ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags35l20
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 135 2e-28
2gb|AC084766.8| Oryza sativa chromosome 3 BAC OSJNBb0048D20 genom... 135 2e-28
3dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 135 2e-28
4dbj|AK101145.1| Oryza sativa (japonica cultivar-group) cDNA clon... 135 2e-28
5dbj|AK069760.1| Oryza sativa (japonica cultivar-group) cDNA clon... 135 2e-28
6dbj|AK067678.1| Oryza sativa (japonica cultivar-group) cDNA clon... 135 2e-28
7dbj|AK065781.1| Oryza sativa (japonica cultivar-group) cDNA clon... 135 2e-28
8dbj|AK062206.1| Oryza sativa (japonica cultivar-group) cDNA clon... 135 2e-28
9gb|BT023962.1| Zea mays clone EL01N0412B07 mRNA sequence 123 6e-25
10gb|AY109452.1| Zea mays CL2657_1 mRNA sequence 113 6e-22
11ref|XM_470715.1| Oryza sativa (japonica cultivar-group), mRNA 84 6e-13
12gb|BT018682.1| Zea mays clone EL01N0511F05.d mRNA sequence 80 9e-12
13gb|AC159316.3| Mus musculus BAC clone RP23-93F3 from chromosome ... 46 0.12
14gb|AC124750.5| Mus musculus BAC clone RP23-273A20 from 8, comple... 46 0.12
15gb|AC165370.4| Mus musculus BAC clone RP23-2N3 from chromosome 1... 42 1.9
16gb|AC110088.5| Homo sapiens BAC clone RP11-783N5 from 4, complet... 42 1.9
17gb|AC098822.3| Homo sapiens BAC clone RP11-338B23 from 4, comple... 42 1.9
18gb|BC093601.1| Rattus norvegicus similar to downregulated in ren... 42 1.9
19ref|NM_001025129.1| Rattus norvegicus similar to downregulated i... 42 1.9
20gb|AC133948.3| Mus musculus BAC clone RP24-226H19 from 10, compl... 42 1.9
21emb|AL645491.15| Mouse DNA sequence from clone RP23-10H1 on chro... 42 1.9
22gb|AC147988.3| Mus musculus BAC clone RP24-459A9 from chromosome... 40 7.5
23emb|AL023913.6|HS1068F16 Human DNA sequence from clone RP5-1068F... 40 7.5
24gb|AC067718.20| Homo sapiens 3 BAC RP11-198M8 (Roswell Park Canc... 40 7.5
25gb|AC093608.3| Homo sapiens BAC clone RP11-700C8 from 4, complet... 40 7.5
26gb|AC154876.7| Mus musculus chromosome 3, clone RP23-190D19, com... 40 7.5
27gb|AC109199.10| Mus musculus chromosome 1, clone RP23-29D20, com... 40 7.5
28gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome 40 7.5 
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  135 bits (68), Expect = 2e-28
 Identities = 121/135 (89%), Gaps = 4/135 (2%)
 Strand = Plus / Plus

                                                                            
Query: 168      ctagggaaatcagagggtctgtggcatccagacaggtcc-tcttaagcaaagcttccagg 226
                |||||||||| ||| ||||| |||||||||| ||||||| ||||| ||||||||||||||
Sbjct: 14711248 ctagggaaataagatggtctatggcatccaggcaggtccctcttaggcaaagcttccagg 14711307

                                                                            
Query: 227      ttggg-ccatactca--gtcatctggtttgggtaggggctccactaagcaggctccaaac 283
                ||||| ||||||||   ||||||||||||||| |||||||||| ||||||||||||| ||
Sbjct: 14711308 ttggggccatactcttggtcatctggtttgggaaggggctccaataagcaggctccatac 14711367

                               
Query: 284      ttcattagtcttggc 298
                |||||| ||||||||
Sbjct: 14711368 ttcattggtcttggc 14711382



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 64/75 (85%), Gaps = 2/75 (2%)
 Strand = Plus / Plus

