidase d... 40 9.2
52gb|AC129778.5| Homo sapiens BAC clone RP11-1221G12 from UL, comp... 40 9.2
53emb|AL845321.4| Human DNA sequence from clone RP11-236F9 on chro... 40 9.2
54emb|AL591379.18| Human DNA sequence from clone RP11-381O7 on chr... 40 9.2
55emb|AL445665.20| Human DNA sequence from clone RP11-574E24 on ch... 40 9.2
56gb|AC120541.8| Mus musculus, clone RP23-286L18, complete sequence 40 9.2
57emb|AL079341.19|HSDJ319M7 Human DNA sequence from clone RP1-319M... 40 9.2
58ref|NM_007404.1| Mus musculus a disintegrin and metallopeptidase... 40 9.2
59gb|AC090195.5| Homo sapiens chromosome 8, clone RP11-366K18, com... 40 9.2
60dbj|AK148174.1| Mus musculus B16 F10Y cells cDNA, RIKEN full-len... 40 9.2
61dbj|AK155582.1| Mus musculus B6-derived CD11 +ve dendritic cells... 40 9.2
62dbj|AK155672.1| Mus musculus B6-derived CD11 +ve dendritic cells... 40 9.2
63gb|AC090196.5| Homo sapiens chromosome 8, clone RP11-766A10, com... 40 9.2
64dbj|AK161778.1| Mus musculus 13 days embryo forelimb cDNA, RIKEN... 40 9.2
65ref|NM_001014772.1| Rattus norvegicus a disintegrin and metallop... 40 9.2
66gb|AY953138.1| Rattus norvegicus ADAM9 mRNA, complete cds 40 9.2
67emb|AL845331.2| Human DNA sequence from clone RP11-407P15 on chr... 40 9.2
68gb|AC156553.17| Mus musculus chromosome 8, clone RP23-106I21, co... 40 9.2
69gb|AY449459.1| Oikopleura dioica clone BACOIKO003 5xk14, complet... 40 9.2
70dbj|AK122188.1| Mus musculus mRNA for mKIAA0021 protein 40 9.2
71gb|U41765.1|MMU41765 Mus musculus metalloprotease/disintegrin/cy... 40 9.2
72gb|AC142104.4| Mus musculus BAC clone RP24-313C11 from 8, comple... 40 9.2
73dbj|AP006113.1| Lotus japonicus genomic DNA, chromosome 4, clone... 40 9.2
74dbj|AP004946.1| Lotus japonicus genomic DNA, chromosome , clone:... 40 9.2 
>gb|BT017931.1| Zea mays clone EL01N0520A01.c mRNA sequence
          Length = 1405

 Score =  220 bits (111), Expect = 5e-54
 Identities = 354/435 (81%)
 Strand = Plus / Minus

                                                                        
Query: 202  cttctgactgtactcgtgcttgagaaggttcgccctcagaagcatggacttgacatctct 261
            ||||||| |||| || |||||||| ||||| || | ||||||||||||||||||||||||
Sbjct: 1211 cttctgaatgtaatcatgcttgaggaggttggcacgcagaagcatggacttgacatctct 1152

                                                                        
Query: 262  ctcaaactcgttgcccgtctgcagtgcccgctggaaggttgcgtttctttgatcggcgtg 321
            |||||| || ||||| || || ||  | |||||||| ||||| ||||| || || || ||
Sbjct: 1151 ctcaaagtcattgccggtttgaaggacacgctggaaagttgcatttctctggtcagcatg 1092

                                                                        
Query: 322  acttgcgtacaaaatcttgttgtgcgagtctatgcgagcctgtatcttgttatcggtgat 381
             |||||||| |  ||||||||||| |||||||| || |||||||| ||||  || || ||
Sbjct: 1091 ccttgcgtaaaggatcttgttgtgggagtctatccgggcctgtattttgtcctcagtaat 1032

                                                                        
Query: 382  aagcgctgccaactctttctctaacagggacacagaggtctggaaggcaacagccatcaa 441
             || || |||| ||| ||||  | || ||| || || ||||  |||||  | ||||||  
Sbjct: 1031 cagtgcggccagctccttctgcagcatggagaccgaagtcttaaaggcggctgccatcgt 972

                                                                        
Query: 442  gttgagatcaacagatatgaatgggaatgtgtactgaatgatggctttgtggcgaatgtc 501
            |||||| ||||||||||| || || | ||||||||| ||||| |||||||||||||| ||
Sbjct: 971  gttgaggtcaacagatataaaaggaagtgtgtactgtatgatcgctttgtggcgaatctc 912

                                                                        
Query: 502  cttgtacagagtttcgatatgctcgtgcaaatgcatatccagcagcaggtttgacttcag 561
            | | |||||||| || | |||||  |||||||| |||||||| |||||||| | ||| ||
Sbjct: 911  catatacagagtctctacatgctgatgcaaatggatatccaggagcaggttaggctttag 852

                                                                        
Query: 562  cttctcaagatatcccagacatgacccgtagcggcttgcataaaaatcatttaccagctc 621
            |||||||||||  ||||  || || || ||||| ||||||||||||||||| ||||||||
Sbjct: 851  cttctcaagatgacccaagcaagatccatagcgacttgcataaaaatcattaaccagctc 792

                           
Query: 622  ccttacttcaggcac 636
            |||||||||||||||
Sbjct: 791  ccttacttcaggcac 777
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>gb|AF106844.1|AF106844 Oryza sativa rCOP11 protein (rCOP11) mRNA, complete cds
          Length = 1730

 Score =  210 bits (106), Expect = 4e-51
 Identities = 334/410 (81%)
 Strand = Plus / Minus

                                                                        
Query: 227  aggttcgccctcagaagcatggacttgacatctctctcaaactcgttgcccgtctgcagt 286
            ||||| || ||||||||||  ||||| ||||||||||||||||| ||||| || || || 
Sbjct: 1336 aggttagctctcagaagcaaagacttaacatctctctcaaactcattgcctgtttgaaga 1277

                                                                        
Query: 287  gcccgctggaaggttgcgtttctttgatcggcgtgacttgcgtacaaaatcttgttgtgc 346
             | || || || ||||| |||||||| || || || || || || | |||||||||||| 
Sbjct: 1276 acacgttgaaaagttgcatttctttggtcagcatgcctcgcataaagaatcttgttgtgg 1217

                                                                        
Query: 347  gagtctatgcgagcctgtatcttgttatcggtgataagcgctgccaactctttctctaac 406
            |||||||| ||||||||||| ||||| || ||||| || || || | ||||||||| |||
Sbjct: 1216 gagtctatccgagcctgtattttgttctcagtgatcagtgcagctacctctttctccaac 1157

