ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags36b01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK100460.1| Oryza sativa (japonica cultivar-group) cDNA clon... 281 1e-72
2ref|NM_192811.1| Oryza sativa (japonica cultivar-group), predic... 274 3e-70
3gb|AY105958.1| Zea mays PCO114043 mRNA sequence 256 7e-65
4gb|AY109071.1| Zea mays PCO122073 mRNA sequence 196 5e-47
5dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 192 8e-46
6dbj|AP003328.3| Oryza sativa (japonica cultivar-group) genomic D... 192 8e-46
7dbj|AP002897.2| Oryza sativa (japonica cultivar-group) genomic D... 72 2e-09
8ref|NM_196521.1| Oryza sativa (japonica cultivar-group) putative... 52 0.002
9dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
10gb|AC027658.1| Oryza sativa (japonica cultivar-group) BAC nbxb00... 52 0.002
11dbj|AK099316.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.002
12dbj|AK064344.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.002
13gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 52 0.002
14gb|BC040395.1| Mus musculus forkhead box J2, mRNA (cDNA clone MG... 46 0.12
15gb|AC157930.7| Mus musculus chromosome 5, clone RP24-151E22, com... 46 0.12
16gb|AC163108.5| Mus musculus BAC clone RP23-46L17 from chromosome... 46 0.12
17ref|NM_021899.2| Mus musculus forkhead box J2 (Foxj2), mRNA 46 0.12
18gb|AC102477.18| Mus musculus chromosome 5, clone RP24-405C17, co... 46 0.12
19dbj|AB221666.1| Mus musculus cDNA pooled tissues:(tissue_type=br... 46 0.12
20gb|AF253052.1|AF253052 Mus musculus fork head transcription fact... 46 0.12
21ref|XM_578387.1| PREDICTED: Rattus norvegicus similar to fork he... 46 0.12
22ref|NM_001031451.1| Gallus gallus FYN binding protein (FYB-120/1... 44 0.48
23emb|AJ720995.1| Gallus gallus mRNA for hypothetical protein, clo... 44 0.48
24gb|AC159092.11| Mus musculus chromosome 1, clone RP23-103C13, co... 42 1.9
25gb|AC114986.13| Mus musculus chromosome 1, clone RP23-242G7, com... 42 1.9
26ref|XM_544750.2| PREDICTED: Canis familiaris similar to acheron ... 42 1.9
27gb|AC122230.4| Mus musculus BAC clone RP23-133F23 from 9, comple... 42 1.9
28dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, compl... 42 1.9
29gb|AC139378.4| Mus musculus BAC clone RP23-265F20 from 9, comple... 42 1.9
30emb|AL772323.8| Mouse DNA sequence from clone RP23-370F9 on chro... 42 1.9
31gb|AC140465.2| Mus musculus BAC clone RP24-389J3 from chromosome... 40 7.5
32ref|NM_018357.2| Homo sapiens La ribonucleoprotein domain family... 40 7.5
33ref|XM_726134.1| Plasmodium yoelii yoelii str. 17XNL origin reco... 40 7.5
34ref|XM_668171.1| Plasmodium berghei strain ANKA hypothetical pro... 40 7.5
35emb|AL139093.11| Human DNA sequence from clone RP11-440J4 on chr... 40 7.5
36ref|XM_964220.1| PREDICTED: Tribolium castaneum similar to CG400... 40 7.5
37gb|BC014018.2| Homo sapiens La ribonucleoprotein domain family, ... 40 7.5
38emb|AL833876.1|HSM805170 Homo sapiens mRNA; cDNA DKFZp762N186 (f... 40 7.5
39emb|CR592697.1| full-length cDNA clone CS0DF010YN23 of Fetal bra... 40 7.5
40dbj|AK002058.1| Homo sapiens cDNA FLJ11196 fis, clone PLACE10076... 40 7.5
41gb|AC090868.4| Homo sapiens chromosome 15, clone RP11-795G3, com... 40 7.5
42gb|BC009446.1| Homo sapiens La ribonucleoprotein domain family, ... 40 7.5
43gb|BC006082.1| Homo sapiens La ribonucleoprotein domain family, ... 40 7.5
44gb|AC010859.5| Homo sapiens chromosome , clone RP11-3D19, comple... 40 7.5
45gb|AY014830.1| Mus musculus lysyl hydroxylase 3 (Plod3) gene, co... 40 7.5
46gb|AC154505.3| Mus musculus BAC clone RP24-92J14 from chromosome... 40 7.5
47gb|AC009269.6|AC009269 Homo sapiens chromosome 15, clone RP11-13... 40 7.5
48gb|AC117469.3| Homo sapiens 3 BAC RP11-513G11 (Roswell Park Canc... 40 7.5
49gb|AC015912.16| Homo sapiens chromosome 17, clone RP11-670E13, c... 40 7.5
50gb|AC106858.12| Homo sapiens chromosome 17, clone RP11-347L15, c... 40 7.5
51gb|AF443829.1| Homo sapiens acheron mRNA, complete cds 40 7.5
52gb|AF443828.1| Homo sapiens acheron mRNA, complete cds 40 7.5
53dbj|AK130092.1| Homo sapiens cDNA FLJ26582 fis, clone LNF07059 40 7.5
54dbj|AP006278.1| Homo sapiens genomic DNA, chromosome 8q22.1, clo... 40 7.5
55gb|AC174772.1| Gasterosteus aculeatus clone VMRC28-84K14, comple... 40 7.5
56emb|AL590449.1|CNS07EGG chromosome X of strain GB-M1 of Encephal... 40 7.5
57gb|AC147987.5| Mus musculus BAC clone RP24-456B4 from 5, complet... 40 7.5
58gb|AC147986.3| Mus musculus BAC clone RP24-404L1 from 5, complet... 40 7.5
59emb|CT025549.13| Mouse DNA sequence from clone RP24-235K10 on ch... 40 7.5
60emb|AL645911.14| Mouse DNA sequence from clone RP23-25M3 on chro... 40 7.5 
>dbj|AK100460.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023091N11, full
            insert sequence
          Length = 1327

