ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbags35m14 |
|---|---|
| Clone Library Name | barley_pub |
>RBL1B_THIFE (Q07087) Ribulose bisphosphate carboxylase large chain 2 (EC| 4.1.1.39) (RuBisCO large subunit 2) Length = 473 Score = 34.3 bits (77), Expect = 0.26 Identities = 34/115 (29%), Positives = 51/115 (44%), Gaps = 6/115 (5%) Frame = -3 Query: 494 NTSLPNLRIDNSIM------PRQTLDGGNTGGVPSLQDGKIDQQAVGNQLNYSNNDLVGT 333 NT L N DN ++ + LD G+ KI + + G+ L+ + +VG Sbjct: 270 NTGLANWCRDNGMLLHIHRAMHRVLDRNPHHGIHFRVLTKILRLSGGDHLH--SGTVVGK 327 Query: 332 SGLQRELSGGLDDIVVDMFRPDNDTGGIFIDTDWGLV*PVCFHQVPCARFSAFVW 168 RE + G DI+ D F ++ + GIF D DWG + V +P A VW Sbjct: 328 LEGDREATLGWIDIMRDRFIKEDRSRGIFFDQDWGSMPGV----MPVASGGIHVW 378
>RBL_SOVGS (Q673V5) Ribulose bisphosphate carboxylase large chain (EC| 4.1.1.39) (RuBisCO large subunit) Length = 472 Score = 33.1 bits (74), Expect = 0.57 Identities = 25/76 (32%), Positives = 38/76 (50%) Frame = -3 Query: 395 KIDQQAVGNQLNYSNNDLVGTSGLQRELSGGLDDIVVDMFRPDNDTGGIFIDTDWGLV*P 216 KI + + G+ L+ + +VG RE + G DI+ D F ++ + GIF D DWG + Sbjct: 308 KILRLSGGDHLH--SGTVVGKLEGDREATLGWIDIMRDSFNKEDRSRGIFFDQDWGSMPG 365 Query: 215 VCFHQVPCARFSAFVW 168 V +P A VW Sbjct: 366 V----LPVASGGIHVW 377
>RBL1_THIDA (Q56259) Ribulose bisphosphate carboxylase large chain (EC| 4.1.1.39) (RuBisCO large subunit) Length = 473 Score = 32.0 bits (71), Expect = 1.3 Identities = 34/115 (29%), Positives = 50/115 (43%), Gaps = 6/115 (5%) Frame = -3 Query: 494 NTSLPNLRIDNSIM------PRQTLDGGNTGGVPSLQDGKIDQQAVGNQLNYSNNDLVGT 333 NT L N DN ++ LD G+ KI + + G+ L+ + +VG Sbjct: 270 NTGLANWCRDNGMLLHIHRAMHAVLDRNPHHGIHFRVLTKILRLSGGDHLH--SGTVVGK 327 Query: 332 SGLQRELSGGLDDIVVDMFRPDNDTGGIFIDTDWGLV*PVCFHQVPCARFSAFVW 168 RE + G D++ D F ++ + GIF D DWG + P F P A VW Sbjct: 328 LEGDREATLGWIDMMRDSFVKEDRSRGIFFDQDWGSM-PGVF---PVASGGIHVW 378
>MT1H_HUMAN (P80294) Metallothionein-1H (MT-1H) (Metallothionein-IH) (MT-IH)| (Metallothionein-0) (MT-0) Length = 61 Score = 31.2 bits (69), Expect = 2.2 Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 2/41 (4%) Frame = +2 Query: 443 SALA*SNCQCEGLAK--KC*CLNC*TQGCYCVPLSSLCCXQ 559 S A +C C G K KC C +C C C PL C Q Sbjct: 6 SCEAGGSCACAGSCKCKKCKCTSCKKSCCSCCPLGCAKCAQ 46
>FLAEY_CAUCR (P15345) Regulatory protein flaEY| Length = 954 Score = 30.8 bits (68), Expect = 2.8 Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 4/68 (5%) Frame = -3 Query: 443 TLDGGNTGGVPSLQDGKIDQQAV-GNQL---NYSNNDLVGTSGLQRELSGGLDDIVVDMF 276 TL G T + SL+ G+I + G QL Y+ N+L+ G SGG+D V M Sbjct: 590 TLTAGATRDLGSLKGGEIAGLKIDGGQLYVGGYTANNLMSIGGATTAPSGGMDGFVGRMS 649 Query: 275 RPDNDTGG 252 +DT G Sbjct: 650 LDISDTTG 657
