| Clone Name | rbags36a12 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK072665.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023133N19, full insert sequence Length = 1283 Score = 454 bits (229), Expect = e-124 Identities = 378/428 (88%) Strand = Plus / Minus Query: 85 aattatgacaattcagaaattagctcttgaaattcaaagacggtccagtcagctttggct 144 ||||||| |||||| |||||||| |||||||| || | ||| ||| || ||||| ||| Sbjct: 1034 aattatggcaattctgaaattagttcttgaaaatcgatgacaacccaatctgcttttgct 975 Query: 145 gcaactgcttctctcatctggacaccagcgtaacagatgaacaagtctgctccaccaggt 204 |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| Sbjct: 974 gcaactgcttctctcatctggacacctgcgtaacagatgaacaagtctgctcctccaggc 915 Query: 205 tgccgagcctcaagatcagtggcaccatctccaatcataaccaatgtactgtaaccatga 264 |||||||||||||||||||| |||||||||||||||||||| | ||| | |||||||| Sbjct: 914 tgccgagcctcaagatcagttgcaccatctccaatcataacaagtgtcttataaccatgg 855 Query: 265 tcctgtcttatttgttgcactgctactgctttacccccacttcgtgaagtgggctctgtg 324 | |||||| |||||||| ||||||| ||||||||||||||||||||||||||| || ||| Sbjct: 854 ttctgtctaatttgttggactgctagtgctttacccccacttcgtgaagtgggttcagtg 795 Query: 325 ggatcaaatccaacatactctccagatgatccaaatagcagttggtttgctatgatgttt 384 |||||||||||| ||||||||||||||| |||||| || ||||||||||| ||||||||| Sbjct: 794 ggatcaaatccagcatactctccagatgttccaaaaagaagttggtttgcaatgatgttt 735 Query: 385 tctgttggaatgccaagaccaaatgccacaggcttgatcatttgccggaaacctcctgac 444 || | ||||||||||| || |||||||||||||||||||||| || |||||||||||| Sbjct: 734 tcaggaggaatgccaagctcagatgccacaggcttgatcatttgtcgaaaacctcctgac 675 Query: 445 acaaggaatacttcagtattattagcttttaatgtcttaatcaaatcancgattccagga 504 ||||||||||| ||||||||||| ||||| | |||||||||| ||| | ||||||||| Sbjct: 674 acaaggaatacatcagtattatttgctttgagcttcttaatcaagtcagcaattccagga 615 Query: 505 gaaatcct 512 |||||||| Sbjct: 614 gaaatcct 607
>gb|AY103760.1| Zea mays PCO110275 mRNA sequence Length = 2705 Score = 325 bits (164), Expect = 9e-86 Identities = 352/415 (84%) Strand = Plus / Minus Query: 106 agctcttgaaattcaaagacggtccagtcagctttggctgcaactgcttctctcatctgg 165 ||||||||||| ||||| || ||||||||||| ||||| |||| ||||||||||| Sbjct: 938 agctcttgaaaatcaaaaaccacccagtcagcttgtgctgcgactggctctctcatctga 879 Query: 166 acaccagcgtaacagatgaacaagtctgctccaccaggttgccgagcctcaagatcagtg 225 || || |||||||||||||||||||||||||| ||||||||||||||||| |||||||| Sbjct: 878 accccggcgtaacagatgaacaagtctgctccgccaggttgccgagcctccagatcagtt 819 Query: 226 gcaccatctccaatcataaccaatgtactgtaaccatgatcctgtcttatttgttgcact 285 || ||||| ||||||||||| | ||| |||| ||||| |||||| ||||||| |||||| Sbjct: 818 gcgccatcaccaatcataacaactgtcttgtagccatggtcctgttttatttgctgcact 759 Query: 286 gctactgctttacccccacttcgtgaagtgggctctgtgggatcaaatccaacatactct 345 ||| ||||||||||||||| ||||||||||||||||||||||||||||| | ||||| Sbjct: 758 gcttttgctttacccccactgcgtgaagtgggctctgtgggatcaaatccggcgtactcc 699 Query: 346 ccagatgatccaaatagcagttggtttgctatgatgttttctgttggaatgccaagacca 405 || ||| ||||||| || ||||||||| |||||||||| | ||||||||||| || Sbjct: 698 