ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags36b03 |
|---|---|
| Clone Library Name | barley_pub |
>VA0D2_ARATH (Q9LHA4) Probable vacuolar ATP synthase subunit d 2 (EC 3.6.3.14)| (V-ATPase d subunit 2) (Vacuolar proton pump d subunit 2) Length = 351 Score = 155 bits (391), Expect = 9e-38 Identities = 74/88 (84%), Positives = 82/88 (93%) Frame = -2 Query: 534 VXXVMXKXPPYQSIFAKISYGESQMLDKAFYEEEVKRLRLSFEQQFHYAVFFAYMRLREQ 355 V VM K PPYQ+IF+K+SYGESQMLDKAFYEEEV+RL L+FEQQFHYAVFFAYMRLREQ Sbjct: 264 VRGVMEKYPPYQAIFSKMSYGESQMLDKAFYEEEVRRLCLAFEQQFHYAVFFAYMRLREQ 323 Query: 354 EIRNLMWISECVAQNQKNRVHDSVVTIF 271 EIRNLMWISECVAQNQK+R+HDSVV +F Sbjct: 324 EIRNLMWISECVAQNQKSRIHDSVVYMF 351
>VA0D1_ARATH (Q9LJI5) Probable vacuolar ATP synthase subunit d 1 (EC 3.6.3.14)| (V-ATPase d subunit 1) (Vacuolar proton pump d subunit 1) Length = 351 Score = 155 bits (391), Expect = 9e-38 Identities = 74/88 (84%), Positives = 82/88 (93%) Frame = -2 Query: 534 VXXVMXKXPPYQSIFAKISYGESQMLDKAFYEEEVKRLRLSFEQQFHYAVFFAYMRLREQ 355 V VM K PPYQ+IF+K+SYGESQMLDKAFYEEEV+RL L+FEQQFHYAVFFAYMRLREQ Sbjct: 264 VRGVMEKYPPYQAIFSKMSYGESQMLDKAFYEEEVRRLCLAFEQQFHYAVFFAYMRLREQ 323 Query: 354 EIRNLMWISECVAQNQKNRVHDSVVTIF 271 EIRNLMWISECVAQNQK+R+HDSVV +F Sbjct: 324 EIRNLMWISECVAQNQKSRIHDSVVYMF 351
>VA0D_DICDI (P54641) Vacuolar ATP synthase subunit d (EC 3.6.3.14) (V-ATPase d| subunit) (Vacuolar proton pump d subunit) (V-ATPase 41 kDa accessory protein) (DVA41) Length = 356 Score = 74.7 bits (182), Expect = 2e-13 Identities = 32/84 (38%), Positives = 56/84 (66%) Frame = -2 Query: 534 VXXVMXKXPPYQSIFAKISYGESQMLDKAFYEEEVKRLRLSFEQQFHYAVFFAYMRLREQ 355 V ++ Y++ F+ + L+ +F+E EV R++FE Q+ Y VF+AY++LREQ Sbjct: 271 VRGILEVYSTYRNFFSD-GVNNEKSLEDSFFEHEVHLNRMAFEDQYGYGVFYAYIKLREQ 329 Query: 354 EIRNLMWISECVAQNQKNRVHDSV 283 EIRN++WI+EC++QN K +++ + Sbjct: 330 EIRNIVWIAECISQNMKQKMNQYI 353
>VA0D_NEUCR (P53659) Vacuolar ATP synthase subunit d (EC 3.6.3.14) (V-ATPase d| subunit) (Vacuolar proton pump d subunit) (V-ATPase 41 kDa subunit) Length = 364 Score = 74.3 bits (181), Expect = 2e-13 Identities = 29/63 (46%), Positives = 51/63 (80%) Frame = -2 Query: 471 ESQMLDKAFYEEEVKRLRLSFEQQFHYAVFFAYMRLREQEIRNLMWISECVAQNQKNRVH 292 E + L+ FY++E++ +++F +QF YA+ +A+++LREQEIRN+ WI+EC+AQNQK R++ Sbjct: 299 EGKSLEDMFYQKEMEISKMAFTRQFTYAIVYAWVKLREQEIRNITWIAECIAQNQKERIN 358 Query: 291 DSV 283 + + Sbjct: 359 NYI 361
>VA0D_SCHPO (O13753) Vacuolar ATP synthase subunit d (EC 3.6.3.14) (V-ATPase d| subunit) (Vacuolar proton pump d subunit) (V-ATPase 39 kDa subunit) (V-ATPase subunit M39) Length = 343 Score = 73.6 bits (179), Expect = 3e-13 Identities = 31/54 (57%), Positives = 45/54 (83%) Frame = -2 Query: 459 LDKAFYEEEVKRLRLSFEQQFHYAVFFAYMRLREQEIRNLMWISECVAQNQKNR 298 LD F E+EV+ +L+F QQFHY + +A+++LREQEIRNL WI+EC++QNQ++R Sbjct: 282 LDDHFNEKEVELNKLAFLQQFHYGIVYAFLKLREQEIRNLTWIAECISQNQRDR 335