                                                                            
Query: 291      gtcttggctgttttcggtaaggga-ttgggcaggggtgcaaatgtgaaacggacaggttc 349
                ||||||||||||||  ||||||||  |||||| ||| ||||| |||||| | |||||| |
Sbjct: 14711391 gtcttggctgtttttagtaagggaggtgggcatggg-gcaaaggtgaaaagaacaggtcc 14711449

                               
Query: 350      atcagaagagagctg 364
                ||||||||| |||||
Sbjct: 14711450 atcagaagatagctg 14711464



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 53/64 (82%)
 Strand = Plus / Plus

                                                                            
Query: 433      acccgctgctgccagaaccaccactgtacccactgtaagcaccatagccacctncggaga 492
                |||| ||||||||||||| |||||| || ||||  ||||| ||||| || ||| | ||||
Sbjct: 14711828 acccactgctgccagaacgaccactatatccaccataagccccataacctcctccagaga 14711887

                    
Query: 493      cctg 496
                ||||
Sbjct: 14711888 cctg 14711891
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>gb|AC084766.8| Oryza sativa chromosome 3 BAC OSJNBb0048D20 genomic sequence, complete
             sequence
          Length = 130306

 Score =  135 bits (68), Expect = 2e-28
 Identities = 121/135 (89%), Gaps = 4/135 (2%)
 Strand = Plus / Plus

                                                                         
Query: 168   ctagggaaatcagagggtctgtggcatccagacaggtcc-tcttaagcaaagcttccagg 226
             |||||||||| ||| ||||| |||||||||| ||||||| ||||| ||||||||||||||
Sbjct: 50160 ctagggaaataagatggtctatggcatccaggcaggtccctcttaggcaaagcttccagg 50219

                                                                         
Query: 227   ttggg-ccatactca--gtcatctggtttgggtaggggctccactaagcaggctccaaac 283
             ||||| ||||||||   ||||||||||||||| |||||||||| ||||||||||||| ||
Sbjct: 50220 ttggggccatactcttggtcatctggtttgggaaggggctccaataagcaggctccatac 50279

                            
Query: 284   ttcattagtcttggc 298
             |||||| ||||||||
Sbjct: 50280 ttcattggtcttggc 50294



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 64/75 (85%), Gaps = 2/75 (2%)
 Strand = Plus / Plus

                                                                         
Query: 291   gtcttggctgttttcggtaaggga-ttgggcaggggtgcaaatgtgaaacggacaggttc 349
             ||||||||||||||  ||||||||  |||||| ||| ||||| |||||| | |||||| |
Sbjct: 50303 gtcttggctgtttttagtaagggaggtgggcatggg-gcaaaggtgaaaagaacaggtcc 50361

                            
Query: 350   atcagaagagagctg 364
             ||||||||| |||||
Sbjct: 50362 atcagaagatagctg 50376



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 53/64 (82%)
 Strand = Plus / Plus

                                                                         
Query: 433   acccgctgctgccagaaccaccactgtacccactgtaagcaccatagccacctncggaga 492
             |||| ||||||||||||| |||||| || ||||  ||||| ||||| || ||| | ||||
Sbjct: 50740 acccactgctgccagaacgaccactatatccaccataagccccataacctcctccagaga 50799

                 
Query: 493   cctg 496
             ||||
Sbjct: 50800 cctg 50803
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  135 bits (68), Expect = 2e-28
 Identities = 121/135 (89%), Gaps = 4/135 (2%)
 Strand = Plus / Plus

                                                                            
Query: 168      ctagggaaatcagagggtctgtggcatccagacaggtcc-tcttaagcaaagcttccagg 226
                |||||||||| ||| ||||| |||||||||| ||||||| ||||| ||||||||||||||
Sbjct: 14705782 ctagggaaataagatggtctatggcatccaggcaggtccctcttaggcaaagcttccagg 14705841

                                                                            
Query: 227      ttggg-ccatactca--gtcatctggtttgggtaggggctccactaagcaggctccaaac 283
                ||||| ||||||||   ||||||||||||||| |||||||||| ||||||||||||| ||
Sbjct: 14705842 ttggggccatactcttggtcatctggtttgggaaggggctccaataagcaggctccatac 14705901

                               
Query: 284      ttcattagtcttggc 298
                |||||| ||||||||
Sbjct: 14705902 ttcattggtcttggc 14705916



