ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags36b13
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY589228.1| Poa compressa voucher PI 243216 clone 1 thioredox... 42 0.56
2ref|XM_414556.1| PREDICTED: Gallus gallus similar to Serine prot... 38 8.7
3emb|BX005426.16| Zebrafish DNA sequence from clone DKEY-1H24 in ... 38 8.7
4gb|AC134149.2| Homo sapiens X BAC RP11-42N20 (Roswell Park Cance... 38 8.7
5emb|AL139082.18| Human DNA sequence from clone RP11-248G5 on chr... 38 8.7
6emb|BX640501.15| Zebrafish DNA sequence from clone CH211-117O11 ... 38 8.7
7ref|XM_683796.1| PREDICTED: Danio rerio similar to Cholecystokin... 38 8.7
8emb|AJ005762.1|PVA005762 Phaseolus vulgaris DNA for retrotranspo... 38 8.7
9emb|AL929045.7| Zebrafish DNA sequence from clone CH211-159J13, ... 38 8.7
10emb|AL132666.8|CNS01DT8 Human chromosome 14 DNA sequence BAC R-1... 38 8.7

>gb|AY589228.1| Poa compressa voucher PI 243216 clone 1 thioredoxin-like protein
           (Trx) gene, partial sequence
          Length = 531

 Score = 42.1 bits (21), Expect = 0.56
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 124 catggcaacatgatgctcatc 144
           |||||||||||||||||||||
Sbjct: 460 catggcaacatgatgctcatc 440



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>ref|XM_414556.1| PREDICTED: Gallus gallus similar to Serine protease inhibitor
           Kazal-type 5 precursor (Lympho-epithelial Kazal-type
           related inhibitor) (LEKTI) (LOC416234), mRNA
          Length = 693

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 28  gagtggtgaagaagcaaac 46
           |||||||||||||||||||
Sbjct: 342 gagtggtgaagaagcaaac 360



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>emb|BX005426.16| Zebrafish DNA sequence from clone DKEY-1H24 in linkage group 1, complete
              sequence
          Length = 202018

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 98     ttaccagaagcagggcatt 116
              |||||||||||||||||||
Sbjct: 101328 ttaccagaagcagggcatt 101310



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>gb|AC134149.2| Homo sapiens X BAC RP11-42N20 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 78112

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 91    ctgcagattaccagaagcagggc 113
             ||||||||||||||| |||||||
Sbjct: 10500 ctgcagattaccagatgcagggc 10478



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>emb|AL139082.18| Human DNA sequence from clone RP11-248G5 on chromosome 13q14.3-21.1
             Contains the 5' end of the ATP7B gene for ATPase, Cu++
             transporting, beta polypeptide (Wilson disease), four
             novel genes,  the NEK3 gene for NIMA (never in mitosis
             gene a)-related kinase 3, the 3' end of a novel gene and
             five CpG islands, complete sequence
          Length = 187691

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 43    aaactatacatatactagt 61
             |||||||||||||||||||
Sbjct: 65699 aaactatacatatactagt 65717



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>emb|BX640501.15| Zebrafish DNA sequence from clone CH211-117O11 in linkage group 10,
             complete sequence
          Length = 102141

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                        
Query: 84    ctcaagcctgcagattaccagaagcag 110
             |||||||||||  ||||||||||||||
Sbjct: 86599 ctcaagcctgctaattaccagaagcag 86625



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>ref|XM_683796.1| PREDICTED: Danio rerio similar to Cholecystokinin type A receptor
           (CCK-A receptor) (CCK-AR) (Cholecystokinin-1 receptor)
           (CCK1-R) (LOC560392), mRNA
          Length = 1908

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 98  ttaccagaagcagggcatt 116
           |||||||||||||||||||
Sbjct: 240 ttaccagaagcagggcatt 258



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>emb|AJ005762.1|PVA005762 Phaseolus vulgaris DNA for retrotransposon Tpv2-6 plus flanking host
            DNA
          Length = 5846

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 149  gattaaagcgattgaccgc 167
            |||||||||||||||||||
Sbjct: 3389 gattaaagcgattgaccgc 3407



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>emb|AL929045.7| Zebrafish DNA sequence from clone CH211-159J13, complete sequence
          Length = 167619

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 98    ttaccagaagcagggcatt 116
             |||||||||||||||||||
Sbjct: 75729 ttaccagaagcagggcatt 75747



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>emb|AL132666.8|CNS01DT8 Human chromosome 14 DNA sequence BAC R-16N22 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 145250

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 94    cagattaccagaagcaggg 112
             |||||||||||||||||||
Sbjct: 45673 cagattaccagaagcaggg 45655


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,248,610
Number of Sequences: 3902068
Number of extensions: 1248610
Number of successful extensions: 79061
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 79043
Number of HSP's gapped (non-prelim): 18
length of query: 178
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 156
effective length of database: 17,147,199,772
effective search space: 2674963164432
effective search space used: 2674963164432
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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