>VA0D_PONPY (Q5R6I1) Vacuolar ATP synthase subunit d (EC 3.6.3.14) (V-ATPase d| subunit) (Vacuolar proton pump d subunit) Length = 351 Score = 71.2 bits (173), Expect = 2e-12 Identities = 36/90 (40%), Positives = 60/90 (66%), Gaps = 2/90 (2%) Frame = -2 Query: 534 VXXVMXKXPPYQSIF--AKISYGESQMLDKAFYEEEVKRLRLSFEQQFHYAVFFAYMRLR 361 V V P Y+ +F A + G+ + D+ F+E EVK +L+F QFH+ VF+A+++L+ Sbjct: 264 VKNVADYYPEYKLLFEGAGSNPGDKTLEDR-FFEHEVKLNKLAFLNQFHFGVFYAFVKLK 322 Query: 360 EQEIRNLMWISECVAQNQKNRVHDSVVTIF 271 EQE RN++WI+EC+AQ + ++ D+ + IF Sbjct: 323 EQECRNIVWIAECIAQRHRAKI-DNYIPIF 351
>VA0D_MOUSE (P51863) Vacuolar ATP synthase subunit d (EC 3.6.3.14) (V-ATPase d| subunit) (Vacuolar proton pump d subunit) (V-ATPase AC39 subunit) (V-ATPase 40 kDa accessory protein) (P39) (Physophilin) Length = 351 Score = 71.2 bits (173), Expect = 2e-12 Identities = 36/90 (40%), Positives = 60/90 (66%), Gaps = 2/90 (2%) Frame = -2 Query: 534 VXXVMXKXPPYQSIF--AKISYGESQMLDKAFYEEEVKRLRLSFEQQFHYAVFFAYMRLR 361 V V P Y+ +F A + G+ + D+ F+E EVK +L+F QFH+ VF+A+++L+ Sbjct: 264 VKNVADYYPEYKLLFEGAGSNPGDKTLEDR-FFEHEVKLNKLAFLNQFHFGVFYAFVKLK 322 Query: 360 EQEIRNLMWISECVAQNQKNRVHDSVVTIF 271 EQE RN++WI+EC+AQ + ++ D+ + IF Sbjct: 323 EQECRNIVWIAECIAQRHRAKI-DNYIPIF 351
>VA0D_HUMAN (P61421) Vacuolar ATP synthase subunit d (EC 3.6.3.14) (V-ATPase d| subunit) (Vacuolar proton pump d subunit) (V-ATPase AC39 subunit) (V-ATPase 40 kDa accessory protein) (P39) (32 kDa accessory protein) Length = 351 Score = 71.2 bits (173), Expect = 2e-12 Identities = 36/90 (40%), Positives = 60/90 (66%), Gaps = 2/90 (2%) Frame = -2 Query: 534 VXXVMXKXPPYQSIF--AKISYGESQMLDKAFYEEEVKRLRLSFEQQFHYAVFFAYMRLR 361 V V P Y+ +F A + G+ + D+ F+E EVK +L+F QFH+ VF+A+++L+ Sbjct: 264 VKNVADYYPEYKLLFEGAGSNPGDKTLEDR-FFEHEVKLNKLAFLNQFHFGVFYAFVKLK 322 Query: 360 EQEIRNLMWISECVAQNQKNRVHDSVVTIF 271 EQE RN++WI+EC+AQ + ++ D+ + IF Sbjct: 323 EQECRNIVWIAECIAQRHRAKI-DNYIPIF 351
>VA0D_BOVIN (P61420) Vacuolar ATP synthase subunit d (EC 3.6.3.14) (V-ATPase d| subunit) (Vacuolar proton pump d subunit) (V-ATPase AC39 subunit) (V-ATPase 40 kDa accessory protein) (P39) (32 kDa accessory protein) Length = 351 Score = 71.2 bits (173), Expect = 2e-12 Identities = 36/90 (40%), Positives = 60/90 (66%), Gaps = 2/90 (2%) Frame = -2 Query: 534 VXXVMXKXPPYQSIF--AKISYGESQMLDKAFYEEEVKRLRLSFEQQFHYAVFFAYMRLR 361 V V P Y+ +F A + G+ + D+ F+E EVK +L+F QFH+ VF+A+++L+ Sbjct: 264 VKNVADYYPEYKLLFEGAGSNPGDKTLEDR-FFEHEVKLNKLAFLNQFHFGVFYAFVKLK 322 Query: 360 EQEIRNLMWISECVAQNQKNRVHDSVVTIF 271 EQE RN++WI+EC+AQ + ++ D+ + IF Sbjct: 323 EQECRNIVWIAECIAQRHRAKI-DNYIPIF 351
