| Clone Name | rbags36c08 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK058672.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-018-H04, full insert sequence Length = 2175 Score = 139 bits (70), Expect = 7e-30 Identities = 181/218 (83%) Strand = Plus / Minus Query: 134 gtcatcttgctctggatttgcctgtgaacatgtacgaggaactccacataggaaaggcca 193 |||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||| Sbjct: 1731 gtcatcttgctctggatttgcctgtgcacatgcacaaggaactccacataggaaaggcca 1672 Query: 194 ccaggtgctttgtcctccaccaacagcgaacggaagaaatctccagacgggtcgcccttt 253 |||||||| |||||||| ||| | || ||||||||||| ||||| || || ||| || Sbjct: 1671 ccaggtgccttgtcctctgtcaaaaatgagcggaagaaatcaccagatggttcacccctt 1612 Query: 254 cggcacagtctcagtctcaagtaagagcatctctgtcgccttatttcattcacgacttca 313 | ||| || | || || || ||||| |||||||| || ||||||||||| | |||||| Sbjct: 1611 ctgcatagacgcaaccttaaataagaacatctctggcgtcttatttcattaattacttca 1552 Query: 314 ttcactttcctggacaatgcattatcaaattgctccaa 351 || || |||| |||| | |||| |||||||||||||| Sbjct: 1551 tttaccttccgtgacagttcattgtcaaattgctccaa 1514
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 127 bits (64), Expect = 3e-26 Identities = 97/108 (89%) Strand = Plus / Plus Query: 130 tcaggtcatcttgctctggatttgcctgtgaacatgtacgaggaactccacataggaaag 189 ||||||||||||||| ||||||||||| ||||||||||| |||||||| ||||| ||||| Sbjct: 13860418 tcaggtcatcttgctttggatttgcctatgaacatgtacaaggaactctacataagaaag 13860477 Query: 190 gccaccaggtgctttgtcctccaccaacagcgaacggaagaaatctcc 237 |||||||||||| ||||| || ||||| || || |||||||||||||| Sbjct: 13860478 gccaccaggtgccttgtcttcgaccaatagtgagcggaagaaatctcc 13860525 Score = 99.6 bits (50), Expect = 6e-18 Identities = 80/90 (88%) Strand = Plus / Plus Query: 269 ctcaagtaagagcatctctgtcgccttatttcattcacgacttcattcactttcctggac 328 ||||| || ||||||||||||||||||||||||||||| |||||||| ||||||||||| Sbjct: 13860722 ctcaaataggagcatctctgtcgccttatttcattcaccacttcatttactttcctggaa 13860781 Query: 329 aatgcattatcaaattgctccaatgccaac 358 | | | |||||| ||||||||||| ||||| Sbjct: 13860782 agttcgttatcatattgctccaataccaac 13860811
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 127 bits (64), Expect = 3e-26 Identities = 97/108 (89%) Strand = Plus / Plus Query: 130 tcaggtcatcttgctctggatttgcctgtgaacatgtacgaggaactccacataggaaag 189 ||||||||||||||| ||||||||||| ||||||||||| |||||||| ||||| ||||| Sbjct: 13814698 tcaggtcatcttgctttggatttgcctatgaacatgtacaaggaactctacataagaaag 13814757 Query: 190 gccaccaggtgctttgtcctccaccaacagcgaacggaagaaatctcc 237 |||||||||||| ||||| || ||||| || || |||||||||||||| Sbjct: 13814758 gccaccaggtgccttgtcttcgaccaatagtgagcggaagaaatctcc 13814805 Score = 99.6 bits (50), Expect = 6e-18 Identities = 80/90 (88%) Strand = Plus / Plus Query: 269 ctcaagtaagagcatctctgtcgccttatttcattcacgacttcattcactttcctggac 328 ||||| || ||||||||||||||||||||||||||||| |||||||| ||||||||||| Sbjct: 13815002 ctcaaataggagcatctctgtcgccttatttcattcaccacttcatttactttcctggaa 13815061 Query: 329 aatgcattatcaaattgctccaatgccaac 358 | | | |||||| ||||||||||| ||||| Sbjct: 13815062 agttcgttatcatattgctccaataccaac 13815091