>ATL3A_ARATH (Q9SRQ8) RING-H2 finger protein ATL3A| Length = 356 Score = 30.8 bits (68), Expect = 2.8 Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 5/77 (6%) Frame = -3 Query: 527 NSNLAFSNSGINTS-----LPNLRIDNSIMPRQTLDGGNTGGVPSLQDGKIDQQAVGNQL 363 N + N+ I+T + NL ++NS +T++ G+T P +QD + ++ L Sbjct: 217 NQQIVTENNSISTGDDSVVVVNLDLENSRSRNETVNEGSTPKPPEMQDSRDGEERRSASL 276 Query: 362 NYSNNDLVGTSGLQREL 312 N S +V + + RE+ Sbjct: 277 N-SGGGVVSIADILREI 292
>OLF8_MOUSE (Q60892) Olfactory receptor 8 (Odorant receptor M64)| Length = 310 Score = 30.4 bits (67), Expect = 3.7 Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 3/70 (4%) Frame = -1 Query: 391 LISKLLVISSITATMISWGRVG---CKGSSVVVWMTLLLTCSGRITILVAFSSTRTGGWS 221 L+ LL + S ++ + S+ ++ C SSV T TC ++I+ F ST G + Sbjct: 202 LVPVLLAVISFSSILYSYFKIVSSICSISSVQGKYTAFSTCVSHLSIVFLFYSTGLGVYV 261 Query: 220 SQSAFTKSHA 191 S + SH+ Sbjct: 262 SSAVVQSSHS 271
>RAD18_ASPFU (Q4WZJ6) Postreplication repair ubiquitin-protein ligase E3 rad18| (EC 6.-.-.-) Length = 418 Score = 30.4 bits (67), Expect = 3.7 Identities = 21/77 (27%), Positives = 36/77 (46%) Frame = -3 Query: 440 LDGGNTGGVPSLQDGKIDQQAVGNQLNYSNNDLVGTSGLQRELSGGLDDIVVDMFRPDND 261 LDGG G P+ + K+DQ+ + + S ++ + T R + + +VVD D D Sbjct: 108 LDGGYVTGQPAAKKRKVDQE---DGPDASGSEGIRTRSQSRRGNSQAEPVVVDAIEDDQD 164 Query: 260 TGGIFIDTDWGLV*PVC 210 +I D + P+C Sbjct: 165 KE--YIPEDGLVACPIC 179
>RBL_NITST (Q8VQ84) Ribulose bisphosphate carboxylase large chain (EC| 4.1.1.39) (RuBisCO large subunit) Length = 473 Score = 30.0 bits (66), Expect = 4.8 Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 6/95 (6%) Frame = -3 Query: 494 NTSLPNLRIDNSIMPR------QTLDGGNTGGVPSLQDGKIDQQAVGNQLNYSNNDLVGT 333 N L N +N ++P LD G+ KI + + G+ L+ +VG Sbjct: 270 NAGLANWCRNNGMLPHVHRAMHAVLDRNPHHGIHFRVLTKILRLSGGDHLH--TGTVVGK 327 Query: 332 SGLQRELSGGLDDIVVDMFRPDNDTGGIFIDTDWG 228 R + G D++ + F P++ + GIF D DWG Sbjct: 328 LEGDRASTLGWIDLLRESFVPEDRSRGIFFDQDWG 362
>PPO2_IPOBA (Q9MB14) Polyphenol oxidase II, chloroplast precursor (EC 1.10.3.1)| (PPO-II) (Catechol oxidase II) Length = 588 Score = 30.0 bits (66), Expect = 4.8 Identities = 16/42 (38%), Positives = 21/42 (50%) Frame = +3 Query: 147 WTNQQQTPHKCGKSRAWDLVKADWLDQPPVRVDENATSIVIR 272 WT QQ GK R D +DWLD + DEN ++ +R Sbjct: 373 WTIWQQLG---GKGRRRDFTDSDWLDATFIFYDENKQAVRVR 411
>MT2_MACFA (P68303) Metallothionein-2 (MT-2) (Metallothionein-II) (MT-II)| Length = 61 Score = 30.0 bits (66), Expect = 4.8 Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 2/41 (4%) Frame = +2 Query: 443 SALA*SNCQCEGLAK--KC*CLNC*TQGCYCVPLSSLCCXQ 559 S +A +C C G K +C C +C C C P+ C Q Sbjct: 6 SCVAGDSCTCAGSCKCKECKCTSCKKSCCSCCPVGCAKCAQ 46
>MT2_CERAE (P68304) Metallothionein-2 (MT-2) (Metallothionein-II) (MT-II)| Length = 61 Score = 30.0 bits (66), Expect = 4.8 Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 2/41 (4%) Frame = +2 Query: 443 SALA*SNCQCEGLAK--KC*CLNC*TQGCYCVPLSSLCCXQ 559 S +A +C C G K +C C +C C C P+ C Q Sbjct: 6 SCVAGDSCTCAGSCKCKECKCTSCKKSCCSCCPVGCAKCAQ 46