 Score =  281 bits (142), Expect = 1e-72
 Identities = 286/334 (85%)
 Strand = Plus / Minus

                                                                        
Query: 215  ttttttagtttcacttcttcggcgtatctgcataattccaggtgaatttcgcaaatgaag 274
            |||||||| || ||||||| ||||| || ||||| ||||||||| | |  |||||||| |
Sbjct: 1149 ttttttagctttacttctttggcgtgtcagcatacttccaggtgtaatgtgcaaatgagg 1090

                                                                        
Query: 275  tatattgccttccaccggccacatcttcttcgcgtatctcattgctaatctctttgaggt 334
            |||| || |||||||| || |||||||||||||||| ||   |    |||||||| ||||
Sbjct: 1089 tatactgtcttccaccagcgacatcttcttcgcgtacctggctagagatctctttcaggt 1030

                                                                        
Query: 335  catcttctgtgagcttcacctttaaggagtcaatattggagtctagattcttgatcttag 394
            |||| || ||||| |||||||||||||||||||| ||||  ||||| || || ||||| |
Sbjct: 1029 catcatccgtgaggttcacctttaaggagtcaatgttggcatctaggttttttatcttgg 970

                                                                        
Query: 395  ttgtccctggtatcggaaccacatcatccccttgatgcagaacccaggctaaagctagct 454
            |||| |||||||| || |||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 969  ttgttcctggtattgggaccacatcatccccttgatgaagaacccaagctaaagctagct 910

                                                                        
Query: 455  gagcagggctgcaatggtgcttcttggccagttcttccattttcagataaagttgcttgt 514
            ||||||||||||| ||||||||||||||||| |||||| ||||||||||||| || || |
Sbjct: 909  gagcagggctgcactggtgcttcttggccagctcttccgttttcagataaagctgtttat 850

                                              
Query: 515  tcttctccaggttttcagcagaaaaacgtggatg 548
            |||||||||  |||||||||||||| ||||||||
Sbjct: 849  tcttctccaaattttcagcagaaaatcgtggatg 816
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>ref|NM_192811.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 888

 Score =  274 bits (138), Expect = 3e-70
 Identities = 276/322 (85%)
 Strand = Plus / Minus

                                                                       
Query: 227 acttcttcggcgtatctgcataattccaggtgaatttcgcaaatgaagtatattgccttc 286
           ||||||| ||||| || ||||| ||||||||| | |  |||||||| ||||| || ||||
Sbjct: 886 acttctttggcgtgtcagcatacttccaggtgtaatgtgcaaatgaggtatactgtcttc 827

                                                                       
Query: 287 caccggccacatcttcttcgcgtatctcattgctaatctctttgaggtcatcttctgtga 346
           |||| || |||||||||||||||| ||   |    |||||||| |||||||| || ||||
Sbjct: 826 caccagcgacatcttcttcgcgtacctggctagagatctctttcaggtcatcatccgtga 767

