ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags35n03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_185159.1| Oryza sativa (japonica cultivar-group), mRNA 258 2e-65
2dbj|AK103844.1| Oryza sativa (japonica cultivar-group) cDNA clon... 258 2e-65
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 127 5e-26
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 127 5e-26
5gb|AC093018.4| Oryza sativa chromosome 3 BAC OSJNBb0081B07 genom... 127 5e-26
6ref|NM_125315.3| Arabidopsis thaliana carbohydrate transporter/ ... 72 3e-09
7gb|BT020338.1| Arabidopsis thaliana At5g59250 gene, complete cds 72 3e-09
8gb|BT015354.1| Arabidopsis thaliana At5g59250 gene, complete cds 72 3e-09
9emb|BX830948.1|CNS09YR1 Arabidopsis thaliana Full-length cDNA Co... 72 3e-09
10ref|NM_180504.2| Arabidopsis thaliana carbohydrate transporter/ ... 46 0.15
11ref|NM_180505.2| Arabidopsis thaliana carbohydrate transporter/ ... 46 0.15
12gb|BT015128.1| Arabidopsis thaliana At5g17010 gene, complete cds 46 0.15
13dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.15
14emb|BX832592.1|CNS0A15S Arabidopsis thaliana Full-length cDNA Co... 46 0.15
15emb|BX830790.1|CNS0A0TI Arabidopsis thaliana Full-length cDNA Co... 46 0.15
16dbj|AP001129.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.15
17emb|CR555308.1| Azoarcus sp. EbN1 plasmid 2 44 0.57
18emb|CR555306.1| Azoarcus sp. EbN1 complete genome 44 0.57
19emb|BX511069.14| Zebrafish DNA sequence from clone CH211-207I1 i... 44 0.57
20dbj|AB016890.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 42 2.3
21emb|AL929303.8| Mouse DNA sequence from clone RP23-240M2 on chro... 42 2.3
22ref|NM_001006650.1| Canis familiaris polycystic kidney disease 1... 40 9.0
23gb|BT018712.1| Zea mays clone EL01N0516F06.d mRNA sequence 40 9.0
24gb|AF041004.1|HSPPLG6 Homo sapiens periplakin (PPL) gene, exons ... 40 9.0
25gb|AE017344.1| Cryptococcus neoformans var. neoformans JEC21 chr... 40 9.0
26gb|AY395569.1| Saccharomyces douglasii putative RNA polymerase I... 40 9.0
27gb|AC163269.3| Mus musculus chromosome 15, clone RP24-276M6, com... 40 9.0
28gb|AC161884.5| Mus musculus BAC clone RP23-77K23 from chromosome... 40 9.0
29ref|XM_850511.1| PREDICTED: Canis familiaris hypothetical protei... 40 9.0
30gb|AY102170.1| Canis familiaris polycystin 1 (PKD1) mRNA, comple... 40 9.0
31emb|AL160399.13| Human DNA sequence from clone RP11-161N21 on ch... 40 9.0
32emb|AL138898.19| Human DNA sequence from clone RP11-401F24 on ch... 40 9.0
33gb|AC006051.1| Homo sapiens 12p13.3 PAC RPCI5-1103G8 (Roswell Pa... 40 9.0
34gb|AF483210.1| Canis familiaris polycystin-1 (PKD1) gene, partia... 40 9.0
35dbj|AP003603.1| Nostoc sp. PCC 7120 plasmid pCC7120gamma DNA, co... 40 9.0
36gb|AC161052.2| Mus musculus BAC clone RP23-393J15 from chromosom... 40 9.0
37gb|AC155265.2| Mus musculus BAC clone RP23-253O24 from chromosom... 40 9.0
38ref|XM_395247.2| PREDICTED: Apis mellifera similar to ENSANGP000... 40 9.0
39gb|AC027687.7| Homo sapiens chromosome 16 clone RP11-61L4, compl... 40 9.0
40gb|AC158655.4| Mus musculus BAC RP23-406J21 (Roswell Park Cance... 40 9.0
41gb|DQ332116.1| Synthetic construct Saccharomyces cerevisiae clon... 40 9.0
42gb|AC115699.9| Mus musculus chromosome 15, clone RP24-247B18, co... 40 9.0
43emb|CT033785.8| Mouse DNA sequence from clone RP23-445G17 on chr... 40 9.0
44gb|U25841.1|YSCP9677 Saccharomyces cerevisiae chromosome XVI cos... 40 9.0
45dbj|AP006535.1| Lotus japonicus genomic DNA, chromosome 2, clone... 40 9.0
46dbj|AB025576.1| Oryzias latipes Orla C3-2 mRNA, complete cds 40 9.0
47dbj|AB025575.1| Oryzias latipes Orla C3-1 mRNA, complete cds 40 9.0 
>ref|NM_185159.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1724