                                                                        
Query: 407  agggacacagaggtctggaaggcaacagccatcaagttgagatcaacagatatgaatggg 466
            | |||||| || |||   || ||| ||||||||  ||| |||||||||||||| ||||| 
Sbjct: 1156 atggacacggacgtcataaaagcagcagccatcgtgttaagatcaacagatataaatgga 1097

                                                                        
Query: 467  aatgtgtactgaatgatggctttgtggcgaatgtccttgtacagagtttcgatatgctcg 526
            | ||| ||||| ||||| |||||||||||||| ||| |||| |||||||| | ||| |||
Sbjct: 1096 agtgtatactgtatgatagctttgtggcgaatatccatgtatagagtttctacatgatcg 1037

                                                                        
Query: 527  tgcaaatgcatatccagcagcaggtttgacttcagcttctcaagatatcccagacatgac 586
            |||||||| ||||||| ||| ||||||| ||| |||||||||||||   ||| |||||| 
Sbjct: 1036 tgcaaatgaatatccaacaggaggtttgtctttagcttctcaagatgctccaaacatgat 977

                                                              
Query: 587  ccgtagcggcttgcataaaaatcatttaccagctcccttacttcaggcac 636
            || ||||| |||| ||| |||||||| || || ||||| |||||||||||
Sbjct: 976  ccatagcgacttgaatagaaatcattaacaagttccctcacttcaggcac 927
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>dbj|AK101870.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033070E21, full
            insert sequence
          Length = 1763

 Score =  210 bits (106), Expect = 4e-51
 Identities = 334/410 (81%)
 Strand = Plus / Minus

                                                                        
Query: 227  aggttcgccctcagaagcatggacttgacatctctctcaaactcgttgcccgtctgcagt 286
            ||||| || ||||||||||  ||||| ||||||||||||||||| ||||| || || || 
Sbjct: 1387 aggttagctctcagaagcaaagacttaacatctctctcaaactcattgcctgtttgaagg 1328

                                                                        
Query: 287  gcccgctggaaggttgcgtttctttgatcggcgtgacttgcgtacaaaatcttgttgtgc 346
             | || || || ||||| |||||||| || || || || || || | |||||||||||| 
Sbjct: 1327 acacgttgaaaagttgcatttctttggtcagcatgcctcgcataaagaatcttgttgtgg 1268

                                                                        
Query: 347  gagtctatgcgagcctgtatcttgttatcggtgataagcgctgccaactctttctctaac 406
            |||||||| ||||||||||| ||||| || ||||| || || || | ||||||||| |||
Sbjct: 1267 gagtctatccgagcctgtattttgttctcagtgatcagtgcagctagctctttctccaac 1208

                                                                        
Query: 407  agggacacagaggtctggaaggcaacagccatcaagttgagatcaacagatatgaatggg 466
            | |||||| || |||   || ||| ||||||||  ||| |||||||||||||| ||||| 
Sbjct: 1207 atggacacggacgtcataaaagcagcagccatcgtgttaagatcaacagatataaatgga 1148

                                                                        
Query: 467  aatgtgtactgaatgatggctttgtggcgaatgtccttgtacagagtttcgatatgctcg 526
            | ||| ||||| ||||| |||||||||||||| ||| |||| |||||||| | ||| |||
Sbjct: 1147 agtgtatactgtatgatagctttgtggcgaatatccatgtatagagtttctacatgatcg 1088

                                                                        
Query: 527  tgcaaatgcatatccagcagcaggtttgacttcagcttctcaagatatcccagacatgac 586
            |||||||| ||||||| ||| ||||||| ||| |||||||||||||   ||| |||||| 
Sbjct: 1087 tgcaaatgaatatccaacaggaggtttgtctttagcttctcaagatgctccaaacatgat 1028

                                                              
Query: 587  ccgtagcggcttgcataaaaatcatttaccagctcccttacttcaggcac 636
            || ||||| |||| ||| |||||||| || || ||||| |||||||||||
Sbjct: 1027 ccatagcgacttgaatagaaatcattaacaagttccctcacttcaggcac 978
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>gb|AY110081.1| Zea mays CL32446_1 mRNA sequence
          Length = 897

 Score =  141 bits (71), Expect = 3e-30
 Identities = 296/371 (79%)
 Strand = Plus / Plus

                                                                       
Query: 202 cttctgactgtactcgtgcttgagaaggttcgccctcagaagcatggacttgacatctct 261
           ||||||| |||| || |||||||| ||||| || | |||||||||||||||| |||||||
Sbjct: 198 cttctgaatgtaatcatgcttgaggaggttggcacgcagaagcatggacttggcatctct 257

                                                                       
Query: 262 ctcaaactcgttgcccgtctgcagtgcccgctggaaggttgcgtttctttgatcggcgtg 321
           |||||| || ||||| || || ||  | |||||||| ||||| ||||| || || || ||
Sbjct: 258 ctcaaagtcattgccggtttgaaggacacgctggaaagttgcatttctctggtcagcatg 317

                                                                       
Query: 322 acttgcgtacaaaatcttgttgtgcgagtctatgcgagcctgtatcttgttatcggtgat 381
            |||||||| |  ||||||||||| |||||||| ||  ||||||| |||   || || ||
Sbjct: 318 ccttgcgtaaaggatcttgttgtgggagtctatccggccctgtattttgccctcagtaat 377

                                                                       
Query: 382 aagcgctgccaactctttctctaacagggacacagaggtctggaaggcaacagccatcaa 441
            || || |||| ||| ||||  | || ||| || || ||||  |||||  | ||||||  
Sbjct: 378 cagtgcggccagctccttctgcagcatggagaccgaagtcttaaaggcggctgccatcgt 437

                                                                       
Query: 442 gttgagatcaacagatatgaatgggaatgtgtactgaatgatggctttgtggcgaatgtc 501
           |||||| ||||||||||| || || | ||||||||| ||||| |||||||||||||| ||
Sbjct: 438 gttgaggtcaacagatataaaaggaagtgtgtactgtatgatcgctttgtggcgaatctc 497

                                                                       
Query: 502 cttgtacagagtttcgatatgctcgtgcaaatgcatatccagcagcaggtttgacttcag 561
           | | |||||||| || | |||||  |||||||| |||||||| |||||||| | ||| ||
Sbjct: 498 catatacagagtctctacatgctgatgcaaatggatatccaggagcaggttaggctttag 557

                      
Query: 562 cttctcaagat 572
           |||||||||||
Sbjct: 558 cttctcaagat 568
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>gb|AC134236.4| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0056G13, complete sequence
          Length = 148011