                                                                       
Query: 347 gcttcacctttaaggagtcaatattggagtctagattcttgatcttagttgtccctggta 406
           | |||||||||||||||||||| ||||  ||||| || || ||||| ||||| |||||||
Sbjct: 766 ggttcacctttaaggagtcaatgttggcatctaggttttttatcttggttgttcctggta 707

                                                                       
Query: 407 tcggaaccacatcatccccttgatgcagaacccaggctaaagctagctgagcagggctgc 466
           | || |||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct: 706 ttgggaccacatcatccccttgatgaagaacccaagctaaagctagctgagcagggctgc 647

                                                                       
Query: 467 aatggtgcttcttggccagttcttccattttcagataaagttgcttgttcttctccaggt 526
           | ||||||||||||||||| |||||| ||||||||||||| || || ||||||||||  |
Sbjct: 646 actggtgcttcttggccagctcttccgttttcagataaagctgtttattcttctccaaat 587

                                 
Query: 527 tttcagcagaaaaacgtggatg 548
           ||||||||||||| ||||||||
Sbjct: 586 tttcagcagaaaatcgtggatg 565
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>gb|AY105958.1| Zea mays PCO114043 mRNA sequence
          Length = 1434

 Score =  256 bits (129), Expect = 7e-65
 Identities = 256/297 (86%), Gaps = 1/297 (0%)
 Strand = Plus / Minus

                                                                        
Query: 228  cttcttcggcgtatctgcataattccaggtgaatttcgcaaatgaagtatattgccttcc 287
            |||||| |||||||| || || |||||||||   |  |||||||||||  |||| |||||
Sbjct: 1115 cttctttggcgtatcagcgtacttccaggtggtatgtgcaaatgaagtgaattgtcttcc 1056

                                                                        
Query: 288  accggccacatcttcttcgcgtatctcattgctaatctctttgaggtcatcttctgtgag 347
            ||| |||||||||||||| |||||||   |||  || ||||| || || || ||||| ||
Sbjct: 1055 accagccacatcttcttcccgtatctggctgcccatttctttcagatcttcgtctgtcag 996

                                                                        
Query: 348  cttcacctttaaggagtcaatattggagtctagattcttgatcttag-ttgtccctggta 406
             |||||||| ||||||||||| ||||| |||||||||||||| || | ||||||||||||
Sbjct: 995  tttcaccttcaaggagtcaatgttggaatctagattcttgattttgggttgtccctggta 936

                                                                        
Query: 407  tcggaaccacatcatccccttgatgcagaacccaggctaaagctagctgagcagggctgc 466
            | |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 935  taggaaccacatcatctccttgatgcagaacccatgctaaagctagctgagcagggctgc 876

                                                                     
Query: 467  aatggtgcttcttggccagttcttccattttcagataaagttgcttgttcttctcca 523
            | |||||||| ||||||||||||||||||  || ||||| |||||||||||||||||
Sbjct: 875  actggtgcttattggccagttcttccattcgcaaataaatttgcttgttcttctcca 819
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>gb|AY109071.1| Zea mays PCO122073 mRNA sequence
          Length = 1331

 Score =  196 bits (99), Expect = 5e-47
 Identities = 210/247 (85%)
 Strand = Plus / Minus

                                                                        
Query: 277  tattgccttccaccggccacatcttcttcgcgtatctcattgctaatctctttgaggtca 336
            ||||| |||||||| |||||||||||| | |||||||   ||| ||| || || ||||| 
Sbjct: 1123 tattgtcttccaccagccacatcttctgcacgtatctggctgccaatttccttcaggtcc 1064

                                                                        
Query: 337  tcttctgtgagcttcacctttaaggagtcaatattggagtctagattcttgatcttagtt 396
            ||  |||||||||||||||| ||||||||||  ||||  ||||| |||||  | || |||
Sbjct: 1063 tcagctgtgagcttcaccttcaaggagtcaacgttggcatctaggttcttcgtttttgtt 1004

                                                                        
Query: 397  gtccctggtatcggaaccacatcatccccttgatgcagaacccaggctaaagctagctga 456
            ||||||||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct: 1003 gtccctggtataggaaccacatcatccccttgacgcagaacccaggctagagctagctga 944

