ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags36c02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.14
2dbj|AK119673.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.14
3dbj|AK099309.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.14
4dbj|AK064923.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.14
5gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 44 0.14
6emb|AL731752.4|CNS08C81 Oryza sativa chromosome 12, . BAC OJ1536... 44 0.14
7emb|AL731751.4|CNS08C80 Oryza sativa chromosome 12, . BAC OJ1510... 44 0.14
8ref|XM_880094.1| PREDICTED: Bos taurus similar to Bone morphogen... 40 2.2
9ref|XM_880068.1| PREDICTED: Bos taurus similar to Bone morphogen... 40 2.2
10ref|XM_880047.1| PREDICTED: Bos taurus similar to Bone morphogen... 40 2.2
11ref|XM_867294.1| PREDICTED: Bos taurus similar to Bone morphogen... 40 2.2
12ref|NM_009755.2| Mus musculus bone morphogenetic protein 1 (Bmp1... 40 2.2
13gb|AY525078.1| Caenorhabditis elegans serine or cysteine proteas... 40 2.2
14gb|BC063079.1| Mus musculus bone morphogenetic protein 1, mRNA (... 40 2.2
15gb|AC133193.3| Mus musculus BAC clone RP23-396L1 from chromosome... 40 2.2
16gb|BC053923.1| Mus musculus bone morphogenetic protein 1, mRNA (... 40 2.2
17gb|AC122268.5| Mus musculus BAC clone RP23-216B15 from 14, compl... 40 2.2
18gb|AF026209.2| Caenorhabditis elegans cosmid C05E4, complete seq... 40 2.2
19gb|BC003925.1| Mus musculus cDNA clone IMAGE:3485360, **** WARNI... 40 2.2
20dbj|AK158218.1| Mus musculus adult inner ear cDNA, RIKEN full-le... 40 2.2
21dbj|AK147534.1| Mus musculus cDNA, RIKEN full-length enriched li... 40 2.2
22dbj|AK154239.1| Mus musculus NOD-derived CD11c +ve dendritic cel... 40 2.2
23ref|NM_070914.2| Caenorhabditis elegans SeRPin family member (sr... 40 2.2
24dbj|AK004995.2| Mus musculus adult male liver cDNA, RIKEN full-l... 40 2.2
25ref|XM_573814.1| PREDICTED: Rattus norvegicus bone morphogenetic... 40 2.2
26gb|BC066062.1| Mus musculus bone morphogenetic protein 1, mRNA (... 40 2.2
27emb|BX284624.4| Mouse DNA sequence from clone RP23-299A2 on chro... 40 2.2
28gb|L24755.1|MUSBMP1A Mus musculus bone morphogenetic protein (Bm... 40 2.2
29ref|XM_676926.1| Aspergillus nidulans FGSC A4 hypothetical prote... 38 8.8
30ref|XM_537480.2| PREDICTED: Canis familiaris similar to Glutathi... 38 8.8
31emb|AL450108.12| Human DNA sequence from clone RP11-456E1 on chr... 38 8.8
32gb|AF003530.2|AF003530 Homo sapiens homeobox protein CDX4 (CDX4)... 38 8.8
33gb|AC026201.3|AC026201 Homo sapiens chromosome 11 clone RP11-546... 38 8.8
34gb|AC021998.4|AC021998 Homo sapiens chromosome 11 clone RP11-116... 38 8.8
35dbj|AP006215.1| Homo sapiens genomic DNA, chromosome 11, clone:R... 38 8.8
36dbj|AP006214.1| Homo sapiens genomic DNA, chromosome 11, clone:R... 38 8.8

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 44.1 bits (22), Expect = 0.14
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                                  
Query: 146      cttgctggcgtacttgtcaggctcgtcatccttg 179
                |||| |||| || |||||||||||||||||||||
Sbjct: 19174356 cttgttggcatagttgtcaggctcgtcatccttg 19174323



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>dbj|AK119673.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-156-G08, full
           insert sequence
          Length = 812

 Score = 44.1 bits (22), Expect = 0.14
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 146 cttgctggcgtacttgtcaggctcgtcatccttg 179
           |||| |||| || |||||||||||||||||||||
Sbjct: 564 cttgttggcatagttgtcaggctcgtcatccttg 531



