ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags36a16
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_470513.1| Oryza sativa (japonica cultivar-group), mRNA 165 2e-37
2dbj|AK100706.1| Oryza sativa (japonica cultivar-group) cDNA clon... 165 2e-37
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 90 1e-14
4gb|AC092263.7| Oryza sativa chromosome 3 BAC OSJNBa0033P04 genom... 90 1e-14
5dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 90 1e-14
6dbj|AK073260.1| Oryza sativa (japonica cultivar-group) cDNA clon... 90 1e-14
7ref|XM_477896.1| Oryza sativa (japonica cultivar-group), mRNA 50 0.008
8dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.008
9dbj|AP005444.4| Oryza sativa (japonica cultivar-group) genomic D... 50 0.008
10dbj|AP004395.3| Oryza sativa (japonica cultivar-group) genomic D... 50 0.008
11dbj|AK074000.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.008
12dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005 48 0.032
13gb|AC131794.3| Mus musculus BAC clone RP24-486P14 from chromosom... 44 0.51
14gb|AC153012.4| Mus musculus BAC clone RP23-302F19 from chromosom... 44 0.51
15gb|AF512737.1| Loxocemus bicolor 12S ribosomal RNA gene, partial... 42 2.0
16emb|BX572597.1| Rhodopseudomonas palustris CGA009 complete genom... 42 2.0
17gb|AC092814.2| Homo sapiens chromosome 1 clone RP11-565J7, compl... 42 2.0
18emb|AL163636.7|CNS01RIK Human chromosome 14 DNA sequence BAC R-9... 42 2.0
19emb|AL133371.3|CNS01DUW Human chromosome 14 DNA sequence BAC R-2... 42 2.0
20gb|AC160526.13| Mus musculus chromosome 8, clone RP24-191C23, co... 40 7.9
21gb|AC099707.14| Mus musculus chromosome 1, clone RP23-329C7, com... 40 7.9
22gb|AE017354.1| Legionella pneumophila subsp. pneumophila str. Ph... 40 7.9
23gb|AY596605.1| Saccharum officinarum clone SCQGLR1019F04, comple... 40 7.9
24gb|AC153597.13| Mus musculus 6 BAC RP23-18K9 (Roswell Park Cance... 40 7.9
25gb|AC113483.7| Mus musculus chromosome 1, clone RP23-343E12, com... 40 7.9
26gb|BT011074.1| Drosophila melanogaster SD14261 full insert cDNA 40 7.9
27emb|CR962127.1| Medicago truncatula chromosome 5 clone mth2-181n... 40 7.9
28gb|AC125075.4| Mus musculus BAC clone RP23-468P13 from chromosom... 40 7.9
29gb|AC110818.5| Mus musculus BAC clone RP23-198H8 from 16, comple... 40 7.9
30gb|BC055685.1| Mus musculus RIKEN cDNA D030041N04 gene, mRNA (cD... 40 7.9
31gb|AC156990.11| Mus musculus chromosome 8, clone RP23-322E23, co... 40 7.9
32gb|AC133571.47| Medicago truncatula clone mth2-10h12, complete s... 40 7.9
33gb|AC128952.4| Rattus norvegicus 14 BAC CH230-510F9 (Children's ... 40 7.9
34gb|AC078829.10| Oryza sativa chromosome 10 BAC OSJNBa0026O12 gen... 40 7.9
35dbj|AK163507.1| Mus musculus adult male corpora quadrigemina cDN... 40 7.9
36gb|AC156560.2| Mus musculus BAC clone RP24-358N14 from chromosom... 40 7.9
37dbj|AK031563.1| Mus musculus 13 days embryo male testis cDNA, RI... 40 7.9
38dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.9
39gb|AC155723.6| Mus musculus 6 BAC RP24-131B7 (Roswell Park Cance... 40 7.9
40gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 7.9
41emb|CT573053.1| Medicago truncatula chromosome 5 clone mte1-8e5,... 40 7.9
42gb|BC050979.1| Mus musculus RIKEN cDNA D030041N04 gene, mRNA (cD... 40 7.9
43gb|AC003107.1|AC003107 Human DNA from chromosome 19-specific cos... 40 7.9
44dbj|AP004542.1| Lotus japonicus genomic DNA, chromosome 1, clone... 40 7.9
45gb|AC161166.7| Mus musculus chromosome 7, clone RP23-26A14, comp... 40 7.9
46emb|AL833775.7| Mouse DNA sequence from clone RP23-135L5 on chro... 40 7.9 
>ref|XM_470513.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3810