                                                                        
Query: 457  gcagggctgcaatggtgcttcttggccagttcttccattttcagataaagttgcttgttc 516
            || |||||||| |||| |||||| ||||  ||||| |||||||| ||||  |||||||||
Sbjct: 943  gctgggctgcactggtacttcttcgccaaatcttctattttcaggtaaatctgcttgttc 884

                   
Query: 517  ttctcca 523
            |||||||
Sbjct: 883  ttctcca 877
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  192 bits (97), Expect = 8e-46
 Identities = 136/149 (91%)
 Strand = Plus / Plus

                                                                            
Query: 400      cctggtatcggaaccacatcatccccttgatgcagaacccaggctaaagctagctgagca 459
                |||||||| || |||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct: 24576720 cctggtattgggaccacatcatccccttgatgaagaacccaagctaaagctagctgagca 24576779

                                                                            
Query: 460      gggctgcaatggtgcttcttggccagttcttccattttcagataaagttgcttgttcttc 519
                |||||||| ||||||||||||||||| |||||| ||||||||||||| || || ||||||
Sbjct: 24576780 gggctgcactggtgcttcttggccagctcttccgttttcagataaagctgtttattcttc 24576839

                                             
Query: 520      tccaggttttcagcagaaaaacgtggatg 548
                ||||  |||||||||||||| ||||||||
Sbjct: 24576840 tccaaattttcagcagaaaatcgtggatg 24576868



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 154/189 (81%)
 Strand = Plus / Plus

                                                                            
Query: 215      ttttttagtttcacttcttcggcgtatctgcataattccaggtgaatttcgcaaatgaag 274
                |||||||| || ||||||| ||||| || ||||| ||||||||| | |  |||||||| |
Sbjct: 24575936 ttttttagctttacttctttggcgtgtcagcatacttccaggtgtaatgtgcaaatgagg 24575995

                                                                            
Query: 275      tatattgccttccaccggccacatcttcttcgcgtatctcattgctaatctctttgaggt 334
                |||| || |||||||| || |||||||||||||||| ||   |    |||||||| ||||
Sbjct: 24575996 tatactgtcttccaccagcgacatcttcttcgcgtacctggctagagatctctttcaggt 24576055

                                                                            
Query: 335      catcttctgtgagcttcacctttaaggagtcaatattggagtctagattcttgatcttag 394
                |||| || ||||| |||||||||||||||||||| ||||  ||||| || || ||||| |
Sbjct: 24576056 catcatccgtgaggttcacctttaaggagtcaatgttggcatctaggttttttatcttgg 24576115

                         
Query: 395      ttgtccctg 403
                |||| ||||
Sbjct: 24576116 ttgttcctg 24576124
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>dbj|AP003328.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
            clone:B1040D09
          Length = 148102

 Score =  192 bits (97), Expect = 8e-46
 Identities = 136/149 (91%)
 Strand = Plus / Plus

                                                                        
Query: 400  cctggtatcggaaccacatcatccccttgatgcagaacccaggctaaagctagctgagca 459
            |||||||| || |||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct: 2683 cctggtattgggaccacatcatccccttgatgaagaacccaagctaaagctagctgagca 2742

                                                                        
Query: 460  gggctgcaatggtgcttcttggccagttcttccattttcagataaagttgcttgttcttc 519
            |||||||| ||||||||||||||||| |||||| ||||||||||||| || || ||||||
Sbjct: 2743 gggctgcactggtgcttcttggccagctcttccgttttcagataaagctgtttattcttc 2802

                                         
Query: 520  tccaggttttcagcagaaaaacgtggatg 548
            ||||  |||||||||||||| ||||||||
Sbjct: 2803 tccaaattttcagcagaaaatcgtggatg 2831



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 154/189 (81%)
 Strand = Plus / Plus

                                                                        
Query: 215  ttttttagtttcacttcttcggcgtatctgcataattccaggtgaatttcgcaaatgaag 274
            |||||||| || ||||||| ||||| || ||||| ||||||||| | |  |||||||| |
Sbjct: 1899 ttttttagctttacttctttggcgtgtcagcatacttccaggtgtaatgtgcaaatgagg 1958

                                                                        
Query: 275  tatattgccttccaccggccacatcttcttcgcgtatctcattgctaatctctttgaggt 334
            |||| || |||||||| || |||||||||||||||| ||   |    |||||||| ||||
Sbjct: 1959 tatactgtcttccaccagcgacatcttcttcgcgtacctggctagagatctctttcaggt 2018