>emb|BX667525.2|CNS09SC3 Oryza sativa chromosome 12, . Partial sequence from PAC P0185F07 of chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 50021 Score = 127 bits (64), Expect = 3e-26 Identities = 97/108 (89%) Strand = Plus / Plus Query: 130 tcaggtcatcttgctctggatttgcctgtgaacatgtacgaggaactccacataggaaag 189 ||||||||||||||| ||||||||||| ||||||||||| |||||||| ||||| ||||| Sbjct: 29221 tcaggtcatcttgctttggatttgcctatgaacatgtacaaggaactctacataagaaag 29280 Query: 190 gccaccaggtgctttgtcctccaccaacagcgaacggaagaaatctcc 237 |||||||||||| ||||| || ||||| || || |||||||||||||| Sbjct: 29281 gccaccaggtgccttgtcttcgaccaatagtgagcggaagaaatctcc 29328 Score = 99.6 bits (50), Expect = 6e-18 Identities = 80/90 (88%) Strand = Plus / Plus Query: 269 ctcaagtaagagcatctctgtcgccttatttcattcacgacttcattcactttcctggac 328 ||||| || ||||||||||||||||||||||||||||| |||||||| ||||||||||| Sbjct: 29525 ctcaaataggagcatctctgtcgccttatttcattcaccacttcatttactttcctggaa 29584 Query: 329 aatgcattatcaaattgctccaatgccaac 358 | | | |||||| ||||||||||| ||||| Sbjct: 29585 agttcgttatcatattgctccaataccaac 29614
>gb|AC114011.5| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0078f20, complete sequence Length = 151042 Score = 121 bits (61), Expect = 2e-24 Identities = 73/77 (94%) Strand = Plus / Minus Query: 134 gtcatcttgctctggatttgcctgtgaacatgtacgaggaactccacataggaaaggcca 193 |||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||| Sbjct: 87657 gtcatcttgctctggatttgcctgtgcacatgcacaaggaactccacataggaaaggcca 87598 Query: 194 ccaggtgctttgtcctc 210 |||||||| |||||||| Sbjct: 87597 ccaggtgccttgtcctc 87581 Score = 50.1 bits (25), Expect = 0.005 Identities = 64/77 (83%) Strand = Plus / Minus Query: 275 taagagcatctctgtcgccttatttcattcacgacttcattcactttcctggacaatgca 334 ||||| |||||||| || ||||||||||| | |||||||| || |||| |||| | || Sbjct: 87351 taagaacatctctggcgtcttatttcattaattacttcatttaccttccgtgacagttca 87292 Query: 335 ttatcaaattgctccaa 351 || |||||||||||||| Sbjct: 87291 ttgtcaaattgctccaa 87275
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 121 bits (61), Expect = 2e-24 Identities = 73/77 (94%) Strand = Plus / Minus Query: 134 gtcatcttgctctggatttgcctgtgaacatgtacgaggaactccacataggaaaggcca 193 |||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||| Sbjct: 16347222 gtcatcttgctctggatttgcctgtgcacatgcacaaggaactccacataggaaaggcca 16347163 Query: 194 ccaggtgctttgtcctc 210 |||||||| |||||||| Sbjct: 16347162 ccaggtgccttgtcctc 16347146 Score = 50.1 bits (25), Expect = 0.005 Identities = 64/77 (83%) Strand = Plus / Minus Query: 275 taagagcatctctgtcgccttatttcattcacgacttcattcactttcctggacaatgca 334 ||||| |||||||| || ||||||||||| | |||||||| || |||| |||| | || Sbjct: 16346916 taagaacatctctggcgtcttatttcattaattacttcatttaccttccgtgacagttca 16346857 Query: 335 ttatcaaattgctccaa 351 || |||||||||||||| Sbjct: 16346856 ttgtcaaattgctccaa 16346840