cccaatgtgccaaataacaattggtttgcagtgatgttttcaggaggaatgccaagctca 639 Query: 406 aatgccacaggcttgatcatttgccggaaacctcctgacacaaggaatacttcagtatta 465 |||||||| || |||||||| || ||||| ||||||||||||||||| || ||| ||||| Sbjct: 638 aatgccactggtttgatcatgtgtcggaagcctcctgacacaaggaacacatcaatatta 579 Query: 466 ttagcttttaatgtcttaatcaaatcancgattccaggagaaatcctgggtggcc 520 || | ||||| |||||| ||||||| | ||||||||||||||||| ||||||| Sbjct: 578 ttggattttagcttcttaaccaaatcagccattccaggagaaatccttggtggcc 524
>dbj|AK111001.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-174-E12, full insert sequence Length = 1353 Score = 182 bits (92), Expect = 8e-43 Identities = 185/216 (85%) Strand = Plus / Minus Query: 144 tgcaactgcttctctcatctggacaccagcgtaacagatgaacaagtctgctccaccagg 203 |||||| ||||| |||||||| |||||||| || ||||| ||||||||||||||| ||| Sbjct: 943 tgcaaccgcttccctcatctgcacaccagcatagcagataaacaagtctgctccattagg 884 Query: 204 ttgccgagcctcaagatcagtggcaccatctccaatcataaccaatgtactgtaaccatg 263 ||||||||||||||||||||| ||||||||||||| ||||| | ||| ||||||||| Sbjct: 883 ttgccgagcctcaagatcagttgcaccatctccaaccataaagagtgtcctgtaaccaca 824 Query: 264 atcctgtcttatttgttgcactgctactgctttacccccacttcgtgaagtgggctctgt 323 | ||||||||| | ||| |||||||| ||||| || |||||||||||||| ||||||| Sbjct: 823 cttctgtcttatgttttgaactgctacagctttgcctccacttcgtgaagtaggctctga 764 Query: 324 gggatcaaatccaacatactctccagatgatccaaa 359 || ||||| ||||||||||||||||| | |||||| Sbjct: 763 agggtcaaaaccaacatactctccagaagttccaaa 728
>gb|AC109832.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone P0038B07, complete sequence Length = 149697 Score = 176 bits (89), Expect = 5e-41 Identities = 137/153 (89%) Strand = Plus / Plus Query: 266 cctgtcttatttgttgcactgctactgctttacccccacttcgtgaagtgggctctgtgg 325 ||||||| |||||||| ||||||| ||||||||||||||||||||||||||| || |||| Sbjct: 137427 cctgtctaatttgttggactgctagtgctttacccccacttcgtgaagtgggttcagtgg 137486 Query: 326 gatcaaatccaacatactctccagatgatccaaatagcagttggtttgctatgatgtttt 385 ||||||||||| ||||||||||||||| |||||| || ||||||||||| |||||||||| Sbjct: 137487 gatcaaatccagcatactctccagatgttccaaaaagaagttggtttgcaatgatgtttt 137546 Query: 386 ctgttggaatgccaagaccaaatgccacaggct 418 | | ||||||||||| || |||||||||||| Sbjct: 137547 caggaggaatgccaagctcagatgccacaggct 137579 Score = 139 bits (70), Expect = 1e-29 Identities = 115/130 (88%) Strand = Plus / Plus Query: 85 aattatgacaattcagaaattagctcttgaaattcaaagacggtccagtcagctttggct 144 ||||||| |||||| |||||||| |||||||| || | ||| ||| || ||||| ||| Sbjct: 136487 aattatggcaattctgaaattagttcttgaaaatcgatgacaacccaatctgcttttgct 136546 Query: 145 gcaactgcttctctcatctggacaccagcgtaacagatgaacaagtctgctccaccaggt 204 |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| Sbjct: 136547 gcaactgcttctctcatctggacacctgcgtaacagatgaacaagtctgctcctccaggc 136606 Query: 205 tgccgagcct 214 |||||||||| Sbjct: 136607 tgccgagcct 136616 Score = 107 bits (54), Expect = 4e-20 Identities = 86/97 (88%) Strand = Plus / Plus Query: 417 cttgatcatttgccggaaacctcctgacacaaggaatacttcagtattattagcttttaa 476 |||||||||||| || ||||||||||||||||||||||| ||||||||||| ||||| | Sbjct: 137957 cttgatcatttgtcgaaaacctcctgacacaaggaatacatcagtattatttgctttgag 138016 Query: 477 tgtcttaatcaaatcancgattccaggagaaatcctg 513 |||||||||| ||| | |||||||||||||||||| Sbjct: 138017 cttcttaatcaagtcagcaattccaggagaaatcctg 138053 Score = 60.0 bits (30), Expect = 8e-06 Identities = 33/34 (97%) Strand = Plus / Plus Query: 212 cctcaagatcagtggcaccatctccaatcataac 245 ||||||||||||| |||||||||||||||||||| Sbjct: 137296 cctcaagatcagttgcaccatctccaatcataac 137329
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 176 bits (89), Expect = 5e-41 Identities = 137/153 (89%) Strand = Plus / Plus Query: 266 cctgtcttatttgttgcactgctactgctttacccccacttcgtgaagtgggctctgtgg 325 ||||||| |||||||| ||||||| ||||||||||||||||||||||||||| || |||| Sbjct: 23801389 cctgtctaatttgttggactgctagtgctttacccccacttcgtgaagtgggttcagtgg 23801448 Query: 326 gatcaaatccaacatactctccagatgatccaaatagcagttggtttgctatgatgtttt 385 ||||||||||| ||||||||||||||| |||||| || ||||||||||| |||||||||| Sbjct: 23801449 gatcaaatccagcatactctccagatgttccaaaaagaagttggtttgcaatgatgtttt 23801508 Query: 386 ctgttggaatgccaagaccaaatgccacaggct 418 | | ||||||||||| || |||||||||||| Sbjct: 23801509 caggaggaatgccaagctcagatgccacaggct 23801541 Score = 139 bits (70), Expect = 1e-29 Identities = 115/130 (88%) Strand = Plus / Plus Query: 85 aattatgacaattcagaaattagctcttgaaattcaaagacggtccagtcagctttggct 144 ||||||| |||||| |||||||| |||||||| || | ||| ||| || ||||| ||| Sbjct: 23800449 aattatggcaattctgaaattagttcttgaaaatcgatgacaacccaatctgcttttgct 23800508 Query: 145 gcaactgcttctctcatctggacaccagcgtaacagatgaacaagtctgctccaccaggt 204 |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| Sbjct: 23800509 gcaactgcttctctcatctggacacctgcgtaacagatgaacaagtctgctcctccaggc 23800568 Query: 205 tgccgagcct 214 |||||||||| Sbjct: 23800569 tgccgagcct 23800578 Score = 107 bits (54), Expect = 4e-20 Identities = 86/97 (88%) Strand = Plus / Plus Query: 417 cttgatcatttgccggaaacctcctgacacaaggaatacttcagtattattagcttttaa 476 |||||||||||| || ||||||||||||||||||||||| ||||||||||| ||||| | Sbjct: 23801919 cttgatcatttgtcgaaaacctcctgacacaaggaatacatcagtattatttgctttgag 23801978 Query: 477 tgtcttaatcaaatcancgattccaggagaaatcctg 513 |||||||||| ||| | |||||||||||||||||| Sbjct: 23801979 cttcttaatcaagtcagcaattccaggagaaatcctg 23802015 Score = 60.0 bits (30), Expect = 8e-06 Identities = 33/34 (97%) Strand = Plus / Plus Query: 212 cctcaagatcagtggcaccatctccaatcataac 245 ||||||||||||| |||||||||||||||||||| Sbjct: 23801258 cctcaagatcagttgcaccatctccaatcataac 23801291
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 176 bits (89), Expect = 5e-41 Identities = 137/153 (89%) Strand = Plus / Plus Query: 266 cctgtcttatttgttgcactgctactgctttacccccacttcgtgaagtgggctctgtgg 325 ||||||| |||||||| ||||||| ||||||||||||||||||||||||||| || |||| Sbjct: 24113058 cctgtctaatttgttggactgctagtgctttacccccacttcgtgaagtgggttcagtgg 24113117 Query: 326 gatcaaatccaacatactctccagatgatccaaatagcagttggtttgctatgatgtttt 385 ||||||||||| ||||||||||||||| |||||| || ||||||||||| |||||||||| Sbjct: 24113118 gatcaaatccagcatactctccagatgttccaaaaagaagttggtttgcaatgatgtttt 24113177 Query: 386 ctgttggaatgccaagaccaaatgccacaggct 418 | | ||||||||||| || |||||||||||| Sbjct: 24113178 caggaggaatgccaagctcagatgccacaggct 24113210 Score = 139 bits (70), Expect = 1e-29 Identities = 115/130 (88%) Strand = Plus / Plus Query: 85 aattatgacaattcagaaattagctcttgaaattcaaagacggtccagtcagctttggct 144 ||||||| |||||| |||||||| |||||||| || | ||| ||| || ||||| ||| Sbjct: 24112118 aattatggcaattctgaaattagttcttgaaaatcgatgacaacccaatctgcttttgct 24112177 Query: 145 gcaactgcttctctcatctggacaccagcgtaacagatgaacaagtctgctccaccaggt 204 |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| Sbjct: 24112178 gcaactgcttctctcatctggacacctgcgtaacagatgaacaagtctgctcctccaggc 24112237 Query: 205 tgccgagcct 214 |||||||||| Sbjct: 24112238 tgccgagcct 24112247 Score = 107 bits (54), Expect = 4e-20 Identities = 86/97 (88%) Strand = Plus / Plus Query: 417 cttgatcatttgccggaaacctcctgacacaaggaatacttcagtattattagcttttaa 476 |||||||||||| || ||||||||||||||||||||||| ||||||||||| ||||| | Sbjct: 24113588 cttgatcatttgtcgaaaacctcctgacacaaggaatacatcagtattatttgctttgag 24113647 Query: 477 tgtcttaatcaaatcancgattccaggagaaatcctg 513 |||||||||| ||| | |||||||||||||||||| Sbjct: 24113648 cttcttaatcaagtcagcaattccaggagaaatcctg 24113684 Score = 60.0 bits (30), Expect = 8e-06 Identities = 33/34 (97%) Strand = Plus / Plus Query: 212 cctcaagatcagtggcaccatctccaatcataac 245 ||||||||||||| |||||||||||||||||||| Sbjct: 24112927 cctcaagatcagttgcaccatctccaatcataac 24112960
>gb|AF114171.1| Sorghum bicolor BAC clone 25.M18, complete sequence Length = 183990 Score = 121 bits (61), Expect = 2e-24 Identities = 130/153 (84%) Strand = Plus / Plus Query: 266 cctgtcttatttgttgcactgctactgctttacccccacttcgtgaagtgggctctgtgg 325 ||||| |||||| ||||||||| ||||||||||||||| ||||||||||||||||||| Sbjct: 148888 cctgttttattttctgcactgcttttgctttacccccactgcgtgaagtgggctctgtgg 148947 Query: 326 gatcaaatccaacatactctccagatgatccaaatagcagttggtttgctatgatgtttt 385 ||||||||||| ||||||| || || | ||||||| || ||||||||| ||||||||| Sbjct: 148948 gatcaaatccagcatactcccccgaagtgccaaataacaattggtttgcagtgatgtttt 149007 Query: 386 ctgttggaatgccaagaccaaatgccacaggct 418 | | ||||| ||||| |||||||||||||| Sbjct: 149008 caggaggaataccaagctgaaatgccacaggct 149040 Score = 121 bits (61), Expect = 2e-24 Identities = 97/109 (88%) Strand = Plus / Plus Query: 106 agctcttgaaattcaaagacggtccagtcagctttggctgcaactgcttctctcatctgg 165 ||||||||||| |||||||| |||||||||| ||||| |||| ||||||||||| Sbjct: 148164 agctcttgaaaatcaaagaccacccagtcagctaatgctgcgactggctctctcatctga 148223 Query: 166 acaccagcgtaacagatgaacaagtctgctccaccaggttgccgagcct 214 |||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 148224 acaccagcgtaacagatgaacaagtccgctccaccaggttgccgagcct 148272 Score = 83.8 bits (42), Expect = 5e-13 Identities = 83/97 (85%) Strand = Plus / Plus Query: 417 cttgatcatttgccggaaacctcctgacacaaggaatacttcagtattattagcttttaa 476 |||||||||||| ||||| ||||||||||||||||| || ||| ||||||| | ||||| Sbjct: 