                                                                        
Query: 335  catcttctgtgagcttcacctttaaggagtcaatattggagtctagattcttgatcttag 394
            |||| || ||||| |||||||||||||||||||| ||||  ||||| || || ||||| |
Sbjct: 2019 catcatccgtgaggttcacctttaaggagtcaatgttggcatctaggttttttatcttgg 2078

                     
Query: 395  ttgtccctg 403
            |||| ||||
Sbjct: 2079 ttgttcctg 2087
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>dbj|AP002897.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0686E09
          Length = 156425

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 81/96 (84%)
 Strand = Plus / Plus

                                                                          
Query: 215    ttttttagtttcacttcttcggcgtatctgcataattccaggtgaatttcgcaaatgaag 274
              |||||||| || ||||||| ||||| || ||||| ||||||||| | |  |||||||| |
Sbjct: 156320 ttttttagctttacttctttggcgtgtcagcatacttccaggtgtaatgtgcaaatgagg 156379

                                                  
Query: 275    tatattgccttccaccggccacatcttcttcgcgta 310
              |||| || |||||||| || ||||||||||||||||
Sbjct: 156380 tatactgtcttccaccagcgacatcttcttcgcgta 156415
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>ref|NM_196521.1| Oryza sativa (japonica cultivar-group) putative polyprotein
           (OSJNBa0006I13.8), mRNA
          Length = 1305

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                             
Query: 409 ggaaccacatcatccccttgatgcagaacccagg 442
           ||||| ||||||||||||||||| ||||||||||
Sbjct: 839 ggaacaacatcatccccttgatgaagaacccagg 806
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                                  
Query: 409      ggaaccacatcatccccttgatgcagaacccagg 442
                ||||| ||||||||||||||||| ||||||||||
Sbjct: 14220328 ggaacaacatcatccccttgatgaagaacccagg 14220295
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>gb|AC027658.1| Oryza sativa (japonica cultivar-group) BAC nbxb0006I13 chromosome 10,
             complete sequence
          Length = 142737

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                               
Query: 409   ggaaccacatcatccccttgatgcagaacccagg 442
             ||||| ||||||||||||||||| ||||||||||
Sbjct: 92401 ggaacaacatcatccccttgatgaagaacccagg 92368
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>dbj|AK099316.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023145C18, full
           insert sequence
          Length = 1334

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                             
Query: 409 ggaaccacatcatccccttgatgcagaacccagg 442
           ||||| ||||||||||||||||| ||||||||||
Sbjct: 920 ggaacaacatcatccccttgatgaagaacccagg 887
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>dbj|AK064344.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-107-H09, full
           insert sequence
          Length = 1355

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                             
Query: 409 ggaaccacatcatccccttgatgcagaacccagg 442
           ||||| ||||||||||||||||| ||||||||||
Sbjct: 935 ggaacaacatcatccccttgatgaagaacccagg 902
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                                  
Query: 409      ggaaccacatcatccccttgatgcagaacccagg 442
                ||||| ||||||||||||||||| ||||||||||
Sbjct: 14228570 ggaacaacatcatccccttgatgaagaacccagg 14228537
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>gb|BC040395.1| Mus musculus forkhead box J2, mRNA (cDNA clone MGC:28510
            IMAGE:4190087), complete cds
          Length = 4677

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 353  cctttaaggagtcaatattggag 375
            |||||||||||||||||||||||
Sbjct: 1671 cctttaaggagtcaatattggag 1649
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>gb|AC157930.7| Mus musculus chromosome 5, clone RP24-151E22, complete sequence
          Length = 146346

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                             
Query: 339    ttctgtgagcttcacctttaaggagtcaata 369
              |||||||| ||| ||||||||||||||||||
Sbjct: 114836 ttctgtgaccttgacctttaaggagtcaata 114866
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>gb|AC163108.5| Mus musculus BAC clone RP23-46L17 from chromosome 6, complete sequence
          Length = 234330

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 353   cctttaaggagtcaatattggag 375
             |||||||||||||||||||||||
Sbjct: 27905 cctttaaggagtcaatattggag 27927
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>ref|NM_021899.2| Mus musculus forkhead box J2 (Foxj2), mRNA
          Length = 4677

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 353  cctttaaggagtcaatattggag 375
            |||||||||||||||||||||||
Sbjct: 1671 cctttaaggagtcaatattggag 1649
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>gb|AC102477.18| Mus musculus chromosome 5, clone RP24-405C17, complete sequence
          Length = 179495