 Score =  165 bits (83), Expect = 2e-37
 Identities = 128/143 (89%)
 Strand = Plus / Minus

                                                                        
Query: 389  cttcttgcagcaattctcttttgcctctcttgcttaagcctttcgagccgtttcatctgc 448
            |||||||||||||| ||||| ||||||||||||||||||||||| |||||||| ||||| 
Sbjct: 2474 cttcttgcagcaatcctcttctgcctctcttgcttaagcctttccagccgtttaatctgt 2415

                                                                        
Query: 449  tccgcttccagctctttcttttccttttgaaggcccgctttgtacgcccgtaggttttgc 508
            ||| ||||| ||||||||||| ||||||||||| | ||||| || ||||| |||||||| 
Sbjct: 2414 tcctcttcctgctctttctttgccttttgaaggtctgctttatatgcccgcaggttttgt 2355

                                   
Query: 509  gcacgtttctgtgcatcagttag 531
            ||||||||||||||||| |||||
Sbjct: 2354 gcacgtttctgtgcatctgttag 2332
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>dbj|AK100706.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023115B06, full
            insert sequence
          Length = 4301

 Score =  165 bits (83), Expect = 2e-37
 Identities = 128/143 (89%)
 Strand = Plus / Minus

                                                                        
Query: 389  cttcttgcagcaattctcttttgcctctcttgcttaagcctttcgagccgtttcatctgc 448
            |||||||||||||| ||||| ||||||||||||||||||||||| |||||||| ||||| 
Sbjct: 2711 cttcttgcagcaatcctcttctgcctctcttgcttaagcctttccagccgtttaatctgt 2652

                                                                        
Query: 449  tccgcttccagctctttcttttccttttgaaggcccgctttgtacgcccgtaggttttgc 508
            ||| ||||| ||||||||||| ||||||||||| | ||||| || ||||| |||||||| 
Sbjct: 2651 tcctcttcctgctctttctttgccttttgaaggtctgctttatatgcccgcaggttttgt 2592

                                   
Query: 509  gcacgtttctgtgcatcagttag 531
            ||||||||||||||||| |||||
Sbjct: 2591 gcacgtttctgtgcatctgttag 2569
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 63/69 (91%)
 Strand = Plus / Minus

                                                                            
Query: 389      cttcttgcagcaattctcttttgcctctcttgcttaagcctttcgagccgtttcatctgc 448
                |||||||||||||| ||||| ||||||||||||||||||||||| |||||||| ||||| 
Sbjct: 36050553 cttcttgcagcaatcctcttctgcctctcttgcttaagcctttccagccgtttaatctgt 36050494

                         
Query: 449      tccgcttcc 457
                ||| |||||
Sbjct: 36050493 tcctcttcc 36050485



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 65/73 (89%)
 Strand = Plus / Minus

                                                                            
Query: 459      gctctttcttttccttttgaaggcccgctttgtacgcccgtaggttttgcgcacgtttct 518
                ||||||||||| ||||||||||| | ||||| || ||||| |||||||| ||||||||||
Sbjct: 36048896 gctctttctttgccttttgaaggtctgctttatatgcccgcaggttttgtgcacgtttct 36048837

                             
Query: 519      gtgcatcagttag 531
                ||||||| |||||
Sbjct: 36048836 gtgcatctgttag 36048824
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>gb|AC092263.7| Oryza sativa chromosome 3 BAC OSJNBa0033P04 genomic sequence, complete
              sequence
          Length = 164179

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 63/69 (91%)
 Strand = Plus / Minus

                                                                          
Query: 389    cttcttgcagcaattctcttttgcctctcttgcttaagcctttcgagccgtttcatctgc 448
              |||||||||||||| ||||| ||||||||||||||||||||||| |||||||| ||||| 
Sbjct: 112064 cttcttgcagcaatcctcttctgcctctcttgcttaagcctttccagccgtttaatctgt 112005

                       
Query: 449    tccgcttcc 457
              ||| |||||
Sbjct: 112004 tcctcttcc 111996



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 65/73 (89%)
 Strand = Plus / Minus

                                                                          
Query: 459    gctctttcttttccttttgaaggcccgctttgtacgcccgtaggttttgcgcacgtttct 518
              ||||||||||| ||||||||||| | ||||| || ||||| |||||||| ||||||||||
Sbjct: 110407 gctctttctttgccttttgaaggtctgctttatatgcccgcaggttttgtgcacgtttct 110348

                           
Query: 519    gtgcatcagttag 531
              ||||||| |||||
Sbjct: 110347 gtgcatctgttag 110335
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 63/69 (91%)
 Strand = Plus / Minus