 Score =  129 bits (65), Expect = 1e-26
 Identities = 176/213 (82%)
 Strand = Plus / Plus

                                                                         
Query: 360   cctgtatcttgttatcggtgataagcgctgccaactctttctctaacagggacacagagg 419
             ||||||| ||||| || ||||| || || || | ||||||||| |||| |||||| || |
Sbjct: 70595 cctgtattttgttctcagtgatcagtgcagctagctctttctccaacatggacacggacg 70654

                                                                         
Query: 420   tctggaaggcaacagccatcaagttgagatcaacagatatgaatgggaatgtgtactgaa 479
             ||   || ||| ||||||||  ||| |||||||||||||| ||||| | ||| ||||| |
Sbjct: 70655 tcataaaagcagcagccatcgtgttaagatcaacagatataaatggaagtgtatactgta 70714

                                                                         
Query: 480   tgatggctttgtggcgaatgtccttgtacagagtttcgatatgctcgtgcaaatgcatat 539
             |||| |||||||||||||| ||| |||| |||||||| | ||| ||||||||||| ||||
Sbjct: 70715 tgatagctttgtggcgaatatccatgtatagagtttctacatgatcgtgcaaatgaatat 70774

                                              
Query: 540   ccagcagcaggtttgacttcagcttctcaagat 572
             ||| ||| ||||||| ||| |||||||||||||
Sbjct: 70775 ccaacaggaggtttgtctttagcttctcaagat 70807



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 111/137 (81%)
 Strand = Plus / Plus

                                                                         
Query: 227   aggttcgccctcagaagcatggacttgacatctctctcaaactcgttgcccgtctgcagt 286
             ||||| || ||||||||||  ||||| ||||||||||||||||| ||||| || || || 
Sbjct: 70387 aggttagctctcagaagcaaagacttaacatctctctcaaactcattgcctgtttgaagg 70446

                                                                         
Query: 287   gcccgctggaaggttgcgtttctttgatcggcgtgacttgcgtacaaaatcttgttgtgc 346
              | || || || ||||| |||||||| || || || || || || | |||||||||||| 
Sbjct: 70447 acacgttgaaaagttgcatttctttggtcagcatgcctcgcataaagaatcttgttgtgg 70506

                              
Query: 347   gagtctatgcgagcctg 363
             |||||||| ||||||||
Sbjct: 70507 gagtctatccgagcctg 70523
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  129 bits (65), Expect = 1e-26
 Identities = 176/213 (82%)
 Strand = Plus / Plus

                                                                          
Query: 360    cctgtatcttgttatcggtgataagcgctgccaactctttctctaacagggacacagagg 419
              ||||||| ||||| || ||||| || || || | ||||||||| |||| |||||| || |
Sbjct: 915398 cctgtattttgttctcagtgatcagtgcagctagctctttctccaacatggacacggacg 915457

                                                                          
Query: 420    tctggaaggcaacagccatcaagttgagatcaacagatatgaatgggaatgtgtactgaa 479
              ||   || ||| ||||||||  ||| |||||||||||||| ||||| | ||| ||||| |
Sbjct: 915458 tcataaaagcagcagccatcgtgttaagatcaacagatataaatggaagtgtatactgta 915517

                                                                          
Query: 480    tgatggctttgtggcgaatgtccttgtacagagtttcgatatgctcgtgcaaatgcatat 539
              |||| |||||||||||||| ||| |||| |||||||| | ||| ||||||||||| ||||
Sbjct: 915518 tgatagctttgtggcgaatatccatgtatagagtttctacatgatcgtgcaaatgaatat 915577

                                               
Query: 540    ccagcagcaggtttgacttcagcttctcaagat 572
              ||| ||| ||||||| ||| |||||||||||||
Sbjct: 915578 ccaacaggaggtttgtctttagcttctcaagat 915610



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 111/137 (81%)
 Strand = Plus / Plus

                                                                          
Query: 227    aggttcgccctcagaagcatggacttgacatctctctcaaactcgttgcccgtctgcagt 286
              ||||| || ||||||||||  ||||| ||||||||||||||||| ||||| || || || 
Sbjct: 915190 aggttagctctcagaagcaaagacttaacatctctctcaaactcattgcctgtttgaagg 915249

                                                                          
Query: 287    gcccgctggaaggttgcgtttctttgatcggcgtgacttgcgtacaaaatcttgttgtgc 346
               | || || || ||||| |||||||| || || || || || || | |||||||||||| 
Sbjct: 915250 acacgttgaaaagttgcatttctttggtcagcatgcctcgcataaagaatcttgttgtgg 915309

                               
Query: 347    gagtctatgcgagcctg 363
              |||||||| ||||||||
Sbjct: 915310 gagtctatccgagcctg 915326
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3,
              complete sequence
          Length = 36192742

 Score =  129 bits (65), Expect = 1e-26
 Identities = 176/213 (82%)
 Strand = Plus / Plus

                                                                          
Query: 360    cctgtatcttgttatcggtgataagcgctgccaactctttctctaacagggacacagagg 419
              ||||||| ||||| || ||||| || || || | ||||||||| |||| |||||| || |
Sbjct: 915396 cctgtattttgttctcagtgatcagtgcagctagctctttctccaacatggacacggacg 915455

                                                                          
Query: 420    tctggaaggcaacagccatcaagttgagatcaacagatatgaatgggaatgtgtactgaa 479
              ||   || ||| ||||||||  ||| |||||||||||||| ||||| | ||| ||||| |
Sbjct: 915456 tcataaaagcagcagccatcgtgttaagatcaacagatataaatggaagtgtatactgta 915515

                                                                          
Query: 480    tgatggctttgtggcgaatgtccttgtacagagtttcgatatgctcgtgcaaatgcatat 539
              |||| |||||||||||||| ||| |||| |||||||| | ||| ||||||||||| ||||
Sbjct: 915516 tgatagctttgtggcgaatatccatgtatagagtttctacatgatcgtgcaaatgaatat 915575

                                               
Query: 540    ccagcagcaggtttgacttcagcttctcaagat 572
              ||| ||| ||||||| ||| |||||||||||||
Sbjct: 915576 ccaacaggaggtttgtctttagcttctcaagat 915608



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 111/137 (81%)
 Strand = Plus / Plus

                                                                          
Query: 227    aggttcgccctcagaagcatggacttgacatctctctcaaactcgttgcccgtctgcagt 286
              ||||| || ||||||||||  ||||| ||||||||||||||||| ||||| || || || 
Sbjct: 915188 aggttagctctcagaagcaaagacttaacatctctctcaaactcattgcctgtttgaagg 915247