 Score =  258 bits (130), Expect = 2e-65
 Identities = 295/350 (84%)
 Strand = Plus / Minus

                                                                        
Query: 269  cttcaggatcttggattcgatctcctccaggctcagccctttggtctctgggacgttgag 328
            |||||||| ||||||||||||||||||||   | || ||||| |||||||| || || ||
Sbjct: 1575 cttcaggagcttggattcgatctcctccaatgtaagtcctttagtctctggaacttttag 1516

                                                                        
Query: 329  gatgacaaacaagagggcgagcagcgatatggctgcgaaaagaaggaagacgttggccgg 388
            |||||||||||  |||| ||||| |||||||||| | || |||||||| |  ||||| ||
Sbjct: 1515 gatgacaaacacaagggagagcaacgatatggctccaaatagaaggaaaatattggctgg 1456

                                                                        
Query: 389  tccgaggtatccctgcaagggtgagaatgcgaatgtcactaacgcattcgatccaaaatt 448
            ||| ||| || ||||||||||||| || || |||||||| |  ||||| || || |||||
Sbjct: 1455 tccaaggaattcctgcaagggtgaaaaggcaaatgtcaccagtgcatttgagccgaaatt 1396

                                                                        
Query: 449  tgtgagtaccgcgaggctgattccgcgtccccttgttcggagtgggaagatctcagagac 508
            ||| ||||| || |||||||| || ||||| |||||||||||||||||||||||||| ||
Sbjct: 1395 tgtaagtactgcaaggctgatcccacgtcctcttgttcggagtgggaagatctcagaaac 1336

                                                                        
Query: 509  cattagccagcttatcggaccaaacgaaagctggtaacagccaacataaagaagtaaagc 568
            ||||||||| ||||| ||||||||||| | ||||||| | || ||||| |||||||||||
Sbjct: 1335 cattagccaacttattggaccaaacgatacctggtaagaaccgacatacagaagtaaagc 1276

                                                              
Query: 569  accaacagcaacaaaagggaagccactgagagccttgtagtaagctgcta 618
            ||||||||| |||||||||||||   | |||  |||||||||||||||||
Sbjct: 1275 accaacagcgacaaaagggaagctgttcagaatcttgtagtaagctgcta 1226
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>dbj|AK103844.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033148J17, full
           insert sequence
          Length = 1118

 Score =  258 bits (130), Expect = 2e-65
 Identities = 295/350 (84%)
 Strand = Plus / Minus

                                                                       
Query: 269 cttcaggatcttggattcgatctcctccaggctcagccctttggtctctgggacgttgag 328
           |||||||| ||||||||||||||||||||   | || ||||| |||||||| || || ||
Sbjct: 909 cttcaggagcttggattcgatctcctccaatgtaagtcctttagtctctggaacttttag 850

                                                                       
Query: 329 gatgacaaacaagagggcgagcagcgatatggctgcgaaaagaaggaagacgttggccgg 388
           |||||||||||  |||| ||||| |||||||||| | || |||||||| |  ||||| ||
Sbjct: 849 gatgacaaacacaagggagagcaacgatatggctccaaatagaaggaaaatattggctgg 790

                                                                       
Query: 389 tccgaggtatccctgcaagggtgagaatgcgaatgtcactaacgcattcgatccaaaatt 448
           ||| ||| || ||||||||||||| || || |||||||| |  ||||| || || |||||
Sbjct: 789 tccaaggaattcctgcaagggtgaaaaggcaaatgtcaccagtgcatttgagccgaaatt 730

                                                                       
Query: 449 tgtgagtaccgcgaggctgattccgcgtccccttgttcggagtgggaagatctcagagac 508
           ||| ||||| || |||||||| || ||||| |||||||||||||||||||||||||| ||
Sbjct: 729 tgtaagtactgcaaggctgatcccacgtcctcttgttcggagtgggaagatctcagaaac 670