                                                                            
Query: 389      cttcttgcagcaattctcttttgcctctcttgcttaagcctttcgagccgtttcatctgc 448
                |||||||||||||| ||||| ||||||||||||||||||||||| |||||||| ||||| 
Sbjct: 36140627 cttcttgcagcaatcctcttctgcctctcttgcttaagcctttccagccgtttaatctgt 36140568

                         
Query: 449      tccgcttcc 457
                ||| |||||
Sbjct: 36140567 tcctcttcc 36140559



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 65/73 (89%)
 Strand = Plus / Minus

                                                                            
Query: 459      gctctttcttttccttttgaaggcccgctttgtacgcccgtaggttttgcgcacgtttct 518
                ||||||||||| ||||||||||| | ||||| || ||||| |||||||| ||||||||||
Sbjct: 36138970 gctctttctttgccttttgaaggtctgctttatatgcccgcaggttttgtgcacgtttct 36138911

                             
Query: 519      gtgcatcagttag 531
                ||||||| |||||
Sbjct: 36138910 gtgcatctgttag 36138898
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>dbj|AK073260.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033024I18, full
           insert sequence
          Length = 1483

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 63/69 (91%)
 Strand = Plus / Plus

                                                                       
Query: 389 cttcttgcagcaattctcttttgcctctcttgcttaagcctttcgagccgtttcatctgc 448
           |||||||||||||| ||||| ||||||||||||||||||||||| |||||||| ||||| 
Sbjct: 755 cttcttgcagcaatcctcttctgcctctcttgcttaagcctttccagccgtttaatctgt 814

                    
Query: 449 tccgcttcc 457
           ||| |||||
Sbjct: 815 tcctcttcc 823
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>ref|XM_477896.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3628

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                     
Query: 389  cttcttgcagcaattctcttttgcctctcttgcttaagcct 429
            |||||||| || |||||||||||||||||| | ||||||||
Sbjct: 3063 cttcttgcggctattctcttttgcctctctagtttaagcct 3023
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                         
Query: 389      cttcttgcagcaattctcttttgcctctcttgcttaagcct 429
                |||||||| || |||||||||||||||||| | ||||||||
Sbjct: 15151080 cttcttgcggctattctcttttgcctctctagtttaagcct 15151120
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>dbj|AP005444.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0011H01
          Length = 165634

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                       
Query: 389    cttcttgcagcaattctcttttgcctctcttgcttaagcct 429
              |||||||| || |||||||||||||||||| | ||||||||
Sbjct: 156984 cttcttgcggctattctcttttgcctctctagtttaagcct 157024
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>dbj|AP004395.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0030H06
          Length = 147890

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                      
Query: 389   cttcttgcagcaattctcttttgcctctcttgcttaagcct 429
             |||||||| || |||||||||||||||||| | ||||||||
Sbjct: 17829 cttcttgcggctattctcttttgcctctctagtttaagcct 17869
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>dbj|AK074000.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033073D02, full
            insert sequence
          Length = 3630

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                     
Query: 389  cttcttgcagcaattctcttttgcctctcttgcttaagcct 429
            |||||||| || |||||||||||||||||| | ||||||||
Sbjct: 3066 cttcttgcggctattctcttttgcctctctagtttaagcct 3026
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>dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005
          Length = 4429080

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                           
Query: 408     tttgcctctcttgcttaagcctttcgag 435
               ||||||||| ||||||||||||||||||
Sbjct: 2583527 tttgcctctgttgcttaagcctttcgag 2583554
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>gb|AC131794.3| Mus musculus BAC clone RP24-486P14 from chromosome 9, complete sequence
          Length = 166272

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 65     taatacaatgtgtagattatgt 86
              ||||||||||||||||||||||
Sbjct: 144108 taatacaatgtgtagattatgt 144129
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>gb|AC153012.4| Mus musculus BAC clone RP23-302F19 from chromosome 9, complete sequence
          Length = 196764

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 65     taatacaatgtgtagattatgt 86
              ||||||||||||||||||||||
Sbjct: 112873 taatacaatgtgtagattatgt 112894
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>gb|AF512737.1| Loxocemus bicolor 12S ribosomal RNA gene, partial sequence; tRNA-Val
            gene, complete sequence; and 16S ribosomal RNA gene,
            partial sequence; mitochondrial genes for mitochondrial
            products
          Length = 1844