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                           
Query: 339  ttctgtgagcttcacctttaaggagtcaata 369
            |||||||| ||| ||||||||||||||||||
Sbjct: 5189 ttctgtgaccttgacctttaaggagtcaata 5159
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>dbj|AB221666.1| Mus musculus cDNA pooled tissues:(tissue_type=brain,dev_stage=8-12
            days
            neonate,strain=BALB/c),(tissue_type=testis,
            dev_stage=adult, strain=C57BL/6J), clone:V01Y042G05
          Length = 1698

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 353  cctttaaggagtcaatattggag 375
            |||||||||||||||||||||||
Sbjct: 1240 cctttaaggagtcaatattggag 1218
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>gb|AF253052.1|AF253052 Mus musculus fork head transcription factor Fhx (Fhx) mRNA, complete
            cds
          Length = 2757

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 353  cctttaaggagtcaatattggag 375
            |||||||||||||||||||||||
Sbjct: 2053 cctttaaggagtcaatattggag 2031
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>ref|XM_578387.1| PREDICTED: Rattus norvegicus similar to fork head transcription
            factor Fhx (LOC502886), mRNA
          Length = 2103

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 353  cctttaaggagtcaatattggag 375
            |||||||||||||||||||||||
Sbjct: 1645 cctttaaggagtcaatattggag 1623
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>ref|NM_001031451.1| Gallus gallus FYN binding protein (FYB-120/130) (FYB), mRNA
          Length = 3618

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 197  atcactgtctccacaatctttt 218
            ||||||||||||||||||||||
Sbjct: 2310 atcactgtctccacaatctttt 2289
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>emb|AJ720995.1| Gallus gallus mRNA for hypothetical protein, clone 32b13
          Length = 3618

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 197  atcactgtctccacaatctttt 218
            ||||||||||||||||||||||
Sbjct: 2310 atcactgtctccacaatctttt 2289
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>gb|AC159092.11| Mus musculus chromosome 1, clone RP23-103C13, complete sequence
          Length = 196891

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 493    attttcagataaagttgcttgttct 517
              |||||||||||| ||||||||||||
Sbjct: 153846 attttcagataatgttgcttgttct 153870
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>gb|AC114986.13| Mus musculus chromosome 1, clone RP23-242G7, complete sequence
          Length = 195146

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 493    attttcagataaagttgcttgttct 517
              |||||||||||| ||||||||||||
Sbjct: 192475 attttcagataatgttgcttgttct 192499
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>ref|XM_544750.2| PREDICTED: Canis familiaris similar to acheron isoform 1
           (LOC487625), mRNA
          Length = 2254

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 516 cttctccaggttttcagcagaaaaa 540
           |||||||||||||||| ||||||||
Sbjct: 633 cttctccaggttttcatcagaaaaa 609
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>gb|AC122230.4| Mus musculus BAC clone RP23-133F23 from 9, complete sequence
          Length = 183554

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 283    cttccaccggccacatcttct 303
              |||||||||||||||||||||
Sbjct: 138871 cttccaccggccacatcttct 138851
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>dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, complete genome
          Length = 4171146

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 530     cagcagaaaaacgtggatggc 550
               |||||||||||||||||||||
Sbjct: 3013634 cagcagaaaaacgtggatggc 3013614
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>gb|AC139378.4| Mus musculus BAC clone RP23-265F20 from 9, complete sequence
          Length = 256632

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 283    cttccaccggccacatcttct 303
              |||||||||||||||||||||
Sbjct: 151824 cttccaccggccacatcttct 151844
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>emb|AL772323.8| Mouse DNA sequence from clone RP23-370F9 on chromosome 2, complete
             sequence
          Length = 212243

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 451   agctgagcagggctgcaatgg 471
             |||||||||||||||||||||
Sbjct: 66863 agctgagcagggctgcaatgg 66883
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>gb|AC140465.2| Mus musculus BAC clone RP24-389J3 from chromosome 16, complete sequence
          Length = 189550

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 208   cacaatcttttttagtttca 227
             ||||||||||||||||||||
Sbjct: 33342 cacaatcttttttagtttca 33361
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>ref|NM_018357.2| Homo sapiens La ribonucleoprotein domain family, member 6 (LARP6),
           transcript variant 1, mRNA
          Length = 2065

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 516 cttctccaggttttcagcagaaaa 539
           |||||||||||||||| |||||||
Sbjct: 404 cttctccaggttttcatcagaaaa 381
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>ref|XM_726134.1| Plasmodium yoelii yoelii str. 17XNL origin recognition complex
           subunit 2 (PY03235) partial mRNA
          Length = 1374