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 64/75 (85%), Gaps = 2/75 (2%)
 Strand = Plus / Plus

                                                                            
Query: 291      gtcttggctgttttcggtaaggga-ttgggcaggggtgcaaatgtgaaacggacaggttc 349
                ||||||||||||||  ||||||||  |||||| ||| ||||| |||||| | |||||| |
Sbjct: 14705925 gtcttggctgtttttagtaagggaggtgggcatggg-gcaaaggtgaaaagaacaggtcc 14705983

                               
Query: 350      atcagaagagagctg 364
                ||||||||| |||||
Sbjct: 14705984 atcagaagatagctg 14705998



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 53/64 (82%)
 Strand = Plus / Plus

                                                                            
Query: 433      acccgctgctgccagaaccaccactgtacccactgtaagcaccatagccacctncggaga 492
                |||| ||||||||||||| |||||| || ||||  ||||| ||||| || ||| | ||||
Sbjct: 14706362 acccactgctgccagaacgaccactatatccaccataagccccataacctcctccagaga 14706421

                    
Query: 493      cctg 496
                ||||
Sbjct: 14706422 cctg 14706425
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>dbj|AK101145.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033026O12, full
            insert sequence
          Length = 2971

 Score =  135 bits (68), Expect = 2e-28
 Identities = 121/135 (89%), Gaps = 4/135 (2%)
 Strand = Plus / Minus

                                                                        
Query: 168  ctagggaaatcagagggtctgtggcatccagacaggtcc-tcttaagcaaagcttccagg 226
            |||||||||| ||| ||||| |||||||||| ||||||| ||||| ||||||||||||||
Sbjct: 2059 ctagggaaataagatggtctatggcatccaggcaggtccctcttaggcaaagcttccagg 2000

                                                                        
Query: 227  ttggg-ccatactca--gtcatctggtttgggtaggggctccactaagcaggctccaaac 283
            ||||| ||||||||   ||||||||||||||| |||||||||| ||||||||||||| ||
Sbjct: 1999 ttggggccatactcttggtcatctggtttgggaaggggctccaataagcaggctccatac 1940

                           
Query: 284  ttcattagtcttggc 298
            |||||| ||||||||
Sbjct: 1939 ttcattggtcttggc 1925



 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 80/93 (86%)
 Strand = Plus / Minus

                                                                        
Query: 425  gccagataacccgctgctgccagaaccaccactgtacccactgtaagcaccatagccacc 484
            |||||||||||| ||||||||||||| |||||| || ||||  ||||| ||||| || ||
Sbjct: 1679 gccagataacccactgctgccagaacgaccactatatccaccataagccccataacctcc 1620

                                             
Query: 485  tncggagacctgagagctgccataatttgcata 517
            | | |||||||| |||||||||||| |||||||
Sbjct: 1619 tccagagacctgggagctgccataacttgcata 1587



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 64/75 (85%), Gaps = 2/75 (2%)
 Strand = Plus / Minus

                                                                        
Query: 291  gtcttggctgttttcggtaaggga-ttgggcaggggtgcaaatgtgaaacggacaggttc 349
            ||||||||||||||  ||||||||  |||||| ||| ||||| |||||| | |||||| |
Sbjct: 1916 gtcttggctgtttttagtaagggaggtgggcatggg-gcaaaggtgaaaagaacaggtcc 1858

                           
Query: 350  atcagaagagagctg 364
            ||||||||| |||||
Sbjct: 1857 atcagaagatagctg 1843
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>dbj|AK069760.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023031F14, full
            insert sequence
          Length = 2121

 Score =  135 bits (68), Expect = 2e-28
 Identities = 121/135 (89%), Gaps = 4/135 (2%)
 Strand = Plus / Minus

                                                                        
Query: 168  ctagggaaatcagagggtctgtggcatccagacaggtcc-tcttaagcaaagcttccagg 226
            |||||||||| ||| ||||| |||||||||| ||||||| ||||| ||||||||||||||
Sbjct: 1951 ctagggaaataagatggtctatggcatccaggcaggtccctcttaggcaaagcttccagg 1892