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 86   tactagaaatcaacagaccaaaaaa 110
            |||||| ||||||||||||||||||
Sbjct: 1193 tactagcaatcaacagaccaaaaaa 1217
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>emb|BX572597.1| Rhodopseudomonas palustris CGA009 complete genome; segment 5/16
          Length = 349737

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 435    gccgtttcatctgctccgcttccag 459
              ||||||||||| |||||||||||||
Sbjct: 224574 gccgtttcatccgctccgcttccag 224550
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>gb|AC092814.2| Homo sapiens chromosome 1 clone RP11-565J7, complete sequence
          Length = 170245

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 309    cctttttcatctcagccaagg 329
              |||||||||||||||||||||
Sbjct: 137983 cctttttcatctcagccaagg 137963
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>emb|AL163636.7|CNS01RIK Human chromosome 14 DNA sequence BAC R-903H12 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 202337

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 303    ctttttcctttttcatctcag 323
              |||||||||||||||||||||
Sbjct: 191147 ctttttcctttttcatctcag 191127
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>emb|AL133371.3|CNS01DUW Human chromosome 14 DNA sequence BAC R-219E7 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 162472

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 303   ctttttcctttttcatctcag 323
             |||||||||||||||||||||
Sbjct: 11111 ctttttcctttttcatctcag 11091
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>gb|AC160526.13| Mus musculus chromosome 8, clone RP24-191C23, complete sequence
          Length = 174746

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 443  atctgctccgcttccagctc 462
            ||||||||||||||||||||
Sbjct: 3934 atctgctccgcttccagctc 3953
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>gb|AC099707.14| Mus musculus chromosome 1, clone RP23-329C7, complete sequence
          Length = 204557

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 355    tgatttagctgttttctgag 374
              ||||||||||||||||||||
Sbjct: 155990 tgatttagctgttttctgag 156009
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>gb|AE017354.1| Legionella pneumophila subsp. pneumophila str. Philadelphia 1, complete
               genome
          Length = 3397754

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 452     gcttccagctctttcttttccttt 475
               |||||||||||| |||||||||||
Sbjct: 1288210 gcttccagctctctcttttccttt 1288233
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>gb|AY596605.1| Saccharum officinarum clone SCQGLR1019F04, complete sequence
          Length = 2791

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 454  ttccagctctttcttttcct 473
            ||||||||||||||||||||
Sbjct: 1364 ttccagctctttcttttcct 1345
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>gb|AC153597.13| Mus musculus 6 BAC RP23-18K9 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 197694

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 305   ttttcctttttcatctcagc 324
             ||||||||||||||||||||
Sbjct: 55315 ttttcctttttcatctcagc 55296
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>gb|AC113483.7| Mus musculus chromosome 1, clone RP23-343E12, complete sequence
          Length = 207188

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 129    aattgttggcctcatcaaca 148
              ||||||||||||||||||||
Sbjct: 114580 aattgttggcctcatcaaca 114561
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>gb|BT011074.1| Drosophila melanogaster SD14261 full insert cDNA
          Length = 1487

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 91   gaaatcaacagaccaaaaaa 110
            ||||||||||||||||||||
Sbjct: 1455 gaaatcaacagaccaaaaaa 1474
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>emb|CR962127.1| Medicago truncatula chromosome 5 clone mth2-181n9, COMPLETE SEQUENCE
          Length = 119528

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 303  ctttttcctttttcatctca 322
            ||||||||||||||||||||
Sbjct: 7283 ctttttcctttttcatctca 7302
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>gb|AC125075.4| Mus musculus BAC clone RP23-468P13 from chromosome 19, complete
            sequence
          Length = 188709

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 304  tttttcctttttcatctcag 323
            ||||||||||||||||||||
Sbjct: 6765 tttttcctttttcatctcag 6784
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>gb|AC110818.5| Mus musculus BAC clone RP23-198H8 from 16, complete sequence
          Length = 182807

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 302   actttttcctttttcatctc 321
             ||||||||||||||||||||
Sbjct: 62637 actttttcctttttcatctc 62656
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>gb|BC055685.1| Mus musculus RIKEN cDNA D030041N04 gene, mRNA (cDNA clone MGC:66524
            IMAGE:6403034), complete cds
          Length = 2113

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 443  atctgctccgcttccagctc 462
            ||||||||||||||||||||
Sbjct: 1328 atctgctccgcttccagctc 1347
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>gb|AC156990.11| Mus musculus chromosome 8, clone RP23-322E23, complete sequence
          Length = 201790