149357 cttgatcatttgtcggaagcctcctgacacaaggaacacatcaatattattggattttag 149416 Query: 477 tgtcttaatcaaatcancgattccaggagaaatcctg 513 |||||| |||||| | |||||||||||||||||| Sbjct: 149417 cttcttaactaaatcagccattccaggagaaatcctg 149453 Score = 44.1 bits (22), Expect = 0.47 Identities = 31/34 (91%) Strand = Plus / Plus Query: 212 cctcaagatcagtggcaccatctccaatcataac 245 |||| |||||||| |||||||| ||||||||||| Sbjct: 148763 cctccagatcagttgcaccatcaccaatcataac 148796
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 83.8 bits (42), Expect = 5e-13 Identities = 81/94 (86%) Strand = Plus / Plus Query: 266 cctgtcttatttgttgcactgctactgctttacccccacttcgtgaagtgggctctgtgg 325 |||||||||| | ||| |||||||| ||||| || |||||||||||||| ||||||| | Sbjct: 19189492 cctgtcttatgttttgaactgctacagctttgcctccacttcgtgaagtaggctctgaag 19189551 Query: 326 gatcaaatccaacatactctccagatgatccaaa 359 | ||||| ||||||||||||||||| | |||||| Sbjct: 19189552 ggtcaaaaccaacatactctccagaagttccaaa 19189585 Score = 77.8 bits (39), Expect = 3e-11 Identities = 63/71 (88%) Strand = Plus / Plus Query: 144 tgcaactgcttctctcatctggacaccagcgtaacagatgaacaagtctgctccaccagg 203 |||||| ||||| |||||||| |||||||| || ||||| ||||||||||||||| ||| Sbjct: 19188658 tgcaaccgcttccctcatctgcacaccagcatagcagataaacaagtctgctccattagg 19188717 Query: 204 ttgccgagcct 214 ||||||||||| Sbjct: 19188718 ttgccgagcct 19188728 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Plus Query: 212 cctcaagatcagtggcaccatctccaatcataaccaatgtactgtaacca 261 ||||||||||||| ||||||||||||| ||||| | ||| ||||||||| Sbjct: 19189363 cctcaagatcagttgcaccatctccaaccataaagagtgtcctgtaacca 19189412
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 83.8 bits (42), Expect = 5e-13 Identities = 81/94 (86%) Strand = Plus / Plus Query: 266 cctgtcttatttgttgcactgctactgctttacccccacttcgtgaagtgggctctgtgg 325 |||||||||| | ||| |||||||| ||||| || |||||||||||||| ||||||| | Sbjct: 19115719 cctgtcttatgttttgaactgctacagctttgcctccacttcgtgaagtaggctctgaag 19115778 Query: 326 gatcaaatccaacatactctccagatgatccaaa 359 | ||||| ||||||||||||||||| | |||||| Sbjct: 19115779 ggtcaaaaccaacatactctccagaagttccaaa 19115812 Score = 77.8 bits (39), Expect = 3e-11 Identities = 63/71 (88%) Strand = Plus / Plus Query: 144 tgcaactgcttctctcatctggacaccagcgtaacagatgaacaagtctgctccaccagg 203 |||||| ||||| |||||||| |||||||| || ||||| ||||||||||||||| ||| Sbjct: 19114885 tgcaaccgcttccctcatctgcacaccagcatagcagataaacaagtctgctccattagg 19114944 Query: 204 ttgccgagcct 214 ||||||||||| Sbjct: 19114945 ttgccgagcct 19114955 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Plus Query: 212 cctcaagatcagtggcaccatctccaatcataaccaatgtactgtaacca 261 ||||||||||||| ||||||||||||| ||||| | ||| ||||||||| Sbjct: 19115590 cctcaagatcagttgcaccatctccaaccataaagagtgtcctgtaacca 19115639
