| Clone Name | rbags36c02 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 44.1 bits (22), Expect = 0.14 Identities = 31/34 (91%) Strand = Plus / Minus Query: 146 cttgctggcgtacttgtcaggctcgtcatccttg 179 |||| |||| || ||||||||||||||||||||| Sbjct: 19174356 cttgttggcatagttgtcaggctcgtcatccttg 19174323
>dbj|AK119673.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-156-G08, full insert sequence Length = 812 Score = 44.1 bits (22), Expect = 0.14 Identities = 31/34 (91%) Strand = Plus / Minus Query: 146 cttgctggcgtacttgtcaggctcgtcatccttg 179 |||| |||| || ||||||||||||||||||||| Sbjct: 564 cttgttggcatagttgtcaggctcgtcatccttg 531
>dbj|AK099309.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023146P18, full insert sequence Length = 1027 Score = 44.1 bits (22), Expect = 0.14 Identities = 31/34 (91%) Strand = Plus / Minus Query: 146 cttgctggcgtacttgtcaggctcgtcatccttg 179 |||| |||| || ||||||||||||||||||||| Sbjct: 812 cttgttggcatagttgtcaggctcgtcatccttg 779
>dbj|AK064923.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000N14, full insert sequence Length = 1069 Score = 44.1 bits (22), Expect = 0.14 Identities = 31/34 (91%) Strand = Plus / Minus Query: 146 cttgctggcgtacttgtcaggctcgtcatccttg 179 |||| |||| || ||||||||||||||||||||| Sbjct: 821 cttgttggcatagttgtcaggctcgtcatccttg 788
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 44.1 bits (22), Expect = 0.14 Identities = 31/34 (91%) Strand = Plus / Minus Query: 146 cttgctggcgtacttgtcaggctcgtcatccttg 179 |||| |||| || ||||||||||||||||||||| Sbjct: 19100583 cttgttggcatagttgtcaggctcgtcatccttg 19100550
>emb|AL731752.4|CNS08C81 Oryza sativa chromosome 12, . BAC OJ1536_D01 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 127026 Score = 44.1 bits (22), Expect = 0.14 Identities = 31/34 (91%) Strand = Plus / Plus Query: 146 cttgctggcgtacttgtcaggctcgtcatccttg 179 |||| |||| || ||||||||||||||||||||| Sbjct: 51623 cttgttggcatagttgtcaggctcgtcatccttg 51656
>emb|AL731751.4|CNS08C80 Oryza sativa chromosome 12, . BAC OJ1510_A06 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 136155 Score = 44.1 bits (22), Expect = 0.14 Identities = 31/34 (91%) Strand = Plus / Minus Query: 146 cttgctggcgtacttgtcaggctcgtcatccttg 179 |||| |||| || ||||||||||||||||||||| Sbjct: 7686 cttgttggcatagttgtcaggctcgtcatccttg 7653
>ref|XM_880094.1| PREDICTED: Bos taurus similar to Bone morphogenetic protein 1 precursor (BMP-1) (Procollagen C-proteinase) (PCP) (Mammalian tolloid protein) (mTld), transcript variant 7 (LOC510360), mRNA Length = 3585 Score = 40.1 bits (20), Expect = 2.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 144 ttcttgctggcgtacttgtcaggc 167 |||||||||| ||||||||||||| Sbjct: 2330 ttcttgctggggtacttgtcaggc 2307
>ref|XM_880068.1| PREDICTED: Bos taurus similar to Bone morphogenetic protein 1 precursor (BMP-1) (Procollagen C-proteinase) (PCP) (Mammalian tolloid protein) (mTld), transcript variant 6 (LOC510360), mRNA Length = 3570 Score = 40.1 bits (20), Expect = 2.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 144 ttcttgctggcgtacttgtcaggc 167 |||||||||| ||||||||||||| Sbjct: 2315 ttcttgctggggtacttgtcaggc 2292
>ref|XM_880047.1| PREDICTED: Bos taurus similar to Bone morphogenetic protein 1 precursor (BMP-1) (Procollagen C-proteinase) (PCP) (Mammalian tolloid protein) (mTld), transcript variant 5 (LOC510360), mRNA Length = 3105 Score = 40.1 bits (20), Expect = 2.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 144 ttcttgctggcgtacttgtcaggc 167 |||||||||| ||||||||||||| Sbjct: 1850 ttcttgctggggtacttgtcaggc 1827
>ref|XM_867294.1| PREDICTED: Bos taurus similar to Bone morphogenetic protein 1 precursor (BMP-1) (Procollagen C-proteinase) (PCP) (Mammalian tolloid protein) (mTld), transcript variant 3 (LOC510360), mRNA Length = 3540 Score = 40.1 bits (20), Expect = 2.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 144 ttcttgctggcgtacttgtcaggc 167 |||||||||| ||||||||||||| Sbjct: 2285 ttcttgctggggtacttgtcaggc 2262
>ref|NM_009755.2| Mus musculus bone morphogenetic protein 1 (Bmp1), mRNA Length = 3705 Score = 40.1 bits (20), Expect = 2.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 144 ttcttgctggcgtacttgtcaggc 167 |||||||||| ||||||||||||| Sbjct: 2478 ttcttgctggggtacttgtcaggc 2455
