ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags36b24
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1HEM1_METTH (O27093) Glutamyl-tRNA reductase (EC 1.2.1.70) (GluTR) 31 0.97
2MDR17_ARATH (Q9M1Q9) Multidrug resistance protein 17 (P-glycopro... 28 4.8
3YLS2_CAEEL (P34387) Hypothetical protein F09G8.2 precursor (EC 3... 28 6.3
4O5AP2_HUMAN (Q8NGF4) Olfactory receptor 5AP2 28 8.2

>HEM1_METTH (O27093) Glutamyl-tRNA reductase (EC 1.2.1.70) (GluTR)|
          Length = 402

 Score = 30.8 bits (68), Expect = 0.97
 Identities = 18/68 (26%), Positives = 32/68 (47%)
 Frame = -1

Query: 214 NERSYKRQSHHKAFRNKTXKNKDERSGLLKFFMRL*FCHVFHFILFSILQFTSVGN*SYI 35
           N  S +R+   +A       N  +  G+++   R     +FH I  SI Q    G+  ++
Sbjct: 332 NMESLRRREAERALNK--IMNSSDPEGVIEALSRSIVDKIFHDIAISIRQAAERGDEEFL 389

Query: 34  AVCKKLFH 11
           ++C KLF+
Sbjct: 390 SMCAKLFN 397



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>MDR17_ARATH (Q9M1Q9) Multidrug resistance protein 17 (P-glycoprotein 21)|
          Length = 1292

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
 Frame = -1

Query: 214 NERSYKRQSHHKAFRNKTXKNK---DERSGLLKFFMRL*FCHVFHFILFSILQFTSVGN 47
           +E+  K +S  K  + KT KNK   DE++  + F     F   F  IL  +    +VGN
Sbjct: 32  DEKELKTESDLKEEKKKTEKNKQEEDEKTKTVPFHKLFAFADSFDIILMILGTIGAVGN 90



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>YLS2_CAEEL (P34387) Hypothetical protein F09G8.2 precursor (EC 3.1.-.-)|
          Length = 367

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +2

Query: 86  EMKNMTELQTHEKFQKSTPFIFVFXGFIPESFVVTLPLI 202
           E++++TEL  H K+ ++TP+I      IPE +    P +
Sbjct: 156 EVQHLTELAEHWKYIQATPYII----NIPEKYATRFPTL 190



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>O5AP2_HUMAN (Q8NGF4) Olfactory receptor 5AP2|
          Length = 316

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -3

Query: 104 LSCFSFHFVFNFTIHFGRKLIIHCSM*KVISYLC 3
           LSC   HF     + F   ++I C M  +ISYLC
Sbjct: 193 LSCSDTHFNGIVIMAFSSFIVISCVMIVLISYLC 226


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,221,847
Number of Sequences: 219361
Number of extensions: 441021
Number of successful extensions: 1008
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1007
length of database: 80,573,946
effective HSP length: 58
effective length of database: 67,851,008
effective search space used: 1628424192
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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