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>dbj|AK099309.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023146P18, full
           insert sequence
          Length = 1027

 Score = 44.1 bits (22), Expect = 0.14
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 146 cttgctggcgtacttgtcaggctcgtcatccttg 179
           |||| |||| || |||||||||||||||||||||
Sbjct: 812 cttgttggcatagttgtcaggctcgtcatccttg 779



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>dbj|AK064923.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000N14, full
           insert sequence
          Length = 1069

 Score = 44.1 bits (22), Expect = 0.14
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 146 cttgctggcgtacttgtcaggctcgtcatccttg 179
           |||| |||| || |||||||||||||||||||||
Sbjct: 821 cttgttggcatagttgtcaggctcgtcatccttg 788



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 44.1 bits (22), Expect = 0.14
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                                  
Query: 146      cttgctggcgtacttgtcaggctcgtcatccttg 179
                |||| |||| || |||||||||||||||||||||
Sbjct: 19100583 cttgttggcatagttgtcaggctcgtcatccttg 19100550



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>emb|AL731752.4|CNS08C81 Oryza sativa chromosome 12, . BAC OJ1536_D01 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 127026

 Score = 44.1 bits (22), Expect = 0.14
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                               
Query: 146   cttgctggcgtacttgtcaggctcgtcatccttg 179
             |||| |||| || |||||||||||||||||||||
Sbjct: 51623 cttgttggcatagttgtcaggctcgtcatccttg 51656



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>emb|AL731751.4|CNS08C80 Oryza sativa chromosome 12, . BAC OJ1510_A06 of library Monsanto from
            chromosome 12 of cultivar Nipponbare of ssp. japonica of
            Oryza sativa (rice), complete sequence
          Length = 136155

 Score = 44.1 bits (22), Expect = 0.14
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                              
Query: 146  cttgctggcgtacttgtcaggctcgtcatccttg 179
            |||| |||| || |||||||||||||||||||||
Sbjct: 7686 cttgttggcatagttgtcaggctcgtcatccttg 7653



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>ref|XM_880094.1| PREDICTED: Bos taurus similar to Bone morphogenetic protein 1
            precursor (BMP-1) (Procollagen C-proteinase) (PCP)
            (Mammalian tolloid protein) (mTld), transcript variant 7
            (LOC510360), mRNA
          Length = 3585

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 144  ttcttgctggcgtacttgtcaggc 167
            |||||||||| |||||||||||||
Sbjct: 2330 ttcttgctggggtacttgtcaggc 2307



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>ref|XM_880068.1| PREDICTED: Bos taurus similar to Bone morphogenetic protein 1
            precursor (BMP-1) (Procollagen C-proteinase) (PCP)
            (Mammalian tolloid protein) (mTld), transcript variant 6
            (LOC510360), mRNA
          Length = 3570

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 144  ttcttgctggcgtacttgtcaggc 167
            |||||||||| |||||||||||||
Sbjct: 2315 ttcttgctggggtacttgtcaggc 2292



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>ref|XM_880047.1| PREDICTED: Bos taurus similar to Bone morphogenetic protein 1
            precursor (BMP-1) (Procollagen C-proteinase) (PCP)
            (Mammalian tolloid protein) (mTld), transcript variant 5
            (LOC510360), mRNA
          Length = 3105

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 144  ttcttgctggcgtacttgtcaggc 167
            |||||||||| |||||||||||||
Sbjct: 1850 ttcttgctggggtacttgtcaggc 1827



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>ref|XM_867294.1| PREDICTED: Bos taurus similar to Bone morphogenetic protein 1
            precursor (BMP-1) (Procollagen C-proteinase) (PCP)
            (Mammalian tolloid protein) (mTld), transcript variant 3
            (LOC510360), mRNA
          Length = 3540

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 144  ttcttgctggcgtacttgtcaggc 167
            |||||||||| |||||||||||||
Sbjct: 2285 ttcttgctggggtacttgtcaggc 2262



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>ref|NM_009755.2| Mus musculus bone morphogenetic protein 1 (Bmp1), mRNA
          Length = 3705

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 144  ttcttgctggcgtacttgtcaggc 167
            |||||||||| |||||||||||||
Sbjct: 2478 ttcttgctggggtacttgtcaggc 2455



