ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags36a23 |
|---|---|
| Clone Library Name | barley_pub |
>MAL61_YEAST (P15685) Maltose permease MAL61 (Maltose transport protein MAL61)| Length = 614 Score = 34.3 bits (77), Expect = 0.42 Identities = 17/43 (39%), Positives = 25/43 (58%) Frame = -2 Query: 359 SSTPSMLSRCKLLQTLLIARNIWPVIQVVINILAMWNVRKSTW 231 S PS R K T+++ARN + VIQVV+ +L M+ + W Sbjct: 482 SEMPSSRLRTK---TIILARNAYNVIQVVVTVLIMYQLNSEKW 521
>MAL31_YEAST (P38156) Maltose permease MAL31 (Maltose transport protein MAL31)| Length = 614 Score = 34.3 bits (77), Expect = 0.42 Identities = 17/43 (39%), Positives = 25/43 (58%) Frame = -2 Query: 359 SSTPSMLSRCKLLQTLLIARNIWPVIQVVINILAMWNVRKSTW 231 S PS R K T+++ARN + VIQVV+ +L M+ + W Sbjct: 482 SEIPSSRLRTK---TIILARNAYNVIQVVVTVLIMYQLNSEKW 521
>PPIL4_USTMA (P0C196) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 551 Score = 33.9 bits (76), Expect = 0.55 Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 13/71 (18%) Frame = -3 Query: 733 ERERKGAISQHRPSHADDLXRMHAKDST---------SKTSR----READQTHDREWEEE 593 E E K H + D+ R H ST S+ SR R+ D+ DR+ E E Sbjct: 469 EGESKCRYEAHSHTRHDEHTRRHDSSSTAARRDEDRRSERSRHDRDRDRDRDRDRDRERE 528 Query: 592 KRPRTEAKRKH 560 R RTE +R+H Sbjct: 529 HRRRTEDRRRH 539
>IF2_SILPO (Q5LWL4) Translation initiation factor IF-2| Length = 835 Score = 33.1 bits (74), Expect = 0.94 Identities = 17/61 (27%), Positives = 30/61 (49%) Frame = -3 Query: 736 RERERKGAISQHRPSHADDLXRMHAKDSTSKTSRREADQTHDREWEEEKRPRTEAKRKHR 557 RE E + A++ R A+ + +REA+Q + EEE+R R EA+ + + Sbjct: 87 RESEEAAQREAEEKARAEERERRRAEQEAKEREQREAEQRAREKAEEEERQRREAEEEAK 146 Query: 556 K 554 + Sbjct: 147 R 147
>DDX23_PONPY (Q5RC67) Probable ATP-dependent RNA helicase DDX23 (EC 3.6.1.-)| (DEAD box protein 23) Length = 820 Score = 32.3 bits (72), Expect = 1.6 Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 7/68 (10%) Frame = -3 Query: 736 RERERKGAISQHRPSHAD-------DLXRMHAKDSTSKTSRREADQTHDREWEEEKRPRT 578 R+R+RK + S+ R H R ++ +++ RR ++ D+E + K+ R Sbjct: 32 RDRDRKSSPSKDRKRHRSRDRRRGGSRSRSRSRSKSAERERRHKERERDKERDRNKKDRD 91 Query: 577 EAKRKHRK 554 K HR+ Sbjct: 92 RDKDGHRR 99
>DDX23_HUMAN (Q9BUQ8) Probable ATP-dependent RNA helicase DDX23 (EC 3.6.1.-)| (DEAD box protein 23) (100 kDa U5 snRNP-specific protein) (U5-100kD) (PRP28 homolog) Length = 820 Score = 32.3 bits (72), Expect = 1.6 Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 7/68 (10%) Frame = -3 Query: 736 RERERKGAISQHRPSHAD-------DLXRMHAKDSTSKTSRREADQTHDREWEEEKRPRT 578 R+R+RK + S+ R H R ++ +++ RR ++ D+E + K+ R Sbjct: 32 RDRDRKSSPSKDRKRHRSRDRRRGGSRSRSRSRSKSAERERRHKERERDKERDRNKKDRD 91 Query: 577 EAKRKHRK 554 K HR+ Sbjct: 92 RDKDGHRR 99