                                                                       
Query: 509 cattagccagcttatcggaccaaacgaaagctggtaacagccaacataaagaagtaaagc 568
           ||||||||| ||||| ||||||||||| | ||||||| | || ||||| |||||||||||
Sbjct: 669 cattagccaacttattggaccaaacgatacctggtaagaaccgacatacagaagtaaagc 610

                                                             
Query: 569 accaacagcaacaaaagggaagccactgagagccttgtagtaagctgcta 618
           ||||||||| |||||||||||||   | |||  |||||||||||||||||
Sbjct: 609 accaacagcgacaaaagggaagctgttcagaatcttgtagtaagctgcta 560
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  127 bits (64), Expect = 5e-26
 Identities = 118/136 (86%)
 Strand = Plus / Plus

                                                                            
Query: 400      cctgcaagggtgagaatgcgaatgtcactaacgcattcgatccaaaatttgtgagtaccg 459
                ||||||||||||| || || |||||||| |  ||||| || || |||||||| ||||| |
Sbjct: 34251335 cctgcaagggtgaaaaggcaaatgtcaccagtgcatttgagccgaaatttgtaagtactg 34251394

                                                                            
Query: 460      cgaggctgattccgcgtccccttgttcggagtgggaagatctcagagaccattagccagc 519
                | |||||||| || ||||| |||||||||||||||||||||||||| ||||||||||| |
Sbjct: 34251395 caaggctgatcccacgtcctcttgttcggagtgggaagatctcagaaaccattagccaac 34251454

                                
Query: 520      ttatcggaccaaacga 535
                |||| |||||||||||
Sbjct: 34251455 ttattggaccaaacga 34251470



 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 113/137 (82%)
 Strand = Plus / Plus

                                                                            
Query: 269      cttcaggatcttggattcgatctcctccaggctcagccctttggtctctgggacgttgag 328
                |||||||| ||||||||||||||||||||   | || ||||| |||||||| || || ||
Sbjct: 34250972 cttcaggagcttggattcgatctcctccaatgtaagtcctttagtctctggaacttttag 34251031

                                                                            
Query: 329      gatgacaaacaagagggcgagcagcgatatggctgcgaaaagaaggaagacgttggccgg 388
                |||||||||||  |||| ||||| |||||||||| | || |||||||| |  ||||| ||
Sbjct: 34251032 gatgacaaacacaagggagagcaacgatatggctccaaatagaaggaaaatattggctgg 34251091

                                 
Query: 389      tccgaggtatccctgca 405
                ||| ||| || ||||||
Sbjct: 34251092 tccaaggaattcctgca 34251108



 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 69/80 (86%)
 Strand = Plus / Plus

                                                                            
Query: 539      ctggtaacagccaacataaagaagtaaagcaccaacagcaacaaaagggaagccactgag 598
                ||||||| | || ||||| |||||||||||||||||||| |||||||||||||   | ||
Sbjct: 34251547 ctggtaagaaccgacatacagaagtaaagcaccaacagcgacaaaagggaagctgttcag 34251606

                                    
Query: 599      agccttgtagtaagctgcta 618
                |  |||||||||||||||||
Sbjct: 34251607 aatcttgtagtaagctgcta 34251626
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  127 bits (64), Expect = 5e-26
 Identities = 118/136 (86%)
 Strand = Plus / Plus

                                                                            
Query: 400      cctgcaagggtgagaatgcgaatgtcactaacgcattcgatccaaaatttgtgagtaccg 459
                ||||||||||||| || || |||||||| |  ||||| || || |||||||| ||||| |
Sbjct: 34341807 cctgcaagggtgaaaaggcaaatgtcaccagtgcatttgagccgaaatttgtaagtactg 34341866

                                                                            
Query: 460      cgaggctgattccgcgtccccttgttcggagtgggaagatctcagagaccattagccagc 519
                | |||||||| || ||||| |||||||||||||||||||||||||| ||||||||||| |
Sbjct: 34341867 caaggctgatcccacgtcctcttgttcggagtgggaagatctcagaaaccattagccaac 34341926

                                
Query: 520      ttatcggaccaaacga 535
                |||| |||||||||||
Sbjct: 34341927 ttattggaccaaacga 34341942