                                                                          
Query: 287    gcccgctggaaggttgcgtttctttgatcggcgtgacttgcgtacaaaatcttgttgtgc 346
               | || || || ||||| |||||||| || || || || || || | |||||||||||| 
Sbjct: 915248 acacgttgaaaagttgcatttctttggtcagcatgcctcgcataaagaatcttgttgtgg 915307

                               
Query: 347    gagtctatgcgagcctg 363
              |||||||| ||||||||
Sbjct: 915308 gagtctatccgagcctg 915324
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>gb|AF160800.1|AF160800 Oryza sativa subsp. indica constitutive photomorphogenic 11 (COP11)
            gene, complete cds
          Length = 6183

 Score =  129 bits (65), Expect = 1e-26
 Identities = 176/213 (82%)
 Strand = Plus / Minus

                                                                        
Query: 360  cctgtatcttgttatcggtgataagcgctgccaactctttctctaacagggacacagagg 419
            ||||||| ||||| || ||||| || || || | ||||||||| |||| |||||| || |
Sbjct: 5039 cctgtattttgttctcagtgatcagtgcagctacctctttctccaacatggacacggacg 4980

                                                                        
Query: 420  tctggaaggcaacagccatcaagttgagatcaacagatatgaatgggaatgtgtactgaa 479
            ||   || ||| ||||||||  ||| |||||||||||||| ||||| | ||| ||||| |
Sbjct: 4979 tcataaaagcagcagccatcgtgttaagatcaacagatataaatggaagtgtatactgta 4920

                                                                        
Query: 480  tgatggctttgtggcgaatgtccttgtacagagtttcgatatgctcgtgcaaatgcatat 539
            |||| |||||||||||||| ||| |||| |||||||| | ||| ||||||||||| ||||
Sbjct: 4919 tgatagctttgtggcgaatatccatgtatagagtttctacatgatcgtgcaaatgaatat 4860

                                             
Query: 540  ccagcagcaggtttgacttcagcttctcaagat 572
            ||| ||| ||||||| ||| |||||||||||||
Sbjct: 4859 ccaacaggaggtttgtctttagcttctcaagat 4827



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 111/137 (81%)
 Strand = Plus / Minus

                                                                        
Query: 227  aggttcgccctcagaagcatggacttgacatctctctcaaactcgttgcccgtctgcagt 286
            ||||| || ||||||||||  ||||| ||||||||||||||||| ||||| || || || 
Sbjct: 5246 aggttagctctcagaagcaaagacttaacatctctctcaaactcattgcctgtttgaaga 5187

                                                                        
Query: 287  gcccgctggaaggttgcgtttctttgatcggcgtgacttgcgtacaaaatcttgttgtgc 346
             | || || || ||||| |||||||| || || || || || || | |||||||||||| 
Sbjct: 5186 acacgttgaaaagttgcatttctttggtcagcatgcctcgcataaagaatcttgttgtgg 5127

                             
Query: 347  gagtctatgcgagcctg 363
            |||||||| ||||||||
Sbjct: 5126 gagtctatccgagcctg 5110
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>gb|AF377670.1| Zea mays subsp. mays isolate CHI349 RFLP marker fus6 sequence
          Length = 263

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 67/75 (89%)
 Strand = Plus / Minus

                                                                       
Query: 202 cttctgactgtactcgtgcttgagaaggttcgccctcagaagcatggacttgacatctct 261
           ||||||| |||| || |||||||| ||||| |||| ||||||||||||||||||||||||
Sbjct: 101 cttctgaatgtaatcatgcttgaggaggttggcccgcagaagcatggacttgacatctct 42

                          
Query: 262 ctcaaactcgttgcc 276
           |||||| || |||||
Sbjct: 41  ctcaaagtcattgcc 27
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>gb|AF377667.1| Zea mays subsp. mays isolate Tx601 RFLP marker fus6 sequence
          Length = 252

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 67/75 (89%)
 Strand = Plus / Minus

                                                                       
Query: 202 cttctgactgtactcgtgcttgagaaggttcgccctcagaagcatggacttgacatctct 261
           ||||||| |||| || |||||||| ||||| |||| ||||||||||||||||||||||||
Sbjct: 101 cttctgaatgtaatcatgcttgaggaggttagcccgcagaagcatggacttgacatctct 42

                          
Query: 262 ctcaaactcgttgcc 276
           |||||| || |||||
Sbjct: 41  ctcaaagtcattgcc 27
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>gb|AF377658.1| Zea mays subsp. mays isolate CHH160 RFLP marker fus6 sequence
          Length = 252

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 67/75 (89%)
 Strand = Plus / Minus

                                                                       
Query: 202 cttctgactgtactcgtgcttgagaaggttcgccctcagaagcatggacttgacatctct 261
           ||||||| |||| || |||||||| ||||| |||| ||||||||||||||||||||||||
Sbjct: 101 cttctgaatgtaatcatgcttgaggaggttagcccgcagaagcatggacttgacatctct 42

                          
Query: 262 ctcaaactcgttgcc 276
           |||||| || |||||
Sbjct: 41  ctcaaagtcattgcc 27
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>gb|AF377656.1| Zea mays subsp. mays isolate OAX70 RFLP marker fus6 sequence
          Length = 257

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 67/75 (89%)
 Strand = Plus / Minus

                                                                       
Query: 202 cttctgactgtactcgtgcttgagaaggttcgccctcagaagcatggacttgacatctct 261
           ||||||| |||| || |||||||| ||||| |||| ||||||||||||||||||||||||
Sbjct: 101 cttctgaatgtaatcatgcttgaggaggttggcccgcagaagcatggacttgacatctct 42

                          
Query: 262 ctcaaactcgttgcc 276
           |||||| || |||||
Sbjct: 41  ctcaaagtcattgcc 27
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>gb|AF377654.1| Zea mays subsp. mays isolate YUC7 RFLP marker fus6 sequence
          Length = 252

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 67/75 (89%)
 Strand = Plus / Minus

                                                                       
Query: 202 cttctgactgtactcgtgcttgagaaggttcgccctcagaagcatggacttgacatctct 261
           ||||||| |||| || |||||||| ||||| |||| ||||||||||||||||||||||||
Sbjct: 101 cttctgaatgtaatcatgcttgaggaggttagcccgcagaagcatggacttgacatctct 42

                          
Query: 262 ctcaaactcgttgcc 276
           |||||| || |||||
Sbjct: 41  ctcaaagtcattgcc 27
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>gb|AF377652.1| Zea mays subsp. mays isolate PUE32 RFLP marker fus6 sequence
          Length = 263

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 67/75 (89%)
 Strand = Plus / Minus