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 120 gacaattcacaagatgaaga 139
           ||||||||||||||||||||
Sbjct: 106 gacaattcacaagatgaaga 125
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>ref|XM_668171.1| Plasmodium berghei strain ANKA hypothetical protein (PB000518.03.0)
            partial mRNA
          Length = 1167

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 120  gacaattcacaagatgaaga 139
            ||||||||||||||||||||
Sbjct: 1078 gacaattcacaagatgaaga 1097
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>emb|AL139093.11| Human DNA sequence from clone RP11-440J4 on chromosome 6 Contains a
             serine palmitoyltransferase long chain base subunit 1
             (SPTLC1) pseudogene, complete sequence
          Length = 131995

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 18    tagagagcctagacatagct 37
             ||||||||||||||||||||
Sbjct: 35270 tagagagcctagacatagct 35251
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>ref|XM_964220.1| PREDICTED: Tribolium castaneum similar to CG40084-PC.3 (LOC657784),
           mRNA
          Length = 2787

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 414 cacatcatccccttgatgca 433
           ||||||||||||||||||||
Sbjct: 858 cacatcatccccttgatgca 839
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>gb|BC014018.2| Homo sapiens La ribonucleoprotein domain family, member 6,
           transcript variant 1, mRNA (cDNA clone MGC:20301
           IMAGE:4127153), complete cds
          Length = 2022

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 516 cttctccaggttttcagcagaaaa 539
           |||||||||||||||| |||||||
Sbjct: 361 cttctccaggttttcatcagaaaa 338
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>emb|AL833876.1|HSM805170 Homo sapiens mRNA; cDNA DKFZp762N186 (from clone DKFZp762N186)
          Length = 2024

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 516 cttctccaggttttcagcagaaaa 539
           |||||||||||||||| |||||||
Sbjct: 364 cttctccaggttttcatcagaaaa 341
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>emb|CR592697.1| full-length cDNA clone CS0DF010YN23 of Fetal brain of Homo sapiens
           (human)
          Length = 2004

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 516 cttctccaggttttcagcagaaaa 539
           |||||||||||||||| |||||||
Sbjct: 393 cttctccaggttttcatcagaaaa 370
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>dbj|AK002058.1| Homo sapiens cDNA FLJ11196 fis, clone PLACE1007688, weakly similar
           to LA PROTEIN HOMOLOG
          Length = 2061

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 516 cttctccaggttttcagcagaaaa 539
           |||||||||||||||| |||||||
Sbjct: 404 cttctccaggttttcatcagaaaa 381
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>gb|AC090868.4| Homo sapiens chromosome 15, clone RP11-795G3, complete sequence
          Length = 183890

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 516   cttctccaggttttcagcagaaaa 539
             |||||||||||||||| |||||||
Sbjct: 69564 cttctccaggttttcatcagaaaa 69541
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>gb|BC009446.1| Homo sapiens La ribonucleoprotein domain family, member 6,
           transcript variant 1, mRNA (cDNA clone MGC:15884
           IMAGE:3529516), complete cds
          Length = 2018

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 516 cttctccaggttttcagcagaaaa 539
           |||||||||||||||| |||||||
Sbjct: 357 cttctccaggttttcatcagaaaa 334
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>gb|BC006082.1| Homo sapiens La ribonucleoprotein domain family, member 6,
           transcript variant 1, mRNA (cDNA clone MGC:12583
           IMAGE:2961587), complete cds
          Length = 2018

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 516 cttctccaggttttcagcagaaaa 539
           |||||||||||||||| |||||||
Sbjct: 357 cttctccaggttttcatcagaaaa 334
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>gb|AC010859.5| Homo sapiens chromosome , clone RP11-3D19, complete sequence
          Length = 171301

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 128    acaagatgaagatacaggga 147
              ||||||||||||||||||||
Sbjct: 123845 acaagatgaagatacaggga 123864
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>gb|AY014830.1| Mus musculus lysyl hydroxylase 3 (Plod3) gene, complete cds
          Length = 15549

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 337   tcttctgtgagcttcacctt 356
             ||||||||||||||||||||
Sbjct: 11337 tcttctgtgagcttcacctt 11356
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>gb|AC154505.3| Mus musculus BAC clone RP24-92J14 from chromosome 13, complete
            sequence
          Length = 199707