>VA0D1_DROME (Q9W4P5) Vacuolar ATP synthase subunit d 1 (EC 3.6.3.14) (V-ATPase| d subunit 1) (Vacuolar proton pump d subunit 1) (V-ATPase 39 kDa subunit 1) Length = 350 Score = 70.1 bits (170), Expect = 4e-12 Identities = 33/68 (48%), Positives = 50/68 (73%) Frame = -2 Query: 474 GESQMLDKAFYEEEVKRLRLSFEQQFHYAVFFAYMRLREQEIRNLMWISECVAQNQKNRV 295 G+ + DK F+E EVK +F QQFH+ VF+AY++L+EQE RN++WI+ECVAQ + ++ Sbjct: 285 GDKTLEDK-FFEHEVKLDVYAFLQQFHFGVFYAYLKLKEQECRNIVWIAECVAQKHRAKI 343 Query: 294 HDSVVTIF 271 D+ + IF Sbjct: 344 -DNYIPIF 350
>VA0D_MANSE (Q25531) Vacuolar ATP synthase subunit d (EC 3.6.3.14) (V-ATPase d| subunit) (Vacuolar proton pump d subunit) (V-ATPase 40 kDa subunit) (M40) Length = 348 Score = 68.6 bits (166), Expect = 1e-11 Identities = 35/80 (43%), Positives = 55/80 (68%), Gaps = 2/80 (2%) Frame = -2 Query: 504 YQSIF--AKISYGESQMLDKAFYEEEVKRLRLSFEQQFHYAVFFAYMRLREQEIRNLMWI 331 Y ++F A + G+ + DK F+E EV +F QQFH+ VF++Y++L+EQE RN++WI Sbjct: 271 YSALFEGAGNNVGDKTLEDK-FFEHEVNLNVHAFLQQFHFGVFYSYLKLKEQECRNIVWI 329 Query: 330 SECVAQNQKNRVHDSVVTIF 271 SECVAQ + ++ D+ + IF Sbjct: 330 SECVAQKHRAKI-DNYIPIF 348
>VA0D_YEAST (P32366) Vacuolar ATP synthase subunit d (EC 3.6.3.14) (V-ATPase d| subunit) (Vacuolar proton pump d subunit) (V-ATPase 39 kDa subunit) (V-ATPase subunit M39) Length = 345 Score = 62.8 bits (151), Expect = 6e-10 Identities = 26/63 (41%), Positives = 46/63 (73%) Frame = -2 Query: 471 ESQMLDKAFYEEEVKRLRLSFEQQFHYAVFFAYMRLREQEIRNLMWISECVAQNQKNRVH 292 E+ L+ FY+ E++ R +F QQF + +A+M+ +EQE+RN+ WI+EC+AQNQ+ R++ Sbjct: 280 ETGNLEDHFYQLEMELCRDAFTQQFAISTVWAWMKSKEQEVRNITWIAECIAQNQRERIN 339 Query: 291 DSV 283 + + Sbjct: 340 NYI 342
>VA0D2_DROME (Q9VCQ3) Probable vacuolar ATP synthase subunit d 2 (EC 3.6.3.14)| (V-ATPase d subunit 2) (Vacuolar proton pump d subunit 2) (V-ATPase 39 kDa subunit 2) Length = 350 Score = 59.7 bits (143), Expect = 5e-09 Identities = 22/56 (39%), Positives = 42/56 (75%) Frame = -2 Query: 459 LDKAFYEEEVKRLRLSFEQQFHYAVFFAYMRLREQEIRNLMWISECVAQNQKNRVH 292 L+ F E K+ +F QQ+H+ +F+++++L++ E+RN++WISEC+AQ Q +R++ Sbjct: 287 LEDRFLMMEAKKNVQTFLQQYHFGIFYSFIKLKQLEVRNIVWISECIAQRQTDRIN 342
>HMCT_BOMMO (P98092) Hemocytin precursor (Humoral lectin)| Length = 3133 Score = 32.3 bits (72), Expect = 0.87 Identities = 18/56 (32%), Positives = 25/56 (44%) Frame = +3 Query: 291 HGPCSSGSGQRIRRSTSSSLSPALVASCTQRKQHSGTAVRMTGAASLLPPHRRPCP 458 HG C SG+ + T S C Q ++SG +VR+T + PHR P Sbjct: 3017 HGSCDSGTIYNNQTGTHES-----ACECCQAAKYSGVSVRLTCEDGTVRPHRVATP 3067
>LMO6_HUMAN (O43900) LIM domain only protein 6 (Triple LIM domain protein 6)| Length = 615 Score = 30.0 bits (66), Expect = 4.3 Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 1/67 (1%) Frame = +3 Query: 270 KRSSRRCHGPCSSGSGQRIRRSTSSSLSPALVASCTQRKQHSGTAVRMTGAASLLPPHR- 446 + SRR H C +GSG S S S S + +S ++ + G G LPPH Sbjct: 524 RHPSRRRHYQCDAGSG-----SDSESCSSSPSSSSSESSEDDGF---FLGERIPLPPHLC 575 Query: 447 RPCPTSD 467 RP P D Sbjct: 576 RPMPAQD 582
