ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags35m20
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1FOLH1_HUMAN (Q04609) Glutamate carboxypeptidase 2 (EC 3.4.17.21)... 31 1.6
2FOLH1_RAT (P70627) Glutamate carboxypeptidase 2 (EC 3.4.17.21) (... 30 4.6
3ADH2_LYCES (P28032) Alcohol dehydrogenase 2 (EC 1.1.1.1) 29 7.8
4UL34_HHV6U (P52465) Virion protein U34 29 7.8
5TES26_TOXCA (P54190) 26 kDa secreted antigen precursor (Toxocara... 29 7.8

>FOLH1_HUMAN (Q04609) Glutamate carboxypeptidase 2 (EC 3.4.17.21) (Glutamate|
           carboxypeptidase II) (Membrane glutamate
           carboxypeptidase) (mGCP) (N-acetylated-alpha-linked
           acidic dipeptidase I) (NAALADase I)
           (Pteroylpoly-gamma-glutamate carboxypeptidase) (F
          Length = 750

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +2

Query: 287 GGEPPSRGGATIADVDKQ-GTMKMDGWWVRRPLLLACED 400
           GG  P  G A + ++ +  GT+K +GW  RR +L A  D
Sbjct: 384 GGIDPQSGAAVVHEIVRSFGTLKKEGWRPRRTILFASWD 422



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>FOLH1_RAT (P70627) Glutamate carboxypeptidase 2 (EC 3.4.17.21) (Glutamate|
           carboxypeptidase II) (Membrane glutamate
           carboxypeptidase) (mGCP) (N-acetylated-alpha-linked
           acidic dipeptidase I) (NAALADase I)
           (Pteroylpoly-gamma-glutamate carboxypeptidase) (Fol
          Length = 752

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +2

Query: 287 GGEPPSRGGATIADVDKQ-GTMKMDGWWVRRPLLLACED 400
           GG  P  G A + ++ +  GT+K  GW  RR +L A  D
Sbjct: 386 GGIDPQSGAAVVHEIVRTFGTLKKKGWRPRRTILFASWD 424



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>ADH2_LYCES (P28032) Alcohol dehydrogenase 2 (EC 1.1.1.1)|
          Length = 380

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 17/34 (50%), Positives = 19/34 (55%)
 Frame = +3

Query: 366 GCDALCYLLAKTDDRCRCRCGLSTGCGHLGSSLN 467
           GC A    LA  D  C   CG+STG   LG+SLN
Sbjct: 159 GCVAKINPLAPLDKVCVLSCGISTG---LGASLN 189



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>UL34_HHV6U (P52465) Virion protein U34|
          Length = 276

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -1

Query: 456 NQGGRNLYSNRICIGIGHRSSQASSKGR 373
           + G ++L SNR C G+  RSS    KGR
Sbjct: 172 SMGKQHLESNRFCQGLRRRSSHVLEKGR 199



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>TES26_TOXCA (P54190) 26 kDa secreted antigen precursor (Toxocara|
           excretory-secretory antigen 26) (TES-26)
          Length = 262

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 405 DRCRCRCGLSTGCGHLGSSL 464
           DRC+  CGL  GCG + S +
Sbjct: 84  DRCQKTCGLCAGCGFISSGI 103


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,439,466
Number of Sequences: 219361
Number of extensions: 1298291
Number of successful extensions: 3591
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3586
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3478785780
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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