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>gb|AY525078.1| Caenorhabditis elegans serine or cysteine protease inhibitor
           (srp-1) mRNA, complete cds
          Length = 1146

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 47  aaagtagtctctggtctcgaggaccatt 74
           ||||||||||||||||||| ||| ||||
Sbjct: 635 aaagtagtctctggtctcgcggagcatt 608



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>gb|BC063079.1| Mus musculus bone morphogenetic protein 1, mRNA (cDNA clone
            IMAGE:6401636), partial cds
          Length = 2902

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 144  ttcttgctggcgtacttgtcaggc 167
            |||||||||| |||||||||||||
Sbjct: 1680 ttcttgctggggtacttgtcaggc 1657



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>gb|AC133193.3| Mus musculus BAC clone RP23-396L1 from chromosome 2, complete sequence
          Length = 180931

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 74     tcacctcacacttatccaaggtacataa 101
              |||||||||||||| ||||| |||||||
Sbjct: 136234 tcacctcacacttagccaagttacataa 136207



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>gb|BC053923.1| Mus musculus bone morphogenetic protein 1, mRNA (cDNA clone
            IMAGE:6309557), containing frame-shift errors
          Length = 4379

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 144  ttcttgctggcgtacttgtcaggc 167
            |||||||||| |||||||||||||
Sbjct: 3136 ttcttgctggggtacttgtcaggc 3113



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>gb|AC122268.5| Mus musculus BAC clone RP23-216B15 from 14, complete sequence
          Length = 207136

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 144    ttcttgctggcgtacttgtcaggc 167
              |||||||||| |||||||||||||
Sbjct: 104526 ttcttgctggggtacttgtcaggc 104549



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>gb|AF026209.2| Caenorhabditis elegans cosmid C05E4, complete sequence
          Length = 40816

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 47    aaagtagtctctggtctcgaggaccatt 74
             ||||||||||||||||||| ||| ||||
Sbjct: 29960 aaagtagtctctggtctcgcggagcatt 29933



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>gb|BC003925.1| Mus musculus cDNA clone IMAGE:3485360, **** WARNING: chimeric clone
            ****
          Length = 2811

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 144  ttcttgctggcgtacttgtcaggc 167
            |||||||||| |||||||||||||
Sbjct: 1574 ttcttgctggggtacttgtcaggc 1551



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>dbj|AK158218.1| Mus musculus adult inner ear cDNA, RIKEN full-length enriched
            library, clone:F930043I08 product:bone morphogenetic
            protein 1, full insert sequence
          Length = 2545

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 144  ttcttgctggcgtacttgtcaggc 167
            |||||||||| |||||||||||||
Sbjct: 2543 ttcttgctggggtacttgtcaggc 2520



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>dbj|AK147534.1| Mus musculus cDNA, RIKEN full-length enriched library,
            clone:M5C1066F11 product:bone morphogenetic protein 1,
            full insert sequence
          Length = 5365

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 144  ttcttgctggcgtacttgtcaggc 167
            |||||||||| |||||||||||||
Sbjct: 4161 ttcttgctggggtacttgtcaggc 4138



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>dbj|AK154239.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN
            full-length enriched library, clone:F630011I24
            product:bone morphogenetic protein 1, full insert
            sequence
          Length = 2554

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 144  ttcttgctggcgtacttgtcaggc 167
            |||||||||| |||||||||||||
Sbjct: 2552 ttcttgctggggtacttgtcaggc 2529



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>ref|NM_070914.2| Caenorhabditis elegans SeRPin family member (srp-1) (srp-1) mRNA,
           complete cds
          Length = 1150

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 47  aaagtagtctctggtctcgaggaccatt 74
           ||||||||||||||||||| ||| ||||
Sbjct: 633 aaagtagtctctggtctcgcggagcatt 606



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>dbj|AK004995.2| Mus musculus adult male liver cDNA, RIKEN full-length enriched
            library, clone:1300013K14 product:bone morphogenetic
            protein 1, full insert sequence
          Length = 3388

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 144  ttcttgctggcgtacttgtcaggc 167
            |||||||||| |||||||||||||
Sbjct: 2184 ttcttgctggggtacttgtcaggc 2161



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>ref|XM_573814.1| PREDICTED: Rattus norvegicus bone morphogenetic protein 1
            (procollagen C-proetinase) (Bmp1), mRNA
          Length = 3668