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 121 bits (61), Expect = 2e-24 Identities = 73/77 (94%) Strand = Plus / Minus Query: 134 gtcatcttgctctggatttgcctgtgaacatgtacgaggaactccacataggaaaggcca 193 |||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||| Sbjct: 16437201 gtcatcttgctctggatttgcctgtgcacatgcacaaggaactccacataggaaaggcca 16437142 Query: 194 ccaggtgctttgtcctc 210 |||||||| |||||||| Sbjct: 16437141 ccaggtgccttgtcctc 16437125 Score = 50.1 bits (25), Expect = 0.005 Identities = 64/77 (83%) Strand = Plus / Minus Query: 275 taagagcatctctgtcgccttatttcattcacgacttcattcactttcctggacaatgca 334 ||||| |||||||| || ||||||||||| | |||||||| || |||| |||| | || Sbjct: 16436895 taagaacatctctggcgtcttatttcattaattacttcatttaccttccgtgacagttca 16436836 Query: 335 ttatcaaattgctccaa 351 || |||||||||||||| Sbjct: 16436835 ttgtcaaattgctccaa 16436819
>gb|BT016818.1| Zea mays clone Contig651 mRNA sequence Length = 686 Score = 97.6 bits (49), Expect = 2e-17 Identities = 184/229 (80%) Strand = Plus / Plus Query: 130 tcaggtcatcttgctctggatttgcctgtgaacatgtacgaggaactccacataggaaag 189 ||||||||||||||| |||||||||||||| ||||| || |||||||| || ||||| | Sbjct: 377 tcaggtcatcttgctttggatttgcctgtggacatgcacaaggaactcgacgtaggagaa 436 Query: 190 gccaccaggtgctttgtcctccaccaacagcgaacggaagaaatctccagacgggtcgcc 249 | | ||||| || ||||||||||| || | || ||||| ||||| ||||| || || || Sbjct: 437 gacgccaggcgccttgtcctccactaaaaatgaccggaaaaaatcaccagatggttcacc 496 Query: 250 ctttcggcacagtctcagtctcaagtaagagcatctctgtcgccttatttcattcacgac 309 | ||| ||| |||| | |||||||| ||||| ||||| || ||||||||||| || || Sbjct: 497 ccttctgcattgtcttaacctcaagtatgagcacctctggcgtcttatttcatttacaac 556 Query: 310 ttcattcactttcctggacaatgcattatcaaattgctccaatgccaac 358 ||| || || ||||| || | | | || |||||||||||||| |||||| Sbjct: 557 ttcgttaaccttcctcgagagttcgttgtcaaattgctccaacgccaac 605
>gb|AY107397.1| Zea mays PCO076624 mRNA sequence Length = 2256 Score = 97.6 bits (49), Expect = 2e-17 Identities = 184/229 (80%) Strand = Plus / Minus Query: 130 tcaggtcatcttgctctggatttgcctgtgaacatgtacgaggaactccacataggaaag 189 ||||||||||||||| |||||||||||||| ||||| || |||||||| || ||||| | Sbjct: 1839 tcaggtcatcttgctttggatttgcctgtggacatgcacaaggaactcgacgtaggagaa 1780 Query: 190 gccaccaggtgctttgtcctccaccaacagcgaacggaagaaatctccagacgggtcgcc 249 | | ||||| || ||||||||||| || | || ||||| ||||| ||||| || || || Sbjct: 1779 gacgccaggcgccttgtcctccactaaaaatgaccggaaaaaatcaccagatggttcacc 1720 Query: 250 ctttcggcacagtctcagtctcaagtaagagcatctctgtcgccttatttcattcacgac 309 | ||| ||| |||| | |||||||| ||||| ||||| || ||||||||||| || || Sbjct: 1719 ccttctgcattgtcttaacctcaagtatgagcacctctggcgtcttatttcatttacaac 1660 Query: 310 ttcattcactttcctggacaatgcattatcaaattgctccaatgccaac 358 ||| || || ||||| || | | | || |||||||||||||| |||||| Sbjct: 1659 ttcgttaaccttcctcgagagttcgttgtcaaattgctccaacgccaac 1611
>gb|AY105862.1| Zea mays PCO076623 mRNA sequence Length = 924 Score = 93.7 bits (47), Expect = 4e-16 Identities = 149/183 (81%) Strand = Plus / Minus Query: 130 tcaggtcatcttgctctggatttgcctgtgaacatgtacgaggaactccacataggaaag 189 ||||||||||||||| ||||| |||||||| ||||| ||||| |||||| | ||||| | Sbjct: 830 tcaggtcatcttgctttggatctgcctgtggacatgcacgagaaactcctcgtaggagaa 771 Query: 190 gccaccaggtgctttgtcctccaccaacagcgaacggaagaaatctccagacgggtcgcc 249 | | |||||||| |||||||| | | | || ||||| ||||||||||| || ||||| Sbjct: 770 gacgccaggtgccttgtcctctattagaaatgaccggaaaaaatctccagatggttcgcc 711 Query: 250 ctttcggcacagtctcagtctcaagtaagagcatctctgtcgccttatttcattcacgac 309 | ||| ||| ||||||| |||||||| ||||| ||||| ||||| |||||||| || || Sbjct: 710 ccttctgcatagtctcaacctcaagtatgagcacctctggcgcctaatttcatttacaac 651 Query: 310 ttc 312 ||| Sbjct: 650 ttc 648