                                                                        
Query: 227  ttggg-ccatactca--gtcatctggtttgggtaggggctccactaagcaggctccaaac 283
            ||||| ||||||||   ||||||||||||||| |||||||||| ||||||||||||| ||
Sbjct: 1891 ttggggccatactcttggtcatctggtttgggaaggggctccaataagcaggctccatac 1832

                           
Query: 284  ttcattagtcttggc 298
            |||||| ||||||||
Sbjct: 1831 ttcattggtcttggc 1817



 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 80/93 (86%)
 Strand = Plus / Minus

                                                                        
Query: 425  gccagataacccgctgctgccagaaccaccactgtacccactgtaagcaccatagccacc 484
            |||||||||||| ||||||||||||| |||||| || ||||  ||||| ||||| || ||
Sbjct: 1738 gccagataacccactgctgccagaacgaccactatatccaccataagccccataacctcc 1679

                                             
Query: 485  tncggagacctgagagctgccataatttgcata 517
            | | |||||||| |||||||||||| |||||||
Sbjct: 1678 tccagagacctgggagctgccataacttgcata 1646
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>dbj|AK067678.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116I07, full
            insert sequence
          Length = 2834

 Score =  135 bits (68), Expect = 2e-28
 Identities = 121/135 (89%), Gaps = 4/135 (2%)
 Strand = Plus / Minus

                                                                        
Query: 168  ctagggaaatcagagggtctgtggcatccagacaggtcc-tcttaagcaaagcttccagg 226
            |||||||||| ||| ||||| |||||||||| ||||||| ||||| ||||||||||||||
Sbjct: 1895 ctagggaaataagatggtctatggcatccaggcaggtccctcttaggcaaagcttccagg 1836

                                                                        
Query: 227  ttggg-ccatactca--gtcatctggtttgggtaggggctccactaagcaggctccaaac 283
            ||||| ||||||||   ||||||||||||||| |||||||||| ||||||||||||| ||
Sbjct: 1835 ttggggccatactcttggtcatctggtttgggaaggggctccaataagcaggctccatac 1776

                           
Query: 284  ttcattagtcttggc 298
            |||||| ||||||||
Sbjct: 1775 ttcattggtcttggc 1761



 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 80/93 (86%)
 Strand = Plus / Minus

                                                                        
Query: 425  gccagataacccgctgctgccagaaccaccactgtacccactgtaagcaccatagccacc 484
            |||||||||||| ||||||||||||| |||||| || ||||  ||||| ||||| || ||
Sbjct: 1682 gccagataacccactgctgccagaacgaccactatatccaccataagccccataacctcc 1623

                                             
Query: 485  tncggagacctgagagctgccataatttgcata 517
            | | |||||||| |||||||||||| |||||||
Sbjct: 1622 tccagagacctgggagctgccataacttgcata 1590
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>dbj|AK065781.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013040N11, full
            insert sequence
          Length = 3152

 Score =  135 bits (68), Expect = 2e-28
 Identities = 121/135 (89%), Gaps = 4/135 (2%)
 Strand = Plus / Minus

                                                                        
Query: 168  ctagggaaatcagagggtctgtggcatccagacaggtcc-tcttaagcaaagcttccagg 226
            |||||||||| ||| ||||| |||||||||| ||||||| ||||| ||||||||||||||
Sbjct: 2115 ctagggaaataagatggtctatggcatccaggcaggtccctcttaggcaaagcttccagg 2056

                                                                        
Query: 227  ttggg-ccatactca--gtcatctggtttgggtaggggctccactaagcaggctccaaac 283
            ||||| ||||||||   ||||||||||||||| |||||||||| ||||||||||||| ||
Sbjct: 2055 ttggggccatactcttggtcatctggtttgggaaggggctccaataagcaggctccatac 1996

                           
Query: 284  ttcattagtcttggc 298
            |||||| ||||||||
Sbjct: 1995 ttcattggtcttggc 1981



 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 80/93 (86%)
 Strand = Plus / Minus