>SFR12_MOUSE (Q8BZX4) Splicing factor, arginine/serine-rich 12| (Serine-arginine-rich splicing regulatory protein 86) (SRrp86) Length = 494 Score = 31.2 bits (69), Expect = 3.6 Identities = 16/61 (26%), Positives = 27/61 (44%) Frame = -3 Query: 736 RERERKGAISQHRPSHADDLXRMHAKDSTSKTSRREADQTHDREWEEEKRPRTEAKRKHR 557 RERE+ + R + D + +E +Q D+E E+++ T+ KRK Sbjct: 284 REREKDREKDKERGKNKDKDREKEKDHEKERDKEKEKEQDKDKEREKDRSKETDEKRKKE 343 Query: 556 K 554 K Sbjct: 344 K 344
>AP3D1_BOVIN (Q865S1) AP-3 complex subunit delta-1 (Adapter-related protein| complex 3 delta-1 subunit) (Delta-adaptin 3) (AP-3 complex delta subunit) (Delta-adaptin) Length = 1207 Score = 30.4 bits (67), Expect = 6.1 Identities = 13/36 (36%), Positives = 19/36 (52%) Frame = -3 Query: 661 KDSTSKTSRREADQTHDREWEEEKRPRTEAKRKHRK 554 K+ + E D DRE + EK+P K+KH+K Sbjct: 898 KEGQEEPRGEEQDAEEDREQDLEKKPSKHKKKKHKK 933
>K0853_HUMAN (Q5T200) Protein KIAA0853| Length = 1668 Score = 30.4 bits (67), Expect = 6.1 Identities = 16/61 (26%), Positives = 26/61 (42%) Frame = -3 Query: 736 RERERKGAISQHRPSHADDLXRMHAKDSTSKTSRREADQTHDREWEEEKRPRTEAKRKHR 557 RERER + R + + + R+ D+ HDRE E E+ E +R+ Sbjct: 693 RERERDREREKERELERERAREREREREKERDRERDRDRDHDRERERERERDREKERERE 752 Query: 556 K 554 + Sbjct: 753 R 753
>RU17_XENTR (Q66II8) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 471 Score = 30.4 bits (67), Expect = 6.1 Identities = 15/60 (25%), Positives = 32/60 (53%) Frame = -3 Query: 736 RERERKGAISQHRPSHADDLXRMHAKDSTSKTSRREADQTHDREWEEEKRPRTEAKRKHR 557 +ERER+ + S+ R + + K S ++ ++ D+ D++ E++K + KR+ R Sbjct: 241 KERERRRSRSRERRRRSRSREKEERKRSRERSRDKDKDKDKDKDKEKDKDKDRDRKRRSR 300
>SYE2_METCA (Q609J9) Glutamyl-tRNA synthetase 2 (EC 6.1.1.17) (Glutamate--tRNA| ligase 2) (GluRS 2) Length = 468 Score = 30.0 bits (66), Expect = 7.9 Identities = 12/49 (24%), Positives = 28/49 (57%) Frame = -3 Query: 640 SRREADQTHDREWEEEKRPRTEAKRKHRK*VHAGVLIILTYQGVSLGDV 494 ++ E D+ + E +++PR + + +HR GVL ++ ++ + G+V Sbjct: 101 TKEELDELRAGQMERKEKPRYDGRCRHRSEPRPGVLPVIRFRNPTEGEV 149 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 109,988,521 Number of Sequences: 219361 Number of extensions: 2346154 Number of successful extensions: 6795 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 6390 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6778 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 7819576386 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