 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 113/137 (82%)
 Strand = Plus / Plus

                                                                            
Query: 269      cttcaggatcttggattcgatctcctccaggctcagccctttggtctctgggacgttgag 328
                |||||||| ||||||||||||||||||||   | || ||||| |||||||| || || ||
Sbjct: 34341444 cttcaggagcttggattcgatctcctccaatgtaagtcctttagtctctggaacttttag 34341503

                                                                            
Query: 329      gatgacaaacaagagggcgagcagcgatatggctgcgaaaagaaggaagacgttggccgg 388
                |||||||||||  |||| ||||| |||||||||| | || |||||||| |  ||||| ||
Sbjct: 34341504 gatgacaaacacaagggagagcaacgatatggctccaaatagaaggaaaatattggctgg 34341563

                                 
Query: 389      tccgaggtatccctgca 405
                ||| ||| || ||||||
Sbjct: 34341564 tccaaggaattcctgca 34341580



 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 69/80 (86%)
 Strand = Plus / Plus

                                                                            
Query: 539      ctggtaacagccaacataaagaagtaaagcaccaacagcaacaaaagggaagccactgag 598
                ||||||| | || ||||| |||||||||||||||||||| |||||||||||||   | ||
Sbjct: 34342019 ctggtaagaaccgacatacagaagtaaagcaccaacagcgacaaaagggaagctgttcag 34342078

                                    
Query: 599      agccttgtagtaagctgcta 618
                |  |||||||||||||||||
Sbjct: 34342079 aatcttgtagtaagctgcta 34342098
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>gb|AC093018.4| Oryza sativa chromosome 3 BAC OSJNBb0081B07 genomic sequence, complete
             sequence
          Length = 143205

 Score =  127 bits (64), Expect = 5e-26
 Identities = 118/136 (86%)
 Strand = Plus / Minus

                                                                         
Query: 400   cctgcaagggtgagaatgcgaatgtcactaacgcattcgatccaaaatttgtgagtaccg 459
             ||||||||||||| || || |||||||| |  ||||| || || |||||||| ||||| |
Sbjct: 83663 cctgcaagggtgaaaaggcaaatgtcaccagtgcatttgagccgaaatttgtaagtactg 83604

                                                                         
Query: 460   cgaggctgattccgcgtccccttgttcggagtgggaagatctcagagaccattagccagc 519
             | |||||||| || ||||| |||||||||||||||||||||||||| ||||||||||| |
Sbjct: 83603 caaggctgatcccacgtcctcttgttcggagtgggaagatctcagaaaccattagccaac 83544

                             
Query: 520   ttatcggaccaaacga 535
             |||| |||||||||||
Sbjct: 83543 ttattggaccaaacga 83528



 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 113/137 (82%)
 Strand = Plus / Minus

                                                                         
Query: 269   cttcaggatcttggattcgatctcctccaggctcagccctttggtctctgggacgttgag 328
             |||||||| ||||||||||||||||||||   | || ||||| |||||||| || || ||
Sbjct: 84026 cttcaggagcttggattcgatctcctccaatgtaagtcctttagtctctggaacttttag 83967

                                                                         
Query: 329   gatgacaaacaagagggcgagcagcgatatggctgcgaaaagaaggaagacgttggccgg 388
             |||||||||||  |||| ||||| |||||||||| | || |||||||| |  ||||| ||
Sbjct: 83966 gatgacaaacacaagggagagcaacgatatggctccaaatagaaggaaaatattggctgg 83907

                              
Query: 389   tccgaggtatccctgca 405
             ||| ||| || ||||||
Sbjct: 83906 tccaaggaattcctgca 83890



 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 69/80 (86%)
 Strand = Plus / Minus

                                                                         
Query: 539   ctggtaacagccaacataaagaagtaaagcaccaacagcaacaaaagggaagccactgag 598
             ||||||| | || ||||| |||||||||||||||||||| |||||||||||||   | ||
Sbjct: 83451 ctggtaagaaccgacatacagaagtaaagcaccaacagcgacaaaagggaagctgttcag 83392

                                 
Query: 599   agccttgtagtaagctgcta 618
             |  |||||||||||||||||
Sbjct: 83391 aatcttgtagtaagctgcta 83372
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>ref|NM_125315.3| Arabidopsis thaliana carbohydrate transporter/ sugar porter AT5G59250
            mRNA, complete cds
          Length = 1865