>gb|AY525078.1| Caenorhabditis elegans serine or cysteine protease inhibitor (srp-1) mRNA, complete cds Length = 1146 Score = 40.1 bits (20), Expect = 2.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 47 aaagtagtctctggtctcgaggaccatt 74 ||||||||||||||||||| ||| |||| Sbjct: 635 aaagtagtctctggtctcgcggagcatt 608
>gb|BC063079.1| Mus musculus bone morphogenetic protein 1, mRNA (cDNA clone IMAGE:6401636), partial cds Length = 2902 Score = 40.1 bits (20), Expect = 2.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 144 ttcttgctggcgtacttgtcaggc 167 |||||||||| ||||||||||||| Sbjct: 1680 ttcttgctggggtacttgtcaggc 1657
>gb|AC133193.3| Mus musculus BAC clone RP23-396L1 from chromosome 2, complete sequence Length = 180931 Score = 40.1 bits (20), Expect = 2.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 74 tcacctcacacttatccaaggtacataa 101 |||||||||||||| ||||| ||||||| Sbjct: 136234 tcacctcacacttagccaagttacataa 136207
>gb|BC053923.1| Mus musculus bone morphogenetic protein 1, mRNA (cDNA clone IMAGE:6309557), containing frame-shift errors Length = 4379 Score = 40.1 bits (20), Expect = 2.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 144 ttcttgctggcgtacttgtcaggc 167 |||||||||| ||||||||||||| Sbjct: 3136 ttcttgctggggtacttgtcaggc 3113
>gb|AC122268.5| Mus musculus BAC clone RP23-216B15 from 14, complete sequence Length = 207136 Score = 40.1 bits (20), Expect = 2.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 144 ttcttgctggcgtacttgtcaggc 167 |||||||||| ||||||||||||| Sbjct: 104526 ttcttgctggggtacttgtcaggc 104549
>gb|AF026209.2| Caenorhabditis elegans cosmid C05E4, complete sequence Length = 40816 Score = 40.1 bits (20), Expect = 2.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 47 aaagtagtctctggtctcgaggaccatt 74 ||||||||||||||||||| ||| |||| Sbjct: 29960 aaagtagtctctggtctcgcggagcatt 29933
>gb|BC003925.1| Mus musculus cDNA clone IMAGE:3485360, **** WARNING: chimeric clone **** Length = 2811 Score = 40.1 bits (20), Expect = 2.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 144 ttcttgctggcgtacttgtcaggc 167 |||||||||| ||||||||||||| Sbjct: 1574 ttcttgctggggtacttgtcaggc 1551
>dbj|AK158218.1| Mus musculus adult inner ear cDNA, RIKEN full-length enriched library, clone:F930043I08 product:bone morphogenetic protein 1, full insert sequence Length = 2545 Score = 40.1 bits (20), Expect = 2.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 144 ttcttgctggcgtacttgtcaggc 167 |||||||||| ||||||||||||| Sbjct: 2543 ttcttgctggggtacttgtcaggc 2520
>dbj|AK147534.1| Mus musculus cDNA, RIKEN full-length enriched library, clone:M5C1066F11 product:bone morphogenetic protein 1, full insert sequence Length = 5365 Score = 40.1 bits (20), Expect = 2.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 144 ttcttgctggcgtacttgtcaggc 167 |||||||||| ||||||||||||| Sbjct: 4161 ttcttgctggggtacttgtcaggc 4138
>dbj|AK154239.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630011I24 product:bone morphogenetic protein 1, full insert sequence Length = 2554 Score = 40.1 bits (20), Expect = 2.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 144 ttcttgctggcgtacttgtcaggc 167 |||||||||| ||||||||||||| Sbjct: 2552 ttcttgctggggtacttgtcaggc 2529
>ref|NM_070914.2| Caenorhabditis elegans SeRPin family member (srp-1) (srp-1) mRNA, complete cds Length = 1150 Score = 40.1 bits (20), Expect = 2.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 47 aaagtagtctctggtctcgaggaccatt 74 ||||||||||||||||||| ||| |||| Sbjct: 633 aaagtagtctctggtctcgcggagcatt 606
>dbj|AK004995.2| Mus musculus adult male liver cDNA, RIKEN full-length enriched library, clone:1300013K14 product:bone morphogenetic protein 1, full insert sequence Length = 3388 Score = 40.1 bits (20), Expect = 2.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 144 ttcttgctggcgtacttgtcaggc 167 |||||||||| ||||||||||||| Sbjct: 2184 ttcttgctggggtacttgtcaggc 2161