                                                                       
Query: 202 cttctgactgtactcgtgcttgagaaggttcgccctcagaagcatggacttgacatctct 261
           ||||||| |||| || |||||||| ||||| |||| ||||||||||||||||||||||||
Sbjct: 101 cttctgaatgtaatcatgcttgaggaggttggcccgcagaagcatggacttgacatctct 42

                          
Query: 262 ctcaaactcgttgcc 276
           |||||| || |||||
Sbjct: 41  ctcaaagtcattgcc 27
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>gb|AF377647.1| Zea mays subsp. mays isolate MAG450 RFLP marker fus6 sequence
          Length = 255

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 67/75 (89%)
 Strand = Plus / Minus

                                                                       
Query: 202 cttctgactgtactcgtgcttgagaaggttcgccctcagaagcatggacttgacatctct 261
           ||||||| |||| || |||||||| ||||| |||| ||||||||||||||||||||||||
Sbjct: 101 cttctgaatgtaatcatgcttgaggaggttggcccgcagaagcatggacttgacatctct 42

                          
Query: 262 ctcaaactcgttgcc 276
           |||||| || |||||
Sbjct: 41  ctcaaagtcattgcc 27
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>gb|AF377668.1| Zea mays subsp. mays isolate B73 RFLP marker fus6 sequence
          Length = 255

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 66/75 (88%)
 Strand = Plus / Minus

                                                                       
Query: 202 cttctgactgtactcgtgcttgagaaggttcgccctcagaagcatggacttgacatctct 261
           ||||||| |||| || |||||||| ||||| || | ||||||||||||||||||||||||
Sbjct: 101 cttctgaatgtaatcatgcttgaggaggttggcacgcagaagcatggacttgacatctct 42

                          
Query: 262 ctcaaactcgttgcc 276
           |||||| || |||||
Sbjct: 41  ctcaaagtcattgcc 27
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>gb|AF377666.1| Zea mays subsp. mays isolate T8 RFLP marker fus6 sequence
          Length = 255

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 66/75 (88%)
 Strand = Plus / Minus

                                                                       
Query: 202 cttctgactgtactcgtgcttgagaaggttcgccctcagaagcatggacttgacatctct 261
           ||||||| |||| || |||||||| ||||| || | ||||||||||||||||||||||||
Sbjct: 101 cttctgaatgtaatcatgcttgaggaggttggcacgcagaagcatggacttgacatctct 42

                          
Query: 262 ctcaaactcgttgcc 276
           |||||| || |||||
Sbjct: 41  ctcaaagtcattgcc 27
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>gb|AF377665.1| Zea mays subsp. mays isolate OH43 RFLP marker fus6 sequence
          Length = 255

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 66/75 (88%)
 Strand = Plus / Minus

                                                                       
Query: 202 cttctgactgtactcgtgcttgagaaggttcgccctcagaagcatggacttgacatctct 261
           ||||||| |||| || |||||||| ||||| || | ||||||||||||||||||||||||
Sbjct: 101 cttctgaatgtaatcatgcttgaggaggttggcacgcagaagcatggacttgacatctct 42

                          
Query: 262 ctcaaactcgttgcc 276
           |||||| || |||||
Sbjct: 41  ctcaaagtcattgcc 27
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>gb|AF377664.1| Zea mays subsp. mays isolate NC258 RFLP marker fus6 sequence
          Length = 255

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 66/75 (88%)
 Strand = Plus / Minus

                                                                       
Query: 202 cttctgactgtactcgtgcttgagaaggttcgccctcagaagcatggacttgacatctct 261
           ||||||| |||| || |||||||| ||||| || | ||||||||||||||||||||||||
Sbjct: 101 cttctgaatgtaatcatgcttgaggaggttggcacgcagaagcatggacttgacatctct 42

                          
Query: 262 ctcaaactcgttgcc 276
           |||||| || |||||
Sbjct: 41  ctcaaagtcattgcc 27
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>gb|AF377663.1| Zea mays subsp. mays isolate Mo24W RFLP marker fus6 sequence
          Length = 255

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 66/75 (88%)
 Strand = Plus / Minus

                                                                       
Query: 202 cttctgactgtactcgtgcttgagaaggttcgccctcagaagcatggacttgacatctct 261
           ||||||| |||| || |||||||| ||||| || | ||||||||||||||||||||||||
Sbjct: 101 cttctgaatgtaatcatgcttgaggaggttggcacgcagaagcatggacttgacatctct 42

                          
Query: 262 ctcaaactcgttgcc 276
           |||||| || |||||
Sbjct: 41  ctcaaagtcattgcc 27
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>gb|AF377660.1| Zea mays subsp. mays isolate SAN329 RFLP marker fus6 sequence
          Length = 255

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 66/75 (88%)
 Strand = Plus / Minus

                                                                       
Query: 202 cttctgactgtactcgtgcttgagaaggttcgccctcagaagcatggacttgacatctct 261
           ||||||| |||| || |||||||| ||||| || | ||||||||||||||||||||||||
Sbjct: 101 cttctgaatgtaatcatgcttgaggaggttggcacgcagaagcatggacttgacatctct 42

                          
Query: 262 ctcaaactcgttgcc 276
           |||||| || |||||
Sbjct: 41  ctcaaagtcattgcc 27
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>gb|AF377659.1| Zea mays subsp. mays isolate APC13 RFLP marker fus6 sequence
          Length = 255

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 66/75 (88%)
 Strand = Plus / Minus

                                                                       
Query: 202 cttctgactgtactcgtgcttgagaaggttcgccctcagaagcatggacttgacatctct 261
           ||||||| |||| || |||||||| ||||| || | ||||||||||||||||||||||||
Sbjct: 101 cttctgaatgtaatcatgcttgaggaggttggcacgcagaagcatggacttgacatctct 42

                          
Query: 262 ctcaaactcgttgcc 276
           |||||| || |||||
Sbjct: 41  ctcaaagtcattgcc 27
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>gb|AF377657.1| Zea mays subsp. mays isolate VEN453 RFLP marker fus6 sequence
          Length = 255

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 66/75 (88%)
 Strand = Plus / Minus

                                                                       
Query: 202 cttctgactgtactcgtgcttgagaaggttcgccctcagaagcatggacttgacatctct 261
           ||||||| |||| || |||||||| ||||| || | ||||||||||||||||||||||||
Sbjct: 101 cttctgaatgtaatcatgcttgaggaggttggcacgcagaagcatggacttgacatctct 42

                          
Query: 262 ctcaaactcgttgcc 276
           |||||| || |||||
Sbjct: 41  ctcaaagtcattgcc 27
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>gb|AF377655.1| Zea mays subsp. mays isolate SIN2 RFLP marker fus6 sequence
          Length = 254