 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 111/136 (81%)
 Strand = Plus / Minus

                                                                        
Query: 480  cttgttcggagtgggaagatctcagagaccattagccagcttatcggaccaaacgaaagc 539
            ||||| ||||| ||||| ||||| || |||||||||||||| || || ||||| || | |
Sbjct: 1528 cttgtgcggagcgggaaaatctctgacaccattagccagctgatgggtccaaatgagatc 1469

                                                                        
Query: 540  tggtaacagccaacataaagaagtaaagcaccaacagcaacaaaagggaagccactgaga 599
            |||||||| |||||||| ||||| |  ||||||||||| ||||  || ||||| | ||||
Sbjct: 1468 tggtaacaaccaacatagagaagcagtgcaccaacagcgacaaggggaaagcctccgaga 1409

                            
Query: 600  gccttgtagtaagctg 615
              ||||||||| ||||
Sbjct: 1408 aacttgtagtatgctg 1393
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>gb|BT020338.1| Arabidopsis thaliana At5g59250 gene, complete cds
          Length = 1677

 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 111/136 (81%)
 Strand = Plus / Minus

                                                                        
Query: 480  cttgttcggagtgggaagatctcagagaccattagccagcttatcggaccaaacgaaagc 539
            ||||| ||||| ||||| ||||| || |||||||||||||| || || ||||| || | |
Sbjct: 1463 cttgtgcggagcgggaaaatctctgacaccattagccagctgatgggtccaaatgagatc 1404

                                                                        
Query: 540  tggtaacagccaacataaagaagtaaagcaccaacagcaacaaaagggaagccactgaga 599
            |||||||| |||||||| ||||| |  ||||||||||| ||||  || ||||| | ||||
Sbjct: 1403 tggtaacaaccaacatagagaagcagtgcaccaacagcgacaaggggaaagcctccgaga 1344

                            
Query: 600  gccttgtagtaagctg 615
              ||||||||| ||||
Sbjct: 1343 aacttgtagtatgctg 1328
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>gb|BT015354.1| Arabidopsis thaliana At5g59250 gene, complete cds
          Length = 1799

 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 111/136 (81%)
 Strand = Plus / Minus

                                                                        
Query: 480  cttgttcggagtgggaagatctcagagaccattagccagcttatcggaccaaacgaaagc 539
            ||||| ||||| ||||| ||||| || |||||||||||||| || || ||||| || | |
Sbjct: 1480 cttgtgcggagcgggaaaatctctgacaccattagccagctgatgggtccaaatgagatc 1421

                                                                        
Query: 540  tggtaacagccaacataaagaagtaaagcaccaacagcaacaaaagggaagccactgaga 599
            |||||||| |||||||| ||||| |  ||||||||||| ||||  || ||||| | ||||
Sbjct: 1420 tggtaacaaccaacatagagaagcagtgcaccaacagcgacaaggggaaagcctccgaga 1361

                            
Query: 600  gccttgtagtaagctg 615
              ||||||||| ||||
Sbjct: 1360 aacttgtagtatgctg 1345
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>emb|BX830948.1|CNS09YR1 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS40ZH06 of Adult vegetative tissue of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1823

 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 111/136 (81%)
 Strand = Plus / Minus

                                                                        
Query: 480  cttgttcggagtgggaagatctcagagaccattagccagcttatcggaccaaacgaaagc 539
            ||||| ||||| ||||| ||||| || |||||||||||||| || || ||||| || | |
Sbjct: 1498 cttgtgcggagcgggaaaatctctgacaccattagccagctgatgggtccaaatgagatc 1439

                                                                        
Query: 540  tggtaacagccaacataaagaagtaaagcaccaacagcaacaaaagggaagccactgaga 599
            |||||||| |||||||| ||||| |  ||||||||||| ||||  || ||||| | ||||
Sbjct: 1438 tggtaacaaccaacatagagaagcagtgcaccaacagcgacaaggggaaagcctccgaga 1379

                            
Query: 600  gccttgtagtaagctg 615
              ||||||||| ||||
Sbjct: 1378 aacttgtagtatgctg 1363
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>ref|NM_180504.2| Arabidopsis thaliana carbohydrate transporter/ sugar porter AT5G17010
            transcript variant AT5G17010.1 mRNA, complete cds
          Length = 2031