                                                                        
Query: 425  gccagataacccgctgctgccagaaccaccactgtacccactgtaagcaccatagccacc 484
            |||||||||||| ||||||||||||| |||||| || ||||  ||||| ||||| || ||
Sbjct: 1735 gccagataacccactgctgccagaacgaccactatatccaccataagccccataacctcc 1676

                                             
Query: 485  tncggagacctgagagctgccataatttgcata 517
            | | |||||||| |||||||||||| |||||||
Sbjct: 1675 tccagagacctgggagctgccataacttgcata 1643



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 64/75 (85%), Gaps = 2/75 (2%)
 Strand = Plus / Minus

                                                                        
Query: 291  gtcttggctgttttcggtaaggga-ttgggcaggggtgcaaatgtgaaacggacaggttc 349
            ||||||||||||||  ||||||||  |||||| ||| ||||| |||||| | |||||| |
Sbjct: 1972 gtcttggctgtttttagtaagggaggtgggcatggg-gcaaaggtgaaaagaacaggtcc 1914

                           
Query: 350  atcagaagagagctg 364
            ||||||||| |||||
Sbjct: 1913 atcagaagatagctg 1899
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>dbj|AK062206.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-H05, full
            insert sequence
          Length = 1545

 Score =  135 bits (68), Expect = 2e-28
 Identities = 121/135 (89%), Gaps = 4/135 (2%)
 Strand = Plus / Minus

                                                                        
Query: 168  ctagggaaatcagagggtctgtggcatccagacaggtcc-tcttaagcaaagcttccagg 226
            |||||||||| ||| ||||| |||||||||| ||||||| ||||| ||||||||||||||
Sbjct: 1450 ctagggaaataagatggtctatggcatccaggcaggtccctcttaggcaaagcttccagg 1391

                                                                        
Query: 227  ttggg-ccatactca--gtcatctggtttgggtaggggctccactaagcaggctccaaac 283
            ||||| ||||||||   ||||||||||||||| |||||||||| ||||||||||||| ||
Sbjct: 1390 ttggggccatactcttggtcatctggtttgggaaggggctccaataagcaggctccatac 1331

                           
Query: 284  ttcattagtcttggc 298
            |||||| ||||||||
Sbjct: 1330 ttcattggtcttggc 1316



 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 80/93 (86%)
 Strand = Plus / Minus

                                                                        
Query: 425  gccagataacccgctgctgccagaaccaccactgtacccactgtaagcaccatagccacc 484
            |||||||||||| ||||||||||||| |||||| || ||||  ||||| ||||| || ||
Sbjct: 1237 gccagataacccactgctgccagaacgaccactatatccaccataagccccataacctcc 1178

                                             
Query: 485  tncggagacctgagagctgccataatttgcata 517
            | | |||||||| |||||||||||| |||||||
Sbjct: 1177 tccagagacctgggagctgccataacttgcata 1145
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>gb|BT023962.1| Zea mays clone EL01N0412B07 mRNA sequence
          Length = 2075

 Score =  123 bits (62), Expect = 6e-25
 Identities = 106/118 (89%), Gaps = 2/118 (1%)
 Strand = Plus / Minus

                                                                        
Query: 183  ggtctgtggcatccagacaggtcctcttaagcaaagcttccaggttgggccatactcagt 242
            ||||| ||||||||| || |||||||||||||||||||||||||||||||  | ||  ||
Sbjct: 1889 ggtctatggcatccacacgggtcctcttaagcaaagcttccaggttgggctct-cttggt 1831

                                                                      
Query: 243  catctggtttgggtaggggctccactaagcaggctccaaacttcattagtcttggctg 300
            ||||||||||||| |||||||||| |||||||||||||||||||| | ||||||||||
Sbjct: 1830 catctggtttgggaaggggctccaataagcaggctccaaacttcaat-gtcttggctg 1774



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 37/40 (92%)
 Strand = Plus / Minus

                                                    
Query: 84   gaccttccaatacatgggttcagaacatttacggcagggc 123
            |||||| |||||||| |||||||||||||| |||||||||
Sbjct: 1981 gacctttcaatacataggttcagaacatttgcggcagggc 1942
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>gb|AY109452.1| Zea mays CL2657_1 mRNA sequence
          Length = 2231