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 338  cttctgtgagcttcacctttaagg 361
            |||||||||||||||| |||||||
Sbjct: 6929 cttctgtgagcttcacttttaagg 6952
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>gb|AC009269.6|AC009269 Homo sapiens chromosome 15, clone RP11-138H8, complete sequence
          Length = 172850

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 516   cttctccaggttttcagcagaaaa 539
             |||||||||||||||| |||||||
Sbjct: 13177 cttctccaggttttcatcagaaaa 13154
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>gb|AC117469.3| Homo sapiens 3 BAC RP11-513G11 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 144820

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 131   agatgaagatacagggagca 150
             ||||||||||||||||||||
Sbjct: 64196 agatgaagatacagggagca 64177
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>gb|AC015912.16| Homo sapiens chromosome 17, clone RP11-670E13, complete sequence
          Length = 118172

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 386  tgatcttagttgtccctggt 405
            ||||||||||||||||||||
Sbjct: 7153 tgatcttagttgtccctggt 7134
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>gb|AC106858.12| Homo sapiens chromosome 17, clone RP11-347L15, complete sequence
          Length = 160484

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 386   tgatcttagttgtccctggt 405
             ||||||||||||||||||||
Sbjct: 19005 tgatcttagttgtccctggt 19024
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>gb|AF443829.1| Homo sapiens acheron mRNA, complete cds
          Length = 2057

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 516 cttctccaggttttcagcagaaaa 539
           |||||||||||||||| |||||||
Sbjct: 403 cttctccaggttttcatcagaaaa 380
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>gb|AF443828.1| Homo sapiens acheron mRNA, complete cds
          Length = 2057

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 516 cttctccaggttttcagcagaaaa 539
           |||||||||||||||| |||||||
Sbjct: 403 cttctccaggttttcatcagaaaa 380
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>dbj|AK130092.1| Homo sapiens cDNA FLJ26582 fis, clone LNF07059
          Length = 1537

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 516 cttctccaggttttcagcagaaaa 539
           |||||||||||||||| |||||||
Sbjct: 304 cttctccaggttttcatcagaaaa 281
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>dbj|AP006278.1| Homo sapiens genomic DNA, chromosome 8q22.1, clone: KB1573B4, complete
             sequence
          Length = 157927

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 128   acaagatgaagatacaggga 147
             ||||||||||||||||||||
Sbjct: 80102 acaagatgaagatacaggga 80121
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>gb|AC174772.1| Gasterosteus aculeatus clone VMRC28-84K14, complete sequence
          Length = 121286

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 14    agactagagagcctagacat 33
             ||||||||||||||||||||
Sbjct: 45757 agactagagagcctagacat 45738
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>emb|AL590449.1|CNS07EGG chromosome X of strain GB-M1 of Encephalitozoon cuniculi (Microspora)
          Length = 262797

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 474    cttcttggccagttcttcca 493
              ||||||||||||||||||||
Sbjct: 104212 cttcttggccagttcttcca 104193
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>gb|AC147987.5| Mus musculus BAC clone RP24-456B4 from 5, complete sequence
          Length = 195371

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 337    tcttctgtgagcttcacctt 356
              ||||||||||||||||||||
Sbjct: 183078 tcttctgtgagcttcacctt 183097
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>gb|AC147986.3| Mus musculus BAC clone RP24-404L1 from 5, complete sequence
          Length = 177652

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 337    tcttctgtgagcttcacctt 356
              ||||||||||||||||||||
Sbjct: 149502 tcttctgtgagcttcacctt 149483
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>emb|CT025549.13| Mouse DNA sequence from clone RP24-235K10 on chromosome 13, complete
              sequence
          Length = 162143

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 338    cttctgtgagcttcacctttaagg 361
              |||||||||||||||| |||||||
Sbjct: 113971 cttctgtgagcttcacttttaagg 113994
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>emb|AL645911.14| Mouse DNA sequence from clone RP23-25M3 on chromosome 11, complete
             sequence
          Length = 244653

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 477   cttggccagttcttccattt 496
             ||||||||||||||||||||
Sbjct: 11820 cttggccagttcttccattt 11801


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,340,283
Number of Sequences: 3902068
Number of extensions: 5340283
Number of successful extensions: 118808
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 118603
Number of HSP's gapped (non-prelim): 202
length of query: 552
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 529
effective length of database: 17,143,297,704
effective search space: 9068804485416
effective search space used: 9068804485416
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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