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 525  ggaccaaacgaaagctggtaacagccaacataaag 559
            |||||||| || |||||||||||||| ||||||||
Sbjct: 1361 ggaccaaaagatagctggtaacagcccacataaag 1327
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>ref|NM_180505.2| Arabidopsis thaliana carbohydrate transporter/ sugar porter AT5G17010
            transcript variant AT5G17010.3 mRNA, complete cds
          Length = 2035

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 525  ggaccaaacgaaagctggtaacagccaacataaag 559
            |||||||| || |||||||||||||| ||||||||
Sbjct: 1370 ggaccaaaagatagctggtaacagcccacataaag 1336
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>gb|BT015128.1| Arabidopsis thaliana At5g17010 gene, complete cds
          Length = 1707

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 525  ggaccaaacgaaagctggtaacagccaacataaag 559
            |||||||| || |||||||||||||| ||||||||
Sbjct: 1272 ggaccaaaagatagctggtaacagcccacataaag 1238
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6,
              complete sequence
          Length = 30731886

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                         
Query: 558    agaagtaaagcaccaacagcaacaaaa 584
              ||||||| |||||||||||||||||||
Sbjct: 371005 agaagtagagcaccaacagcaacaaaa 371031
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>emb|BX832592.1|CNS0A15S Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH82ZG08 of Hormone Treated Callus of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1792

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 525  ggaccaaacgaaagctggtaacagccaacataaag 559
            |||||||| || |||||||||||||| ||||||||
Sbjct: 1314 ggaccaaaagatagctggtaacagcccacataaag 1280
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>emb|BX830790.1|CNS0A0TI Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS23ZD07 of Adult vegetative tissue of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1630

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 525  ggaccaaacgaaagctggtaacagccaacataaag 559
            |||||||| || |||||||||||||| ||||||||
Sbjct: 1184 ggaccaaaagatagctggtaacagcccacataaag 1150
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>dbj|AP001129.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0644B06
          Length = 194509

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 558   agaagtaaagcaccaacagcaacaaaa 584
             ||||||| |||||||||||||||||||
Sbjct: 80958 agaagtagagcaccaacagcaacaaaa 80984
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>emb|CR555308.1| Azoarcus sp. EbN1 plasmid 2
          Length = 223670

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 285    tcgatctcctccaggctcagcc 306
              ||||||||||||||||||||||
Sbjct: 130809 tcgatctcctccaggctcagcc 130830



 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 285    tcgatctcctccaggctcagcc 306
              ||||||||||||||||||||||
Sbjct: 108220 tcgatctcctccaggctcagcc 108199
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>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 285    tcgatctcctccaggctcagcc 306
              ||||||||||||||||||||||
Sbjct: 282292 tcgatctcctccaggctcagcc 282313
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>emb|BX511069.14| Zebrafish DNA sequence from clone CH211-207I1 in linkage group 20
            Contains the 3' end of the gene for a novel protein
            similar to vertebrate dishevelled associated activator of
            morphogenesis 1 (DAAM1) and three novel genes, complete
            sequence
          Length = 89721

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 44   aaaatgacagctgattcagaaa 65
            ||||||||||||||||||||||
Sbjct: 2286 aaaatgacagctgattcagaaa 2265
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>dbj|AB016890.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MNC17
          Length = 75803

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                      
Query: 480   cttgttcggagtgggaagatctcagagaccattagccagct 520
             ||||| ||||| ||||| ||||| || ||||||||||||||
Sbjct: 45836 cttgtgcggagcgggaaaatctctgacaccattagccagct 45796



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 63/77 (81%)
 Strand = Plus / Minus

                                                                         
Query: 539   ctggtaacagccaacataaagaagtaaagcaccaacagcaacaaaagggaagccactgag 598
             ||||||||| |||||||| ||||| |  ||||||||||| ||||  || ||||| | |||
Sbjct: 45701 ctggtaacaaccaacatagagaagcagtgcaccaacagcgacaaggggaaagcctccgag 45642

                              
Query: 599   agccttgtagtaagctg 615
             |  ||||||||| ||||
Sbjct: 45641 aaacttgtagtatgctg 45625
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>emb|AL929303.8| Mouse DNA sequence from clone RP23-240M2 on chromosome 4, complete
             sequence
          Length = 111445