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 144  ttcttgctggcgtacttgtcaggc 167
            |||||||||| |||||||||||||
Sbjct: 2466 ttcttgctggggtacttgtcaggc 2443



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>gb|BC066062.1| Mus musculus bone morphogenetic protein 1, mRNA (cDNA clone MGC:86027
            IMAGE:6849066), complete cds
          Length = 3705

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 144  ttcttgctggcgtacttgtcaggc 167
            |||||||||| |||||||||||||
Sbjct: 2478 ttcttgctggggtacttgtcaggc 2455



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>emb|BX284624.4| Mouse DNA sequence from clone RP23-299A2 on chromosome 2, complete
              sequence
          Length = 209836

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 74     tcacctcacacttatccaaggtacataa 101
              |||||||||||||| ||||| |||||||
Sbjct: 116657 tcacctcacacttagccaagttacataa 116684



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>gb|L24755.1|MUSBMP1A Mus musculus bone morphogenetic protein (Bmp-1) mRNA, complete cds
          Length = 2976

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 144  ttcttgctggcgtacttgtcaggc 167
            |||||||||| |||||||||||||
Sbjct: 2327 ttcttgctggggtacttgtcaggc 2304



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>ref|XM_676926.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN8749.2), mRNA
          Length = 1173

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 52  agtctctggtctcgaggaccatt 74
           |||||||||||| ||||||||||
Sbjct: 460 agtctctggtctggaggaccatt 482



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>ref|XM_537480.2| PREDICTED: Canis familiaris similar to Glutathione
           peroxidase-gastrointestinal (GSHPx-GI) (Glutathione
           peroxidase-related protein 2) (Gastrointestinal
           glutathione peroxidase) (GPRP) (LOC480356), mRNA
          Length = 1122

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 68  gaccattcacctcacactt 86
           |||||||||||||||||||
Sbjct: 553 gaccattcacctcacactt 535



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>emb|AL450108.12| Human DNA sequence from clone RP11-456E1 on chromosome X Contains the
             CDX4 gene for caudal type homeo box transcription factor
             4, a mortality factor 4 like 1 (MORF4L1) pseudogene, a
             mitogen-activated protein kinase kinase 4(LOC139201,
             MAP2K4) pseudogene and a ribosomal protein L7 (RPL7)
             pseudogene, complete sequence
          Length = 188281

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 117   aggagatgcagactggagc 135
             |||||||||||||||||||
Sbjct: 32224 aggagatgcagactggagc 32206



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>gb|AF003530.2|AF003530 Homo sapiens homeobox protein CDX4 (CDX4) gene, complete cds and
             flanking repeat regions
          Length = 97968

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 117   aggagatgcagactggagc 135
             |||||||||||||||||||
Sbjct: 96299 aggagatgcagactggagc 96317



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>gb|AC026201.3|AC026201 Homo sapiens chromosome 11 clone RP11-546N8 map 11q, complete sequence
          Length = 202218

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 117    aggagatgcagactggagc 135
              |||||||||||||||||||
Sbjct: 134869 aggagatgcagactggagc 134851



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>gb|AC021998.4|AC021998 Homo sapiens chromosome 11 clone RP11-116N3 map 11, complete sequence
          Length = 142446

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 117   aggagatgcagactggagc 135
             |||||||||||||||||||
Sbjct: 99885 aggagatgcagactggagc 99903



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>dbj|AP006215.1| Homo sapiens genomic DNA, chromosome 11, clone:RP11-729P6, complete
              sequence
          Length = 189310

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 117    aggagatgcagactggagc 135
              |||||||||||||||||||
Sbjct: 185919 aggagatgcagactggagc 185937



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>dbj|AP006214.1| Homo sapiens genomic DNA, chromosome 11, clone:RP11-176I21, complete
            sequence
          Length = 62000

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 117  aggagatgcagactggagc 135
            |||||||||||||||||||
Sbjct: 8742 aggagatgcagactggagc 8760


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,048,023
Number of Sequences: 3902068
Number of extensions: 1048023
Number of successful extensions: 73297
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 73210
Number of HSP's gapped (non-prelim): 87
length of query: 179
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 157
effective length of database: 17,147,199,772
effective search space: 2692110364204
effective search space used: 2692110364204
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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