>ref|XM_573814.1| PREDICTED: Rattus norvegicus bone morphogenetic protein 1 (procollagen C-proetinase) (Bmp1), mRNA Length = 3668 Score = 40.1 bits (20), Expect = 2.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 144 ttcttgctggcgtacttgtcaggc 167 |||||||||| ||||||||||||| Sbjct: 2466 ttcttgctggggtacttgtcaggc 2443
>gb|BC066062.1| Mus musculus bone morphogenetic protein 1, mRNA (cDNA clone MGC:86027 IMAGE:6849066), complete cds Length = 3705 Score = 40.1 bits (20), Expect = 2.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 144 ttcttgctggcgtacttgtcaggc 167 |||||||||| ||||||||||||| Sbjct: 2478 ttcttgctggggtacttgtcaggc 2455
>emb|BX284624.4| Mouse DNA sequence from clone RP23-299A2 on chromosome 2, complete sequence Length = 209836 Score = 40.1 bits (20), Expect = 2.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 74 tcacctcacacttatccaaggtacataa 101 |||||||||||||| ||||| ||||||| Sbjct: 116657 tcacctcacacttagccaagttacataa 116684
>gb|L24755.1|MUSBMP1A Mus musculus bone morphogenetic protein (Bmp-1) mRNA, complete cds Length = 2976 Score = 40.1 bits (20), Expect = 2.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 144 ttcttgctggcgtacttgtcaggc 167 |||||||||| ||||||||||||| Sbjct: 2327 ttcttgctggggtacttgtcaggc 2304
>ref|XM_676926.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN8749.2), mRNA Length = 1173 Score = 38.2 bits (19), Expect = 8.8 Identities = 22/23 (95%) Strand = Plus / Plus Query: 52 agtctctggtctcgaggaccatt 74 |||||||||||| |||||||||| Sbjct: 460 agtctctggtctggaggaccatt 482
>ref|XM_537480.2| PREDICTED: Canis familiaris similar to Glutathione peroxidase-gastrointestinal (GSHPx-GI) (Glutathione peroxidase-related protein 2) (Gastrointestinal glutathione peroxidase) (GPRP) (LOC480356), mRNA Length = 1122 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 68 gaccattcacctcacactt 86 ||||||||||||||||||| Sbjct: 553 gaccattcacctcacactt 535
>emb|AL450108.12| Human DNA sequence from clone RP11-456E1 on chromosome X Contains the CDX4 gene for caudal type homeo box transcription factor 4, a mortality factor 4 like 1 (MORF4L1) pseudogene, a mitogen-activated protein kinase kinase 4(LOC139201, MAP2K4) pseudogene and a ribosomal protein L7 (RPL7) pseudogene, complete sequence Length = 188281 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 117 aggagatgcagactggagc 135 ||||||||||||||||||| Sbjct: 32224 aggagatgcagactggagc 32206
>gb|AF003530.2|AF003530 Homo sapiens homeobox protein CDX4 (CDX4) gene, complete cds and flanking repeat regions Length = 97968 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 117 aggagatgcagactggagc 135 ||||||||||||||||||| Sbjct: 96299 aggagatgcagactggagc 96317
>gb|AC026201.3|AC026201 Homo sapiens chromosome 11 clone RP11-546N8 map 11q, complete sequence Length = 202218 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 117 aggagatgcagactggagc 135 ||||||||||||||||||| Sbjct: 134869 aggagatgcagactggagc 134851
>gb|AC021998.4|AC021998 Homo sapiens chromosome 11 clone RP11-116N3 map 11, complete sequence Length = 142446 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 117 aggagatgcagactggagc 135 ||||||||||||||||||| Sbjct: 99885 aggagatgcagactggagc 99903
>dbj|AP006215.1| Homo sapiens genomic DNA, chromosome 11, clone:RP11-729P6, complete sequence Length = 189310 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 117 aggagatgcagactggagc 135 ||||||||||||||||||| Sbjct: 185919 aggagatgcagactggagc 185937
>dbj|AP006214.1| Homo sapiens genomic DNA, chromosome 11, clone:RP11-176I21, complete sequence Length = 62000 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 117 aggagatgcagactggagc 135 ||||||||||||||||||| Sbjct: 8742 aggagatgcagactggagc 8760 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,048,023 Number of Sequences: 3902068 Number of extensions: 1048023 Number of successful extensions: 73297 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 36 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 73210 Number of HSP's gapped (non-prelim): 87 length of query: 179 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 157 effective length of database: 17,147,199,772 effective search space: 2692110364204 effective search space used: 2692110364204 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)