>emb|AL731752.4|CNS08C81 Oryza sativa chromosome 12, . BAC OJ1536_D01 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 127026 Score = 83.8 bits (42), Expect = 5e-13 Identities = 81/94 (86%) Strand = Plus / Minus Query: 266 cctgtcttatttgttgcactgctactgctttacccccacttcgtgaagtgggctctgtgg 325 |||||||||| | ||| |||||||| ||||| || |||||||||||||| ||||||| | Sbjct: 36489 cctgtcttatgttttgaactgctacagctttgcctccacttcgtgaagtaggctctgaag 36430 Query: 326 gatcaaatccaacatactctccagatgatccaaa 359 | ||||| ||||||||||||||||| | |||||| Sbjct: 36429 ggtcaaaaccaacatactctccagaagttccaaa 36396 Score = 77.8 bits (39), Expect = 3e-11 Identities = 63/71 (88%) Strand = Plus / Minus Query: 144 tgcaactgcttctctcatctggacaccagcgtaacagatgaacaagtctgctccaccagg 203 |||||| ||||| |||||||| |||||||| || ||||| ||||||||||||||| ||| Sbjct: 37323 tgcaaccgcttccctcatctgcacaccagcatagcagataaacaagtctgctccattagg 37264 Query: 204 ttgccgagcct 214 ||||||||||| Sbjct: 37263 ttgccgagcct 37253 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Minus Query: 212 cctcaagatcagtggcaccatctccaatcataaccaatgtactgtaacca 261 ||||||||||||| ||||||||||||| ||||| | ||| ||||||||| Sbjct: 36618 cctcaagatcagttgcaccatctccaaccataaagagtgtcctgtaacca 36569
>emb|AL731751.4|CNS08C80 Oryza sativa chromosome 12, . BAC OJ1510_A06 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 136155 Score = 83.8 bits (42), Expect = 5e-13 Identities = 81/94 (86%) Strand = Plus / Plus Query: 266 cctgtcttatttgttgcactgctactgctttacccccacttcgtgaagtgggctctgtgg 325 |||||||||| | ||| |||||||| ||||| || |||||||||||||| ||||||| | Sbjct: 22822 cctgtcttatgttttgaactgctacagctttgcctccacttcgtgaagtaggctctgaag 22881 Query: 326 gatcaaatccaacatactctccagatgatccaaa 359 | ||||| ||||||||||||||||| | |||||| Sbjct: 22882 ggtcaaaaccaacatactctccagaagttccaaa 22915 Score = 77.8 bits (39), Expect = 3e-11 Identities = 63/71 (88%) Strand = Plus / Plus Query: 144 tgcaactgcttctctcatctggacaccagcgtaacagatgaacaagtctgctccaccagg 203 |||||| ||||| |||||||| |||||||| || ||||| ||||||||||||||| ||| Sbjct: 21988 tgcaaccgcttccctcatctgcacaccagcatagcagataaacaagtctgctccattagg 22047 Query: 204 ttgccgagcct 214 ||||||||||| Sbjct: 22048 ttgccgagcct 22058 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Plus Query: 212 cctcaagatcagtggcaccatctccaatcataaccaatgtactgtaacca 261 ||||||||||||| ||||||||||||| ||||| | ||| ||||||||| Sbjct: 22693 cctcaagatcagttgcaccatctccaaccataaagagtgtcctgtaacca 22742
>emb|BX813714.1|CNS0ADSN Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB35ZG12 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 767 Score = 75.8 bits (38), Expect = 1e-10 Identities = 65/74 (87%) Strand = Plus / Minus Query: 169 ccagcgtaacagatgaacaagtctgctccaccaggttgccgagcctcaagatcagtggca 228 |||||||| || |||||||| |||||||||||||||| || || || |||||||| ||| Sbjct: 517 ccagcgtagcatatgaacaaatctgctccaccaggtttacgtgcttcgagatcagtagca 458 Query: 229 ccatctccaatcat 242 |||||||||||||| Sbjct: 457 ccatctccaatcat 444
>ref|NM_202129.1| Arabidopsis thaliana PSP (3-PHOSPHOSERINE PHOSPHATASE) AT1G18640 (PSP) transcript variant AT1G18640.2 mRNA, complete cds Length = 1188 Score = 67.9 bits (34), Expect = 3e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 169 ccagcgtaacagatgaacaagtctgctccaccaggttgccgagcctcaagatcagtggca 228 |||||||| || |||||||| ||||| |||||||||| || || || |||||||| ||| Sbjct: 943 ccagcgtagcatatgaacaaatctgcgccaccaggtttacgtgcttcgagatcagtagca 884 Query: 229 ccatctccaatcat 242 |||||||||||||| Sbjct: 883 ccatctccaatcat 870