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 332   gacaaacaagagggcgagcag 352
             |||||||||||||||||||||
Sbjct: 84677 gacaaacaagagggcgagcag 84657
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>ref|NM_001006650.1| Canis familiaris polycystic kidney disease 1 (autosomal dominant)
             (PKD1), mRNA
          Length = 13947

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 289   tctcctccaggctcagccct 308
             ||||||||||||||||||||
Sbjct: 11519 tctcctccaggctcagccct 11500
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>gb|BT018712.1| Zea mays clone EL01N0516F06.d mRNA sequence
          Length = 1922

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 245 atcagctggcatttccattc 264
           ||||||||||||||||||||
Sbjct: 626 atcagctggcatttccattc 645
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>gb|AF041004.1|HSPPLG6 Homo sapiens periplakin (PPL) gene, exons 10 through 22 and complete
            cds
          Length = 15932

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 579  acaaaagggaagccactgagagcc 602
            |||| |||||||||||||||||||
Sbjct: 8828 acaacagggaagccactgagagcc 8851
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>gb|AE017344.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 4, complete
               sequence
          Length = 1783081

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 244     tatcagctggcatttccatt 263
               ||||||||||||||||||||
Sbjct: 1146483 tatcagctggcatttccatt 1146502
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>gb|AY395569.1| Saccharomyces douglasii putative RNA polymerase II transcription
            factor (acr1), putative arsenate reductase (acr2), and
            putative arsenite efflux pump (acr3) genes, complete cds
          Length = 3324

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 554  ataaagaagtaaagcaccaa 573
            ||||||||||||||||||||
Sbjct: 2860 ataaagaagtaaagcaccaa 2841
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>gb|AC163269.3| Mus musculus chromosome 15, clone RP24-276M6, complete sequence
          Length = 172683

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 98    tacaactacatatgcatgta 117
             ||||||||||||||||||||
Sbjct: 53118 tacaactacatatgcatgta 53137
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>gb|AC161884.5| Mus musculus BAC clone RP23-77K23 from chromosome 14, complete sequence
          Length = 243730

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 580    caaaagggaagccactgaga 599
              ||||||||||||||||||||
Sbjct: 134585 caaaagggaagccactgaga 134604
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>ref|XM_850511.1| PREDICTED: Canis familiaris hypothetical protein LOC606755 (LOC606755),
             mRNA
          Length = 13722

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 289   tctcctccaggctcagccct 308
             ||||||||||||||||||||
Sbjct: 11294 tctcctccaggctcagccct 11275
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>gb|AY102170.1| Canis familiaris polycystin 1 (PKD1) mRNA, complete cds
          Length = 13947

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 289   tctcctccaggctcagccct 308
             ||||||||||||||||||||
Sbjct: 11519 tctcctccaggctcagccct 11500
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>emb|AL160399.13| Human DNA sequence from clone RP11-161N21 on chromosome 6, complete
             sequence
          Length = 126595

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 492   gggaagatctcagagaccat 511
             ||||||||||||||||||||
Sbjct: 31235 gggaagatctcagagaccat 31216
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>emb|AL138898.19| Human DNA sequence from clone RP11-401F24 on chromosome 10 Contains
             gene FLJ20909, the gene for a novel protein (MGC35403), a
             novel gene (LOC219731), the 3' end of the UPF2 gene for
             UPF2 regulator of nonsense transcripts homolog (yeast)
             (FLJ38872) and four CpG islands, complete sequence
          Length = 206587

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 571   caacagcaacaaaagggaag 590
             ||||||||||||||||||||
Sbjct: 25682 caacagcaacaaaagggaag 25701
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>gb|AC006051.1| Homo sapiens 12p13.3 PAC RPCI5-1103G8 (Roswell Park Cancer Institute
            Human PAC Library) complete sequence
          Length = 38903

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 251  tggcatttccattcacttct 270
            ||||||||||||||||||||
Sbjct: 7329 tggcatttccattcacttct 7348
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>gb|AF483210.1| Canis familiaris polycystin-1 (PKD1) gene, partial cds
          Length = 39089

