ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags35m04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RL31_NICGU (P46290) 60S ribosomal protein L31 35 0.055
2RL312_ARATH (P51420) 60S ribosomal protein L31-2 33 0.16
3RL311_ARATH (Q9STR1) 60S ribosomal protein L31-1 33 0.21
4RL31_PICMA (O65071) 60S ribosomal protein L31 33 0.21
5RL31_PERFR (Q9M573) 60S ribosomal protein L31 30 2.3

>RL31_NICGU (P46290) 60S ribosomal protein L31|
          Length = 120

 Score = 35.0 bits (79), Expect = 0.055
 Identities = 13/18 (72%), Positives = 17/18 (94%)
 Frame = -3

Query: 183 VPQEGLKGLGTKVVEDED 130
           +P +GLKGLGTK++EDED
Sbjct: 103 IPAKGLKGLGTKIIEDED 120



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>RL312_ARATH (P51420) 60S ribosomal protein L31-2|
          Length = 119

 Score = 33.5 bits (75), Expect = 0.16
 Identities = 13/18 (72%), Positives = 16/18 (88%)
 Frame = -3

Query: 183 VPQEGLKGLGTKVVEDED 130
           +P EGL GLGTKV+E+ED
Sbjct: 102 IPAEGLSGLGTKVIEEED 119



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>RL311_ARATH (Q9STR1) 60S ribosomal protein L31-1|
          Length = 119

 Score = 33.1 bits (74), Expect = 0.21
 Identities = 12/18 (66%), Positives = 16/18 (88%)
 Frame = -3

Query: 183 VPQEGLKGLGTKVVEDED 130
           +P EGL GLGTK++E+ED
Sbjct: 102 IPAEGLSGLGTKIIEEED 119



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>RL31_PICMA (O65071) 60S ribosomal protein L31|
          Length = 120

 Score = 33.1 bits (74), Expect = 0.21
 Identities = 13/18 (72%), Positives = 16/18 (88%)
 Frame = -3

Query: 183 VPQEGLKGLGTKVVEDED 130
           VP EGL GLGTK++E+ED
Sbjct: 103 VPPEGLTGLGTKIIEEED 120



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>RL31_PERFR (Q9M573) 60S ribosomal protein L31|
          Length = 121

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 10/18 (55%), Positives = 17/18 (94%)
 Frame = -3

Query: 183 VPQEGLKGLGTKVVEDED 130
           +P+ GLKGLGT+V+++E+
Sbjct: 104 IPEGGLKGLGTQVIDEEE 121


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,618,561
Number of Sequences: 219361
Number of extensions: 365356
Number of successful extensions: 686
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 80,573,946
effective HSP length: 37
effective length of database: 72,457,589
effective search space used: 1738982136
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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