>ref|NM_101722.3| Arabidopsis thaliana PSP (3-PHOSPHOSERINE PHOSPHATASE) AT1G18640 (PSP) transcript variant AT1G18640.1 mRNA, complete cds Length = 1140 Score = 67.9 bits (34), Expect = 3e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 169 ccagcgtaacagatgaacaagtctgctccaccaggttgccgagcctcaagatcagtggca 228 |||||||| || |||||||| ||||| |||||||||| || || || |||||||| ||| Sbjct: 943 ccagcgtagcatatgaacaaatctgcgccaccaggtttacgtgcttcgagatcagtagca 884 Query: 229 ccatctccaatcat 242 |||||||||||||| Sbjct: 883 ccatctccaatcat 870
>gb|AY096687.1| Arabidopsis thaliana putative 3-phosphoserine phosphatase (At1g18640) mRNA, complete cds Length = 919 Score = 67.9 bits (34), Expect = 3e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 169 ccagcgtaacagatgaacaagtctgctccaccaggttgccgagcctcaagatcagtggca 228 |||||||| || |||||||| ||||| |||||||||| || || || |||||||| ||| Sbjct: 806 ccagcgtagcatatgaacaaatctgcgccaccaggtttacgtgcttcgagatcagtagca 747 Query: 229 ccatctccaatcat 242 |||||||||||||| Sbjct: 746 ccatctccaatcat 733
>gb|AY065351.1| Arabidopsis thaliana putative 3-phosphoserine phosphatase (At1g18640) mRNA, complete cds Length = 1138 Score = 67.9 bits (34), Expect = 3e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 169 ccagcgtaacagatgaacaagtctgctccaccaggttgccgagcctcaagatcagtggca 228 |||||||| || |||||||| ||||| |||||||||| || || || |||||||| ||| Sbjct: 943 ccagcgtagcatatgaacaaatctgcgccaccaggtttacgtgcttcgagatcagtagca 884 Query: 229 ccatctccaatcat 242 |||||||||||||| Sbjct: 883 ccatctccaatcat 870
>emb|BX813791.1|CNS0ADTQ Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB3ZC03 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 393 Score = 67.9 bits (34), Expect = 3e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 169 ccagcgtaacagatgaacaagtctgctccaccaggttgccgagcctcaagatcagtggca 228 |||||||| || |||||||| ||||| |||||||||| || || || |||||||| ||| Sbjct: 196 ccagcgtagcatatgaacaaatctgcgccaccaggtttacgtgcttcgagatcagtagca 137 Query: 229 ccatctccaatcat 242 |||||||||||||| Sbjct: 136 ccatctccaatcat 123
>gb|AY087385.1| Arabidopsis thaliana clone 34821 mRNA, complete sequence Length = 1079 Score = 67.9 bits (34), Expect = 3e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 169 ccagcgtaacagatgaacaagtctgctccaccaggttgccgagcctcaagatcagtggca 228 |||||||| || |||||||| ||||| |||||||||| || || || |||||||| ||| Sbjct: 904 ccagcgtagcatatgaacaaatctgcgccaccaggtttacgtgcttcgagatcagtagca 845 Query: 229 ccatctccaatcat 242 |||||||||||||| Sbjct: 844 ccatctccaatcat 831
>dbj|AB018408.1| Arabidopsis thaliana mRNA for 3-phosphoserine phosphatase, complete cds Length = 1100 Score = 60.0 bits (30), Expect = 8e-06 Identities = 54/62 (87%) Strand = Plus / Minus Query: 181 atgaacaagtctgctccaccaggttgccgagcctcaagatcagtggcaccatctccaatc 240 |||||||| ||||| |||||||||| || || || |||||||| ||||||||||||||| Sbjct: 877 atgaacaaatctgcgccaccaggtttacgtgcttcgagatcagtagcaccatctccaatc 818 Query: 241 at 242 || Sbjct: 817 at 816