>gb|BT016644.1| Zea mays clone Contig477 mRNA sequence Length = 1961 Score = 89.7 bits (45), Expect = 6e-15 Identities = 183/229 (79%) Strand = Plus / Minus Query: 130 tcaggtcatcttgctctggatttgcctgtgaacatgtacgaggaactccacataggaaag 189 ||||||||||||||| |||||||||||||| ||||| || |||||||| || ||||| | Sbjct: 1302 tcaggtcatcttgctttggatttgcctgtggacatgcacaaggaactcgacgtaggagaa 1243 Query: 190 gccaccaggtgctttgtcctccaccaacagcgaacggaagaaatctccagacgggtcgcc 249 | | ||||| || ||||||||||| || | || ||||| ||||| ||||| || || || Sbjct: 1242 gacgccaggcgccttgtcctccactaaaaatgaccggaaaaaatcaccagatggttcacc 1183 Query: 250 ctttcggcacagtctcagtctcaagtaagagcatctctgtcgccttatttcattcacgac 309 | ||| ||| |||| | |||||||| ||||| ||||| || ||||||||||| || || Sbjct: 1182 ccttctgcattgtcttaacctcaagtatgagcacctctggcgtcttatttcatttacaac 1123 Query: 310 ttcattcactttcctggacaatgcattatcaaattgctccaatgccaac 358 || || || ||||| || | | | || |||||||||||||| |||||| Sbjct: 1122 ttggttaaccttcctcgagagttcgttgtcaaattgctccaacgccaac 1074
>gb|BT016902.1| Zea mays clone Contig735 mRNA sequence Length = 987 Score = 85.7 bits (43), Expect = 9e-14 Identities = 148/183 (80%) Strand = Plus / Plus Query: 130 tcaggtcatcttgctctggatttgcctgtgaacatgtacgaggaactccacataggaaag 189 ||||||||||||||| ||||| |||||||| ||||| ||||| |||||| | ||||| | Sbjct: 438 tcaggtcatcttgctttggatctgcctgtggacatgcacgagaaactcctcgtaggagaa 497 Query: 190 gccaccaggtgctttgtcctccaccaacagcgaacggaagaaatctccagacgggtcgcc 249 | | |||||||| |||||||| | | | || ||||| ||||||||||| || ||||| Sbjct: 498 gacgccaggtgccttgtcctctattagaaatgaccggaaaaaatctccagatggttcgcc 557 Query: 250 ctttcggcacagtctcagtctcaagtaagagcatctctgtcgccttatttcattcacgac 309 | ||| ||| ||||| | |||||||| ||||| ||||| ||||| |||||||| || || Sbjct: 558 ccttctgcatagtcttaacctcaagtatgagcacctctggcgcctaatttcatttacaac 617 Query: 310 ttc 312 ||| Sbjct: 618 ttc 620
>ref|NM_102680.2| Arabidopsis thaliana AML5 (ARABIDOPSIS MEI2-LIKE PROTEIN 5); RNA binding / nucleic acid binding AT1G29400 (AML5) transcript variant AT1G29400.1 mRNA, complete cds Length = 2880 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 94 aatctctaccaaccaaaata 113 |||||||||||||||||||| Sbjct: 34 aatctctaccaaccaaaata 15
>ref|NM_179396.1| Arabidopsis thaliana AML5 (ARABIDOPSIS MEI2-LIKE PROTEIN 5); RNA binding / nucleic acid binding AT1G29400 (AML5) transcript variant AT1G29400.2 mRNA, complete cds Length = 2921 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 94 aatctctaccaaccaaaata 113 |||||||||||||||||||| Sbjct: 78 aatctctaccaaccaaaata 59