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 443  atctgctccgcttccagctc 462
            ||||||||||||||||||||
Sbjct: 7990 atctgctccgcttccagctc 7971
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>gb|AC133571.47| Medicago truncatula clone mth2-10h12, complete sequence
          Length = 85905

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 303   ctttttcctttttcatctca 322
             ||||||||||||||||||||
Sbjct: 57551 ctttttcctttttcatctca 57532
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>gb|AC128952.4| Rattus norvegicus 14 BAC CH230-510F9 (Children's Hospital Oakland
              Research Institute) complete sequence
          Length = 170859

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 460    ctctttcttttccttttgaa 479
              ||||||||||||||||||||
Sbjct: 102828 ctctttcttttccttttgaa 102809
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>gb|AC078829.10| Oryza sativa chromosome 10 BAC OSJNBa0026O12 genomic sequence, complete
             sequence
          Length = 163279

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 94    atcaacagaccaaaaaattt 113
             ||||||||||||||||||||
Sbjct: 34149 atcaacagaccaaaaaattt 34130
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>dbj|AK163507.1| Mus musculus adult male corpora quadrigemina cDNA, RIKEN full-length
            enriched library, clone:B230315H08 product:hypothetical
            protein, full insert sequence
          Length = 1600

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 443  atctgctccgcttccagctc 462
            ||||||||||||||||||||
Sbjct: 1182 atctgctccgcttccagctc 1201
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>gb|AC156560.2| Mus musculus BAC clone RP24-358N14 from chromosome 13, complete sequence
          Length = 163493

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 355    tgatttagctgttttctgag 374
              ||||||||||||||||||||
Sbjct: 113551 tgatttagctgttttctgag 113532
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>dbj|AK031563.1| Mus musculus 13 days embryo male testis cDNA, RIKEN full-length
            enriched library, clone:6030453H13 product:hypothetical
            protein, full insert sequence
          Length = 2816

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 443  atctgctccgcttccagctc 462
            ||||||||||||||||||||
Sbjct: 1181 atctgctccgcttccagctc 1200
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 94       atcaacagaccaaaaaattt 113
                ||||||||||||||||||||
Sbjct: 17338130 atcaacagaccaaaaaattt 17338149
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>gb|AC155723.6| Mus musculus 6 BAC RP24-131B7 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 183349

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 305    ttttcctttttcatctcagc 324
              ||||||||||||||||||||
Sbjct: 179995 ttttcctttttcatctcagc 179976
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 94       atcaacagaccaaaaaattt 113
                ||||||||||||||||||||
Sbjct: 17347170 atcaacagaccaaaaaattt 17347189
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>emb|CT573053.1| Medicago truncatula chromosome 5 clone mte1-8e5, COMPLETE SEQUENCE
          Length = 106640

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 303    ctttttcctttttcatctca 322
              ||||||||||||||||||||
Sbjct: 103327 ctttttcctttttcatctca 103346
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>gb|BC050979.1| Mus musculus RIKEN cDNA D030041N04 gene, mRNA (cDNA clone
           IMAGE:6703931)
          Length = 1033

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 443 atctgctccgcttccagctc 462
           ||||||||||||||||||||
Sbjct: 233 atctgctccgcttccagctc 252
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>gb|AC003107.1|AC003107 Human DNA from chromosome 19-specific cosmid R30064 containing the COMP
             gene, genomic sequence, complete sequence
          Length = 46275

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 457   cagctctttcttttcctttt 476
             ||||||||||||||||||||
Sbjct: 39217 cagctctttcttttcctttt 39198
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>dbj|AP004542.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT08G20, TM0102a,
            complete sequence
          Length = 54472

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 463  tttcttttccttttgaaggc 482
            ||||||||||||||||||||
Sbjct: 8508 tttcttttccttttgaaggc 8527
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>gb|AC161166.7| Mus musculus chromosome 7, clone RP23-26A14, complete sequence
          Length = 250028

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 461   tctttcttttccttttgaag 480
             ||||||||||||||||||||
Sbjct: 65047 tctttcttttccttttgaag 65066
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>emb|AL833775.7| Mouse DNA sequence from clone RP23-135L5 on chromosome 4, complete
             sequence
          Length = 194640

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 456   ccagctctttcttttccttt 475
             ||||||||||||||||||||
Sbjct: 92566 ccagctctttcttttccttt 92547


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,705,894
Number of Sequences: 3902068
Number of extensions: 6705894
Number of successful extensions: 162608
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 162208
Number of HSP's gapped (non-prelim): 400
length of query: 582
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 559
effective length of database: 17,143,297,704
effective search space: 9583103416536
effective search space used: 9583103416536
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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