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 66/75 (88%)
 Strand = Plus / Minus

                                                                       
Query: 202 cttctgactgtactcgtgcttgagaaggttcgccctcagaagcatggacttgacatctct 261
           ||||||| |||| || |||||||| ||||| || | ||||||||||||||||||||||||
Sbjct: 101 cttctgaatgtaatcatgcttgaggaggttggcacgcagaagcatggacttgacatctct 42

                          
Query: 262 ctcaaactcgttgcc 276
           |||||| || |||||
Sbjct: 41  ctcaaagtcattgcc 27
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>gb|AF377653.1| Zea mays subsp. mays isolate GUA14 RFLP marker fus6 sequence
          Length = 255

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 66/75 (88%)
 Strand = Plus / Minus

                                                                       
Query: 202 cttctgactgtactcgtgcttgagaaggttcgccctcagaagcatggacttgacatctct 261
           ||||||| |||| || |||||||| ||||| || | ||||||||||||||||||||||||
Sbjct: 101 cttctgaatgtaatcatgcttgaggaggttggcacgcagaagcatggacttgacatctct 42

                          
Query: 262 ctcaaactcgttgcc 276
           |||||| || |||||
Sbjct: 41  ctcaaagtcattgcc 27
to top
>gb|AF377651.1| Zea mays subsp. mays isolate GUA131 RFLP marker fus6 sequence
          Length = 255

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 66/75 (88%)
 Strand = Plus / Minus

                                                                       
Query: 202 cttctgactgtactcgtgcttgagaaggttcgccctcagaagcatggacttgacatctct 261
           ||||||| |||| || |||||||| ||||| || | ||||||||||||||||||||||||
Sbjct: 101 cttctgaatgtaatcatgcttgaggaggttggcacgcagaagcatggacttgacatctct 42

                          
Query: 262 ctcaaactcgttgcc 276
           |||||| || |||||
Sbjct: 41  ctcaaagtcattgcc 27
to top
>gb|AF377650.1| Zea mays subsp. mays isolate OAX68 RFLP marker fus6 sequence
          Length = 255

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 66/75 (88%)
 Strand = Plus / Minus

                                                                       
Query: 202 cttctgactgtactcgtgcttgagaaggttcgccctcagaagcatggacttgacatctct 261
           ||||||| |||| || |||||||| ||||| || | ||||||||||||||||||||||||
Sbjct: 101 cttctgaatgtaatcatgcttgaggaggttggcacgcagaagcatggacttgacatctct 42

                          
Query: 262 ctcaaactcgttgcc 276
           |||||| || |||||
Sbjct: 41  ctcaaagtcattgcc 27
to top
>gb|AF377649.1| Zea mays subsp. mays isolate URGII RFLP marker fus6 sequence
          Length = 256

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 66/75 (88%)
 Strand = Plus / Minus

                                                                       
Query: 202 cttctgactgtactcgtgcttgagaaggttcgccctcagaagcatggacttgacatctct 261
           ||||||| |||| || |||||||| ||||| || | ||||||||||||||||||||||||
Sbjct: 101 cttctgaatgtaatcatgcttgaggaggttggcacgcagaagcatggacttgacatctct 42

                          
Query: 262 ctcaaactcgttgcc 276
           |||||| || |||||
Sbjct: 41  ctcaaagtcattgcc 27
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>gb|AF377648.1| Zea mays subsp. mays isolate MEX48 RFLP marker fus6 sequence
          Length = 255

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 66/75 (88%)
 Strand = Plus / Minus

                                                                       
Query: 202 cttctgactgtactcgtgcttgagaaggttcgccctcagaagcatggacttgacatctct 261
           ||||||| |||| || |||||||| ||||| || | ||||||||||||||||||||||||
Sbjct: 101 cttctgaatgtaatcatgcttgaggaggttggcacgcagaagcatggacttgacatctct 42

                          
Query: 262 ctcaaactcgttgcc 276
           |||||| || |||||
Sbjct: 41  ctcaaagtcattgcc 27
to top
>gb|AF377669.1| Tripsacum dactyloides RFLP marker fus6 sequence
          Length = 257

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 56/63 (88%)
 Strand = Plus / Minus

                                                                       
Query: 202 cttctgactgtactcgtgcttgagaaggttcgccctcagaagcatggacttgacatctct 261
           ||||||| |||| || |||||||| ||||| |||| ||||||||||||||||||||| ||
Sbjct: 101 cttctgaatgtaatcatgcttgaggaggttggcccgcagaagcatggacttgacatccct 42

              
Query: 262 ctc 264
           |||
Sbjct: 41  ctc 39
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>gb|AC079029.11| Oryza sativa chromosome 10 BAC OSJNBb0028C01 genomic sequence, complete
             sequence
          Length = 137366

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 41/44 (93%)
 Strand = Plus / Minus

                                                         
Query: 227   aggttcgccctcagaagcatggacttgacatctctctcaaactc 270
             ||||||||||||||||| |||||||| ||| |||||||||||||
Sbjct: 86560 aggttcgccctcagaaggatggacttcacacctctctcaaactc 86517
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 41/44 (93%)
 Strand = Plus / Plus

                                                            
Query: 227      aggttcgccctcagaagcatggacttgacatctctctcaaactc 270
                ||||||||||||||||| |||||||| ||| |||||||||||||
Sbjct: 19690952 aggttcgccctcagaaggatggacttcacacctctctcaaactc 19690995
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 41/44 (93%)
 Strand = Plus / Plus

                                                            
Query: 227      aggttcgccctcagaagcatggacttgacatctctctcaaactc 270
                ||||||||||||||||| |||||||| ||| |||||||||||||
Sbjct: 19702228 aggttcgccctcagaaggatggacttcacacctctctcaaactc 19702271
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>gb|AF377662.1| Zea mays subsp. mays isolate Ky21 RFLP marker fus6 sequence
          Length = 254

 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 65/75 (86%), Gaps = 1/75 (1%)
 Strand = Plus / Minus

                                                                       
Query: 202 cttctgactgtactcgtgcttgagaaggttcgccctcagaagcatggacttgacatctct 261
           ||||||| |||| || |||||||| ||||| || | |||||||| |||||||||||||||
Sbjct: 100 cttctgaatgtaatcatgcttgaggaggttggcacgcagaagca-ggacttgacatctct 42

                          
Query: 262 ctcaaactcgttgcc 276
           |||||| || |||||
Sbjct: 41  ctcaaagtcattgcc 27
to top
>gb|AF377661.1| Zea mays subsp. mays isolate W153R RFLP marker fus6 sequence
          Length = 254

 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 65/75 (86%), Gaps = 1/75 (1%)
 Strand = Plus / Minus