>MT1B_HORSE (P02801) Metallothionein-1B (MT-1B) (Metallothionein-IB) (MT-IB)| Length = 61 Score = 30.0 bits (66), Expect = 4.8 Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 2/41 (4%) Frame = +2 Query: 443 SALA*SNCQCEGLAK--KC*CLNC*TQGCYCVPLSSLCCXQ 559 S +A +C C G K +C C +C C C P+ C Q Sbjct: 6 SCVAGESCTCAGSCKCKQCRCASCKKSCCSCCPVGCAKCAQ 46
>RBL_NITS1 (Q8VW94) Ribulose bisphosphate carboxylase large chain (EC| 4.1.1.39) (RuBisCO large subunit) Length = 473 Score = 29.6 bits (65), Expect = 6.3 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 6/52 (11%) Frame = -3 Query: 365 LNYSNNDLVGTSGLQRELSG------GLDDIVVDMFRPDNDTGGIFIDTDWG 228 L S D + T + +L G G D++ + F P++ + GIF D DWG Sbjct: 311 LRLSGGDHLHTGTVVGKLEGDRASTLGWIDLLRESFVPEDRSRGIFFDQDWG 362
>RBL1_THINE (O85040) Ribulose bisphosphate carboxylase large chain (EC| 4.1.1.39) (RuBisCO large subunit) Length = 473 Score = 29.6 bits (65), Expect = 6.3 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 6/52 (11%) Frame = -3 Query: 365 LNYSNNDLVGTSGLQRELSG------GLDDIVVDMFRPDNDTGGIFIDTDWG 228 L S D + T + +L G G D++ + F P++ + GIF D DWG Sbjct: 311 LRLSGGDHLHTGTVVGKLEGDRASTLGWIDLLRESFIPEDRSRGIFFDQDWG 362
>RBL_NITVU (Q59613) Ribulose bisphosphate carboxylase large chain (EC| 4.1.1.39) (RuBisCO large subunit) Length = 472 Score = 29.6 bits (65), Expect = 6.3 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 6/52 (11%) Frame = -3 Query: 365 LNYSNNDLVGTSGLQRELSG------GLDDIVVDMFRPDNDTGGIFIDTDWG 228 L S D + T + +L G G D++ + F P++ + GIF D DWG Sbjct: 311 LRLSGGDHLHTGTVVGKLEGDRASTLGWIDLLRESFVPEDRSRGIFFDQDWG 362
>RBL_NITWI (Q9XD77) Ribulose bisphosphate carboxylase large chain (EC| 4.1.1.39) (RuBisCO large subunit) Length = 473 Score = 29.3 bits (64), Expect = 8.2 Identities = 18/56 (32%), Positives = 30/56 (53%) Frame = -3 Query: 395 KIDQQAVGNQLNYSNNDLVGTSGLQRELSGGLDDIVVDMFRPDNDTGGIFIDTDWG 228 KI + + G+ L+ +VG R + G D++ + F P++ + GIF D DWG Sbjct: 309 KILRPSGGDHLH--TGTVVGKLEGDRASTLGWIDLLRESFVPEDRSRGIFFDQDWG 362
>SEPP1_RAT (P25236) Selenoprotein P precursor (SeP) [Contains: Selenoprotein| Se-P10; Selenoprotein Se-P6; Selenoprotein Se-P2; Selenoprotein Se-P1] Length = 385 Score = 29.3 bits (64), Expect = 8.2 Identities = 14/50 (28%), Positives = 19/50 (38%) Frame = +2 Query: 350 CCCN*ADYQQLADQSCHPAEREHRLYSRHPESALA*SNCQCEGLAKKC*C 499 C C ++ +SC +S+H A NC C KKC C Sbjct: 333 CSCQGLFAEEKVIESCQCRSPPAACHSQHVSPTEASPNCSCNNKTKKCKC 382
>PTP3_DICDI (P54637) Tyrosine-protein phosphatase 3 (EC 3.1.3.48)| (Protein-tyrosine-phosphate phosphohydrolase 3) Length = 989 Score = 29.3 bits (64), Expect = 8.2 Identities = 16/49 (32%), Positives = 26/49 (53%) Frame = -3 Query: 554 NSTNSREAHNSNLAFSNSGINTSLPNLRIDNSIMPRQTLDGGNTGGVPS 408 N+ N+ +N+N SNS I ++P+++ DN P +D VPS Sbjct: 172 NNNNNNNNNNNNNNNSNSNIEINVPSIQFDNE--PAMEVDSVAPLNVPS 218