>emb|CR388121.11| Zebrafish DNA sequence from clone DKEY-161F5 in linkage group 15, complete sequence Length = 179357 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 122 atgaagcttcaggtcatcttgctc 145 |||||||||||| ||||||||||| Sbjct: 135763 atgaagcttcagttcatcttgctc 135786
>gb|AC110823.5| Mus musculus BAC clone RP24-366C12 from chromosome 7, complete sequence Length = 141116 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 43 aaagaaaaacggtccattta 62 |||||||||||||||||||| Sbjct: 42222 aaagaaaaacggtccattta 42203
>gb|AC125223.3| Mus musculus BAC clone RP23-31C10 from 13, complete sequence Length = 221903 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 106 ccaaaatatcacaccaatga 125 |||||||||||||||||||| Sbjct: 103131 ccaaaatatcacaccaatga 103112
>gb|AY070368.1| Arabidopsis thaliana putative RNA-binding protein MEI2 (At1g29400) mRNA, complete cds Length = 2927 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 94 aatctctaccaaccaaaata 113 |||||||||||||||||||| Sbjct: 73 aatctctaccaaccaaaata 54
>emb|AL672240.13| Mouse DNA sequence from clone RP23-27I16 on chromosome 11, complete sequence Length = 224603 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 298 ttcattcacgacttcattca 317 |||||||||||||||||||| Sbjct: 105313 ttcattcacgacttcattca 105294
>gb|AY062613.1| Arabidopsis thaliana RNA-binding protein MEI2, putative (F15D2.30) mRNA, complete cds Length = 2856 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 94 aatctctaccaaccaaaata 113 |||||||||||||||||||| Sbjct: 73 aatctctaccaaccaaaata 54
>dbj|AB179423.1| Macaca fascicularis testis cDNA clone: QtsA-19777, similar to human v-raf murine sarcoma viral oncogene homolog B1 (BRAF), mRNA, RefSeq: NM_004333.2 Length = 2849 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 193 accaggtgctttgtcctcca 212 |||||||||||||||||||| Sbjct: 2314 accaggtgctttgtcctcca 2333
>gb|AC068667.6|AC068667 Arabidopsis thaliana chromosome 1 BAC F15D2 genomic sequence, complete sequence Length = 130653 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 94 aatctctaccaaccaaaata 113 |||||||||||||||||||| Sbjct: 36872 aatctctaccaaccaaaata 36891
>gb|AC150312.2| Mus musculus BAC clone RP23-336M16 from 7, complete sequence Length = 207429 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 aaagaaaaacggtccattta 62 |||||||||||||||||||| Sbjct: 197196 aaagaaaaacggtccattta 197215
>gb|AC148975.3| Mus musculus BAC clone RP23-398E10 from 7, complete sequence Length = 209924 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 aaagaaaaacggtccattta 62 |||||||||||||||||||| Sbjct: 31014 aaagaaaaacggtccattta 31033 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,337,520 Number of Sequences: 3902068 Number of extensions: 3337520 Number of successful extensions: 66617 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 24 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 66522 Number of HSP's gapped (non-prelim): 91 length of query: 374 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 352 effective length of database: 17,147,199,772 effective search space: 6035814319744 effective search space used: 6035814319744 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)