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 289   tctcctccaggctcagccct 308
             ||||||||||||||||||||
Sbjct: 35366 tctcctccaggctcagccct 35347
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>dbj|AP003603.1| Nostoc sp. PCC 7120 plasmid pCC7120gamma DNA, complete sequence
          Length = 101965

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 115   gtacagctacatcaactaca 134
             ||||||||||||||||||||
Sbjct: 88156 gtacagctacatcaactaca 88137



 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 115   gtacagctacatcaactaca 134
             ||||||||||||||||||||
Sbjct: 87142 gtacagctacatcaactaca 87123
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>gb|AC161052.2| Mus musculus BAC clone RP23-393J15 from chromosome 12, complete
             sequence
          Length = 201284

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 543   taacagccaacataaagaag 562
             ||||||||||||||||||||
Sbjct: 34739 taacagccaacataaagaag 34720
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>gb|AC155265.2| Mus musculus BAC clone RP23-253O24 from chromosome 13, complete sequence
          Length = 161897

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 557    aagaagtaaagcaccaacagcaacaaaa 584
              ||||| ||||||| ||||||||||||||
Sbjct: 138566 aagaaataaagcaacaacagcaacaaaa 138593
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>ref|XM_395247.2| PREDICTED: Apis mellifera similar to ENSANGP00000024280
          (LOC411780), partial mRNA
          Length = 1815

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 47 atgacagctgattcagaaaa 66
          ||||||||||||||||||||
Sbjct: 1  atgacagctgattcagaaaa 20
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>gb|AC027687.7| Homo sapiens chromosome 16 clone RP11-61L4, complete sequence
          Length = 169166

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 579   acaaaagggaagccactgagagcc 602
             |||| |||||||||||||||||||
Sbjct: 80581 acaacagggaagccactgagagcc 80558
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>gb|AC158655.4| Mus musculus  BAC RP23-406J21 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 201519

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 49    gacagctgattcagaaaaga 68
             ||||||||||||||||||||
Sbjct: 80681 gacagctgattcagaaaaga 80662
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>gb|DQ332116.1| Synthetic construct Saccharomyces cerevisiae clone FLH143310.01X
           ARR3 gene, complete sequence
          Length = 1215

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 554 ataaagaagtaaagcaccaa 573
           ||||||||||||||||||||
Sbjct: 878 ataaagaagtaaagcaccaa 859
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>gb|AC115699.9| Mus musculus chromosome 15, clone RP24-247B18, complete sequence
          Length = 169003

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 98   tacaactacatatgcatgta 117
            ||||||||||||||||||||
Sbjct: 5690 tacaactacatatgcatgta 5671
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>emb|CT033785.8| Mouse DNA sequence from clone RP23-445G17 on chromosome 13, complete
             sequence
          Length = 181922

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 557   aagaagtaaagcaccaacagcaacaaaa 584
             ||||| ||||||| ||||||||||||||
Sbjct: 34962 aagaaataaagcaacaacagcaacaaaa 34989
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>gb|U25841.1|YSCP9677 Saccharomyces cerevisiae chromosome XVI cosmid 9677
          Length = 37497

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 554   ataaagaagtaaagcaccaa 573
             ||||||||||||||||||||
Sbjct: 33432 ataaagaagtaaagcaccaa 33413
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>dbj|AP006535.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT02D13, TM0546,
             complete sequence
          Length = 107979

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 435   ttcgatccaaaatttgtgag 454
             ||||||||||||||||||||
Sbjct: 68280 ttcgatccaaaatttgtgag 68299
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>dbj|AB025576.1| Oryzias latipes Orla C3-2 mRNA, complete cds
          Length = 5323

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 252 ggcatttccattcacttctt 271
           ||||||||||||||||||||
Sbjct: 831 ggcatttccattcacttctt 812
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>dbj|AB025575.1| Oryzias latipes Orla C3-1 mRNA, complete cds
          Length = 5082

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 252 ggcatttccattcacttctt 271
           ||||||||||||||||||||
Sbjct: 839 ggcatttccattcacttctt 820


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,859,625
Number of Sequences: 3902068
Number of extensions: 5859625
Number of successful extensions: 106367
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 106156
Number of HSP's gapped (non-prelim): 201
length of query: 656
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 633
effective length of database: 17,143,297,704
effective search space: 10851707446632
effective search space used: 10851707446632
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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