 Score =  113 bits (57), Expect = 6e-22
 Identities = 94/105 (89%), Gaps = 1/105 (0%)
 Strand = Plus / Plus

                                                                       
Query: 183 ggtctgtggcatccagacaggtcctcttaagcaaagcttccaggttgggccatactcagt 242
           ||||| ||||||||| || |||||||||||||||||||||||||||||||  | ||  ||
Sbjct: 303 ggtctatggcatccacacgggtcctcttaagcaaagcttccaggttgggctct-cttggt 361

                                                        
Query: 243 catctggtttgggtaggggctccactaagcaggctccaaacttca 287
           ||||||||||||| |||| ||||| ||||||||||||||||||||
Sbjct: 362 catctggtttgggaagggactccaataagcaggctccaaacttca 406



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 68/75 (90%), Gaps = 1/75 (1%)
 Strand = Plus / Plus

                                                                       
Query: 213 gcaaagcttccaggttgggccatactcagtcatctggtttgggtaggggctccactaagc 272
           ||||||||||||||||||||  | ||  ||||||||||||||| |||||||||| |||||
Sbjct: 1   gcaaagcttccaggttgggctct-cttggtcatctggtttgggaaggggctccaataagc 59

                          
Query: 273 aggctccaaacttca 287
           |||||||||||||||
Sbjct: 60  aggctccaaacttca 74



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                   
Query: 84  gaccttccaatacatgggttcagaacatttacggcagggc 123
           |||||| |||||||| |||||||||||||| |||||||||
Sbjct: 211 gacctttcaatacataggttcagaacatttgcggcagggc 250
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>ref|XM_470715.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1629

 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 80/93 (86%)
 Strand = Plus / Minus

                                                                        
Query: 425  gccagataacccgctgctgccagaaccaccactgtacccactgtaagcaccatagccacc 484
            |||||||||||| ||||||||||||| |||||| || ||||  ||||| ||||| || ||
Sbjct: 1590 gccagataacccactgctgccagaacgaccactatatccaccataagccccataacctcc 1531

                                             
Query: 485  tncggagacctgagagctgccataatttgcata 517
            | | |||||||| |||||||||||| |||||||
Sbjct: 1530 tccagagacctgggagctgccataacttgcata 1498
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>gb|BT018682.1| Zea mays clone EL01N0511F05.d mRNA sequence
          Length = 1447

 Score = 79.8 bits (40), Expect = 9e-12
 Identities = 56/60 (93%), Gaps = 1/60 (1%)
 Strand = Plus / Minus

                                                                        
Query: 241  gtcatctggtttgggtaggggctccactaagcaggctccaaacttcattagtcttggctg 300
            ||||||||||||||| |||||||||| |||||||||||||||||||| | ||||||||||
Sbjct: 1139 gtcatctggtttgggaaggggctccaataagcaggctccaaacttcaat-gtcttggctg 1081



 Score = 48.1 bits (24), Expect = 0.031
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                    
Query: 84   gaccttccaatacatgggttcagaacatttacggcagggc 123
            |||||| | |||||| |||||||||||||| |||||||||
Sbjct: 1285 gacctttcgatacataggttcagaacatttgcggcagggc 1246
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>gb|AC159316.3| Mus musculus BAC clone RP23-93F3 from chromosome 8, complete sequence
          Length = 240812

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 188    gtggcatccagacaggtcctctt 210
              |||||||||||||||||||||||
Sbjct: 183110 gtggcatccagacaggtcctctt 183132
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>gb|AC124750.5| Mus musculus BAC clone RP23-273A20 from 8, complete sequence
          Length = 215042

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 188   gtggcatccagacaggtcctctt 210
             |||||||||||||||||||||||
Sbjct: 38944 gtggcatccagacaggtcctctt 38966
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>gb|AC165370.4| Mus musculus BAC clone RP23-2N3 from chromosome 10, complete sequence
          Length = 219653

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 156   aaatgtattctgctagggaaa 176
             |||||||||||||||||||||
Sbjct: 47275 aaatgtattctgctagggaaa 47255
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>gb|AC110088.5| Homo sapiens BAC clone RP11-783N5 from 4, complete sequence
          Length = 48126