>PLM_RAT (O08589) Phospholemman precursor (FXYD domain-containing ion| transport regulator 1) Length = 92 Score = 29.3 bits (64), Expect = 8.2 Identities = 11/43 (25%), Positives = 21/43 (48%) Frame = -2 Query: 171 VVSAADLSIICNCLLKVVHSSKPSSQMPFAFGFLSLAFGSVLV 43 + S + I+C CLL + + P PF + + +L G + + Sbjct: 1 MASPGHILIVCVCLLSMASAEAPQEPDPFTYDYHTLRIGGLTI 43
>MT2_STECO (P14425) Metallothionein-2 (MT-2) (Metallothionein-II) (MT-II)| Length = 61 Score = 29.3 bits (64), Expect = 8.2 Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 2/41 (4%) Frame = +2 Query: 443 SALA*SNCQCEGLAK--KC*CLNC*TQGCYCVPLSSLCCXQ 559 S A +C C G K +C C +C C C P+ C Q Sbjct: 6 SCTAGGSCACPGSCKCKECKCTSCKKSCCSCCPVGCAKCAQ 46
>MT2_PONPY (Q5NVS0) Metallothionein-2 (MT-2) (Metallothionein-II) (MT-II)| Length = 61 Score = 29.3 bits (64), Expect = 8.2 Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 2/41 (4%) Frame = +2 Query: 443 SALA*SNCQCEGLAK--KC*CLNC*TQGCYCVPLSSLCCXQ 559 S A +C C G K +C C +C C C P+ C Q Sbjct: 6 SCAAGDSCTCAGSCKCKECKCTSCKKSCCSCCPVGCAKCAQ 46
>MT2_HUMAN (P02795) Metallothionein-2 (MT-2) (Metallothionein-II) (MT-II)| (Metallothionein-2A) Length = 61 Score = 29.3 bits (64), Expect = 8.2 Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 2/41 (4%) Frame = +2 Query: 443 SALA*SNCQCEGLAK--KC*CLNC*TQGCYCVPLSSLCCXQ 559 S A +C C G K +C C +C C C P+ C Q Sbjct: 6 SCAAGDSCTCAGSCKCKECKCTSCKKSCCSCCPVGCAKCAQ 46
>MT2_CANFA (Q9XST5) Metallothionein-2 (MT-2) (Metallothionein-II) (MT-II)| Length = 61 Score = 29.3 bits (64), Expect = 8.2 Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 2/41 (4%) Frame = +2 Query: 443 SALA*SNCQCEGLAK--KC*CLNC*TQGCYCVPLSSLCCXQ 559 S A +C C G K +C C +C C C P+ C Q Sbjct: 6 SCAAGGSCTCAGSCKCKECRCTSCKKSCCSCCPVGCAKCAQ 46
>MT1A_HUMAN (P04731) Metallothionein-1A (MT-1A) (Metallothionein-IA) (MT-IA)| Length = 61 Score = 29.3 bits (64), Expect = 8.2 Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 2/35 (5%) Frame = +2 Query: 461 NCQCEGLAK--KC*CLNC*TQGCYCVPLSSLCCXQ 559 +C C G K +C C +C C C P+S C Q Sbjct: 12 SCTCTGSCKCKECKCNSCKKSCCSCCPMSCAKCAQ 46
>PMPG_CHLMU (Q9PL45) Probable outer membrane protein pmpG precursor| (Polymorphic membrane protein G) Length = 987 Score = 29.3 bits (64), Expect = 8.2 Identities = 14/45 (31%), Positives = 23/45 (51%) Frame = -3 Query: 434 GGNTGGVPSLQDGKIDQQAVGNQLNYSNNDLVGTSGLQRELSGGL 300 G GGV +++DG+ A +N++NN V G + GG+ Sbjct: 234 GNKGGGVAAVKDGQGAGGATDLSVNFANNTAVEFEGNSARIGGGI 278 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 81,064,426 Number of Sequences: 219361 Number of extensions: 1656910 Number of successful extensions: 5783 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 5572 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5780 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4757699440 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