>TUP1_YEAST (P16649) Glucose repression regulatory protein TUP1 (Flocculation| suppressor protein) (Repressor AER2) Length = 713 Score = 29.6 bits (65), Expect = 5.6 Identities = 13/34 (38%), Positives = 19/34 (55%) Frame = -2 Query: 453 KAFYEEEVKRLRLSFEQQFHYAVFFAYMRLREQE 352 K YEEE+K L+L EQ+ H + R+Q+ Sbjct: 70 KDAYEEEIKHLKLGLEQRDHQIASLTVQQQRQQQ 103
>Y3550_ARATH (Q9MA63) Protein At3g05500| Length = 246 Score = 29.6 bits (65), Expect = 5.6 Identities = 18/72 (25%), Positives = 35/72 (48%) Frame = +1 Query: 187 ELIKSAIDCAIIKAGLLYSHMHSNRGRLKDRHDAVMDPVLLVLGNAFGDPHQVPYLLLS* 366 + +++A A+++ L+Y+ G LK ++V V V+G + H VP +L Sbjct: 26 QFVQAAAVEALLRFALIYAKAKDKSGPLKPGVESVEGAVKTVVGPVYEKYHDVPVEVLKY 85 Query: 367 PHVRKENSIVEL 402 + + S+ EL Sbjct: 86 MDQKVDMSVTEL 97
>MET2_ASCIM (P12917) Homoserine O-acetyltransferase (EC 2.3.1.31) (Homoserine| O-trans-acetylase) Length = 518 Score = 29.3 bits (64), Expect = 7.4 Identities = 21/68 (30%), Positives = 27/68 (39%), Gaps = 4/68 (5%) Frame = +3 Query: 270 KRSSRRCHGPCSSGSGQRIRRSTSSSLSPALVASCT----QRKQHSGTAVRMTGAASLLP 437 ++ RR S R S++SS AS T R Q SG A + Sbjct: 305 RKGFRRSSTTTSDAPPSPTRTSSTSSTDAITPASTTPLHPSRAQPSGIATPPNSVSDPFR 364 Query: 438 PHRRPCPT 461 P +RPCPT Sbjct: 365 PVKRPCPT 372
>IRAK1_HUMAN (P51617) Interleukin-1 receptor-associated kinase 1 (EC 2.7.11.1)| (IRAK-1) Length = 712 Score = 29.3 bits (64), Expect = 7.4 Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 1/55 (1%) Frame = +3 Query: 312 SGQRIRRSTSSSLSPALVASCTQRKQHSGTAVRMTGA-ASLLPPHRRPCPTSDFP 473 S +++ S S+ LSPA S T HSG + + + ASL PP P P+S P Sbjct: 131 SPRKLPSSASTFLSPAFPGSQT----HSGPELGLVPSPASLWPPPPSPAPSSTKP 181
>ZN265_HUMAN (O95218) Zinc finger protein 265 (Zinc finger, splicing)| Length = 337 Score = 28.9 bits (63), Expect = 9.6 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 1/60 (1%) Frame = +3 Query: 273 RSSRRCHGPCSSGSGQRIRRSTSSSLSPALVASCTQRKQHSGTAVRMTG-AASLLPPHRR 449 RSS R P SS S R R +SSS +S +R + G+ R + + L PH + Sbjct: 212 RSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSKSRSSSRSTGALLPHEK 271
>GPMI_MYCHO (Q6Y8Q8) 2,3-bisphosphoglycerate-independent phosphoglycerate| mutase (EC 5.4.2.1) (Phosphoglyceromutase) (BPG-independent PGAM) (iPGM) Length = 499 Score = 28.9 bits (63), Expect = 9.6 Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 3/45 (6%) Frame = -2 Query: 504 YQSIFAKISYGESQM---LDKAFYEEEVKRLRLSFEQQFHYAVFF 379 Y+ I +KI++ E ++ L K ++K+LRL+ Q++ + FF Sbjct: 289 YEGINSKIAFKEMEVVNPLGKVLESNDIKQLRLAETQKYAHVTFF 333 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 78,600,802 Number of Sequences: 219361 Number of extensions: 1602433 Number of successful extensions: 4228 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 4114 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4224 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4258037034 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