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 284   ttcattagtcttggctgtttt 304
             |||||||||||||||||||||
Sbjct: 30048 ttcattagtcttggctgtttt 30028
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>gb|AC098822.3| Homo sapiens BAC clone RP11-338B23 from 4, complete sequence
          Length = 181792

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 138    gaggaaaagataaagagtaaa 158
              |||||||||||||||||||||
Sbjct: 158037 gaggaaaagataaagagtaaa 158057
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>gb|BC093601.1| Rattus norvegicus similar to downregulated in renal cell carcinoma,
            mRNA (cDNA clone MGC:105610 IMAGE:7316049), complete cds
          Length = 2875

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 170  agggaaatcagagggtctgtggcat 194
            ||||||||| |||||||||||||||
Sbjct: 1872 agggaaatccgagggtctgtggcat 1848
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>ref|NM_001025129.1| Rattus norvegicus similar to downregulated in renal cell carcinoma
            (RGD1306327), mRNA
          Length = 2875

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 170  agggaaatcagagggtctgtggcat 194
            ||||||||| |||||||||||||||
Sbjct: 1872 agggaaatccgagggtctgtggcat 1848
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>gb|AC133948.3| Mus musculus BAC clone RP24-226H19 from 10, complete sequence
          Length = 168206

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 150   aagagtaaatgtattctgcta 170
             |||||||||||||||||||||
Sbjct: 92031 aagagtaaatgtattctgcta 92051
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>emb|AL645491.15| Mouse DNA sequence from clone RP23-10H1 on chromosome X, complete
             sequence
          Length = 127402

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 459   tacccactgtaagcaccatag 479
             |||||||||||||||||||||
Sbjct: 20201 tacccactgtaagcaccatag 20221
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>gb|AC147988.3| Mus musculus BAC clone RP24-459A9 from chromosome 18, complete sequence
          Length = 155208

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 60    acaataatacagattcttat 79
             ||||||||||||||||||||
Sbjct: 63378 acaataatacagattcttat 63397
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>emb|AL023913.6|HS1068F16 Human DNA sequence from clone RP5-1068F16 on chromosome 20p12 Contains
             the 3' end of the SNAP25 gene for 25kDa
             synaptosomal-associated protein, the RPL23AP6 gene for
             ribosomal protein L23a pseudogene 6, part of a novel gene
             and a hypoxia induced gene 1 (HIG1) pseudogene, complete
             sequence
          Length = 140306

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 343   caggttcatcagaagagagc 362
             ||||||||||||||||||||
Sbjct: 57862 caggttcatcagaagagagc 57843
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>gb|AC067718.20| Homo sapiens 3 BAC RP11-198M8 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 97995

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 372   caacaatctgcattctaata 391
             ||||||||||||||||||||
Sbjct: 82440 caacaatctgcattctaata 82421
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>gb|AC093608.3| Homo sapiens BAC clone RP11-700C8 from 4, complete sequence
          Length = 162015

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 500    gctgccataatttgcataac 519
              ||||||||||||||||||||
Sbjct: 150542 gctgccataatttgcataac 150523
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>gb|AC154876.7| Mus musculus chromosome 3, clone RP23-190D19, complete sequence
          Length = 196840

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 179   agagggtctgtggcatccag 198
             ||||||||||||||||||||
Sbjct: 65735 agagggtctgtggcatccag 65754
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>gb|AC109199.10| Mus musculus chromosome 1, clone RP23-29D20, complete sequence
          Length = 194339

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 171   gggaaatcagagggtctgtg 190
             ||||||||||||||||||||
Sbjct: 89067 gggaaatcagagggtctgtg 89086
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>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome
          Length = 7215267

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 339     cggacaggttcatcagaaga 358
               ||||||||||||||||||||
Sbjct: 6213069 cggacaggttcatcagaaga 6213088


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,411,700
Number of Sequences: 3902068
Number of extensions: 4411700
Number of successful extensions: 79399
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 79261
Number of HSP's gapped (non-prelim): 130
length of query: 552
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 529
effective length of database: 17,143,297,704
effective search space: 9068804485416
effective search space used: 9068804485416
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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