                                                                       
Query: 202 cttctgactgtactcgtgcttgagaaggttcgccctcagaagcatggacttgacatctct 261
           ||||||| |||| || |||||||| ||||| || | |||||||| |||||||||||||||
Sbjct: 100 cttctgaatgtaatcatgcttgaggaggttggcacgcagaagca-ggacttgacatctct 42

                          
Query: 262 ctcaaactcgttgcc 276
           |||||| || |||||
Sbjct: 41  ctcaaagtcattgcc 27
to top
>gb|AC148764.16| Medicago truncatula clone mth2-30o12, complete sequence
          Length = 107371

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                   
Query: 602   taaaaatcatttaccagctcccttacttcaggcactaa 639
             |||||||||||||  |||||||||||||| ||||||||
Sbjct: 64885 taaaaatcatttataagctcccttacttccggcactaa 64922
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>gb|AC160924.1| Medicago truncatula chromosome 7 BAC clone mte1-74g1, complete sequence
          Length = 98471

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                   
Query: 602   taaaaatcatttaccagctcccttacttcaggcactaa 639
             |||||||||||||  |||||||||||||| ||||||||
Sbjct: 21971 taaaaatcatttataagctcccttacttccggcactaa 22008
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                          
Query: 633      gcactaattccaaaaaattgcgaaaa 658
                |||||||||||||||||||| |||||
Sbjct: 12569442 gcactaattccaaaaaattgagaaaa 12569467
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>dbj|AP002971.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0537A05
          Length = 152396

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 633   gcactaattccaaaaaattgcgaaaa 658
             |||||||||||||||||||| |||||
Sbjct: 81052 gcactaattccaaaaaattgagaaaa 81077
to top
>emb|AL806528.14| Mouse DNA sequence from clone RP23-190C17 on chromosome 2, complete
             sequence
          Length = 214642

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 192   tttctgctgccttctgactgta 213
             ||||||||||||||||||||||
Sbjct: 64390 tttctgctgccttctgactgta 64369
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>gb|AC164650.3| Mus musculus BAC clone RP23-47A4 from chromosome 1, complete sequence
          Length = 200598

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 255   catctctctcaaactcgttgc 275
             |||||||||||||||||||||
Sbjct: 81878 catctctctcaaactcgttgc 81858
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>gb|AF280813.3| Homo sapiens chromosome 8 clone RP1-144M5 map 8p21-p11, complete sequence
          Length = 176902

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 192    tttctgctgccttctgactgt 212
              |||||||||||||||||||||
Sbjct: 175278 tttctgctgccttctgactgt 175298
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>gb|AC090097.5| Homo sapiens chromosome 8, clone RP11-369C6, complete sequence
          Length = 170973

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 192   tttctgctgccttctgactgt 212
             |||||||||||||||||||||
Sbjct: 77209 tttctgctgccttctgactgt 77229
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>gb|AC092472.3| Homo sapiens chromosome 8 clone RP1-96P7 map map 8p21-p11, complete
              sequence
          Length = 167794

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 192    tttctgctgccttctgactgt 212
              |||||||||||||||||||||
Sbjct: 131773 tttctgctgccttctgactgt 131793
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>gb|AC090274.6| Homo sapiens chromosome 8, clone RP1-144M5, complete sequence
          Length = 176889

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 192    tttctgctgccttctgactgt 212
              |||||||||||||||||||||
Sbjct: 175265 tttctgctgccttctgactgt 175285
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>gb|DP000048.1| Cercopithecus aethiops target 106 genomic scaffold
          Length = 583711

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 195   ctgctgccttctgactgtact 215
             |||||||||||||||||||||
Sbjct: 72382 ctgctgccttctgactgtact 72402
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>gb|AC155233.2| Mus musculus BAC clone RP24-381F23 from 12, complete sequence
          Length = 149905

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 468  atgtgtactgaatgatggctttgtg 492
            |||||||||||||| ||||||||||
Sbjct: 5735 atgtgtactgaatgctggctttgtg 5759
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>gb|AC124759.4| Mus musculus BAC clone RP23-132N7 from 1, complete sequence
          Length = 200104

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 255   catctctctcaaactcgttgc 275
             |||||||||||||||||||||
Sbjct: 36879 catctctctcaaactcgttgc 36859
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>gb|AC145545.2| Homo sapiens chromosome UNKNOWN clone RP11-1365M9, complete sequence
          Length = 184813

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 626   acttcaggcactaattccaa 645
             ||||||||||||||||||||
Sbjct: 41547 acttcaggcactaattccaa 41566
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>gb|BC052710.1| Mus musculus a disintegrin and metallopeptidase domain 9 (meltrin
           gamma), mRNA (cDNA clone IMAGE:6417133)
          Length = 3937

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 399 tctctaacagggacacagag 418
           ||||||||||||||||||||
Sbjct: 543 tctctaacagggacacagag 562
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>gb|BC047156.1| Mus musculus a disintegrin and metallopeptidase domain 9 (meltrin
           gamma), mRNA (cDNA clone MGC:54699 IMAGE:6488707),
           complete cds
          Length = 3881

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 399 tctctaacagggacacagag 418
           ||||||||||||||||||||
Sbjct: 549 tctctaacagggacacagag 568
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>gb|AC129778.5| Homo sapiens BAC clone RP11-1221G12 from UL, complete sequence
          Length = 236177

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 626   acttcaggcactaattccaa 645
             ||||||||||||||||||||
Sbjct: 58272 acttcaggcactaattccaa 58291
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>emb|AL845321.4| Human DNA sequence from clone RP11-236F9 on chromosome 9 Contains an
             aquaporin 7(AQP7) pseudogene, a novel gene, three novel
             pseudogenes, a pseudogene similar to part of BMS1-like,
             ribosome assembly protein (yeast)(BMS1L) and a CpG island,
             complete sequence
          Length = 158462

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 626   acttcaggcactaattccaa 645
             ||||||||||||||||||||
Sbjct: 97686 acttcaggcactaattccaa 97705
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>emb|AL591379.18| Human DNA sequence from clone RP11-381O7 on chromosome 9 Contains an
              aquaporin 7 (AQP7) pseudogene, a novel gene, three novel
              pseudogenes, a pseudogene similar to part of BMS1-like,
              ribosome assembly protein (yeast) (BMS1L), a pseudogene
              similar to part of tripartite motif-containing family
              protein and a CpG island, complete sequence
          Length = 194491

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 626    acttcaggcactaattccaa 645
              ||||||||||||||||||||
Sbjct: 101523 acttcaggcactaattccaa 101504
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>emb|AL445665.20| Human DNA sequence from clone RP11-574E24 on chromosome 9 Contains an
             aquaporin 7 (AQP7) pseudogene and a CpG island, complete
             sequence
          Length = 179371

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 626   acttcaggcactaattccaa 645
             ||||||||||||||||||||
Sbjct: 78704 acttcaggcactaattccaa 78685
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>gb|AC120541.8| Mus musculus, clone RP23-286L18, complete sequence
          Length = 171942

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 122   atcaagaactgtttttcaca 141
             ||||||||||||||||||||
Sbjct: 43711 atcaagaactgtttttcaca 43692
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>emb|AL079341.19|HSDJ319M7 Human DNA sequence from clone RP1-319M7 on chromosome 6p21.1-21.3
             Contains the 5' end of the gene for a novel protein
             (contains KIAA1880 and FLJ32945), a TRK-fused gene (TFG)
             pseudogene and a CpG island, complete sequence
          Length = 128216

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 21    ttaaacctagtatcttggct 40
             ||||||||||||||||||||
Sbjct: 49916 ttaaacctagtatcttggct 49897
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>ref|NM_007404.1| Mus musculus a disintegrin and metallopeptidase domain 9 (meltrin
           gamma) (Adam9), mRNA
          Length = 3850

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 399 tctctaacagggacacagag 418
           ||||||||||||||||||||
Sbjct: 543 tctctaacagggacacagag 562
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>gb|AC090195.5| Homo sapiens chromosome 8, clone RP11-366K18, complete sequence
          Length = 121721

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 87     catcactaaaatctctcaat 106
              ||||||||||||||||||||
Sbjct: 100270 catcactaaaatctctcaat 100289
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>dbj|AK148174.1| Mus musculus B16 F10Y cells cDNA, RIKEN full-length enriched
           library, clone:G370041A15 product:a disintegrin and
           metalloproteinase domain 9 (meltrin gamma), full insert
           sequence
          Length = 3849

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 399 tctctaacagggacacagag 418
           ||||||||||||||||||||
Sbjct: 557 tctctaacagggacacagag 576
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>dbj|AK155582.1| Mus musculus B6-derived CD11 +ve dendritic cells cDNA, RIKEN
           full-length enriched library, clone:F730001L13 product:a
           disintegrin and metalloproteinase domain 9 (meltrin
           gamma), full insert sequence
          Length = 3475

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 399 tctctaacagggacacagag 418
           ||||||||||||||||||||
Sbjct: 632 tctctaacagggacacagag 651
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>dbj|AK155672.1| Mus musculus B6-derived CD11 +ve dendritic cells cDNA, RIKEN
           full-length enriched library, clone:F730118G11 product:a
           disintegrin and metalloproteinase domain 9 (meltrin
           gamma), full insert sequence
          Length = 3854

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 399 tctctaacagggacacagag 418
           ||||||||||||||||||||
Sbjct: 564 tctctaacagggacacagag 583
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>gb|AC090196.5| Homo sapiens chromosome 8, clone RP11-766A10, complete sequence
          Length = 175708

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 87     catcactaaaatctctcaat 106
              ||||||||||||||||||||
Sbjct: 137523 catcactaaaatctctcaat 137504
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>dbj|AK161778.1| Mus musculus 13 days embryo forelimb cDNA, RIKEN full-length
           enriched library, clone:5930401G07 product:a disintegrin
           and metalloproteinase domain 9 (meltrin gamma), full
           insert sequence
          Length = 3343

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 399 tctctaacagggacacagag 418
           ||||||||||||||||||||
Sbjct: 595 tctctaacagggacacagag 614
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>ref|NM_001014772.1| Rattus norvegicus a disintegrin and metalloproteinase domain 9
           (meltrin gamma) (predicted) (Adam9_predicted), mRNA
          Length = 3095

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 399 tctctaacagggacacagag 418
           ||||||||||||||||||||
Sbjct: 557 tctctaacagggacacagag 576
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>gb|AY953138.1| Rattus norvegicus ADAM9 mRNA, complete cds
          Length = 3095

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 399 tctctaacagggacacagag 418
           ||||||||||||||||||||
Sbjct: 557 tctctaacagggacacagag 576
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>emb|AL845331.2| Human DNA sequence from clone RP11-407P15 on chromosome 9, complete
             sequence
          Length = 185111

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 626   acttcaggcactaattccaa 645
             ||||||||||||||||||||
Sbjct: 11018 acttcaggcactaattccaa 10999
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>gb|AC156553.17| Mus musculus chromosome 8, clone RP23-106I21, complete sequence
          Length = 211915

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 399    tctctaacagggacacagag 418
              ||||||||||||||||||||
Sbjct: 135804 tctctaacagggacacagag 135823
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>gb|AY449459.1| Oikopleura dioica clone BACOIKO003 5xk14, complete sequence
          Length = 158922

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 175    tttttctcacagcttctttt 194
              ||||||||||||||||||||
Sbjct: 116764 tttttctcacagcttctttt 116745
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>dbj|AK122188.1| Mus musculus mRNA for mKIAA0021 protein
          Length = 3945

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 399 tctctaacagggacacagag 418
           ||||||||||||||||||||
Sbjct: 654 tctctaacagggacacagag 673
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>gb|U41765.1|MMU41765 Mus musculus metalloprotease/disintegrin/cysteine rich protein
           precursor (MDC9) cDNA, complete cds
          Length = 3850

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 399 tctctaacagggacacagag 418
           ||||||||||||||||||||
Sbjct: 543 tctctaacagggacacagag 562
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>gb|AC142104.4| Mus musculus BAC clone RP24-313C11 from 8, complete sequence
          Length = 157626

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 242   agcatggacttgacatctct 261
             ||||||||||||||||||||
Sbjct: 72295 agcatggacttgacatctct 72314
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>dbj|AP006113.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT45A24, TM0197,
             complete sequence
          Length = 112846

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 468   atgtgtactgaatgatggct 487
             ||||||||||||||||||||
Sbjct: 57050 atgtgtactgaatgatggct 57031
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>dbj|AP004946.1| Lotus japonicus genomic DNA, chromosome , clone:LjT34D11, TM0119,
            complete sequence
          Length = 109743

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 468  atgtgtactgaatgatggct 487
            ||||||||||||||||||||
Sbjct: 5771 atgtgtactgaatgatggct 5790


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,690,808
Number of Sequences: 3902068
Number of extensions: 5690808
Number of successful extensions: 104617
Number of sequences better than 10.0: 74
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 104319
Number of HSP's gapped (non-prelim): 292
length of query: 672
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 649
effective length of database: 17,143,297,704
effective search space: 11126000209896
effective search space used: 11126000209896
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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