>gb|AC149136.3| Xenopus tropicalis clone CH216-164F21, complete sequence Length = 182684 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Plus Query: 499 ccaggagaaatcctgggtggcc 520 |||||||||||||||||||||| Sbjct: 171559 ccaggagaaatcctgggtggcc 171580
>gb|AC026238.2| Arabidopsis thaliana chromosome I BAC F25I16 genomic sequence, complete sequence Length = 44879 Score = 44.1 bits (22), Expect = 0.47 Identities = 25/26 (96%) Strand = Plus / Minus Query: 217 agatcagtggcaccatctccaatcat 242 |||||||| ||||||||||||||||| Sbjct: 4566 agatcagtagcaccatctccaatcat 4541
>emb|CT025645.16| Mouse DNA sequence from clone RP23-233D21 on chromosome 13, complete sequence Length = 225179 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Plus Query: 394 atgccaagaccaaatgccacag 415 |||||||||||||||||||||| Sbjct: 177015 atgccaagaccaaatgccacag 177036
>dbj|AB018409.1| Arabidopsis thaliana gene for 3-phosphoserin phosphatase, complete cds Length = 1734 Score = 44.1 bits (22), Expect = 0.47 Identities = 25/26 (96%) Strand = Plus / Minus Query: 217 agatcagtggcaccatctccaatcat 242 |||||||| ||||||||||||||||| Sbjct: 1510 agatcagtagcaccatctccaatcat 1485
>emb|AL161549.2|ATCHRIV49 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 49 Length = 199075 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 461 tattattagcttttaatgtct 481 ||||||||||||||||||||| Sbjct: 176305 tattattagcttttaatgtct 176285
>emb|AL021711.2|ATF13C5 Arabidopsis thaliana DNA chromosome 4, BAC clone F13C5 (ESSA project) Length = 119111 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 461 tattattagcttttaatgtct 481 ||||||||||||||||||||| Sbjct: 62935 tattattagcttttaatgtct 62915
>gb|AC154750.2| Mus musculus BAC clone RP24-399I16 from chromosome 17, complete sequence Length = 128778 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 344 ctccagatgatccaaatagcagttg 368 ||||||| ||||||||||||||||| Sbjct: 38097 ctccagaagatccaaatagcagttg 38073
>emb|BX470095.12| Zebrafish DNA sequence from clone DKEY-162H1 in linkage group 24, complete sequence Length = 209513 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 461 tattattagcttttaatgtct 481 ||||||||||||||||||||| Sbjct: 107076 tattattagcttttaatgtct 107096
>emb|BX649249.3| Zebrafish DNA sequence from clone DKEY-30M14 in linkage group 24, complete sequence Length = 47695 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 461 tattattagcttttaatgtct 481 ||||||||||||||||||||| Sbjct: 46093 tattattagcttttaatgtct 46073
>emb|BX004786.8| Zebrafish DNA sequence from clone DKEY-1P6 in linkage group 24, complete sequence Length = 178232 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 461 tattattagcttttaatgtct 481 ||||||||||||||||||||| Sbjct: 64111 tattattagcttttaatgtct 64131
>ref|NM_119500.4| Arabidopsis thaliana ATNAP13 AT4G33460 (ATNAP13) mRNA, complete cds Length = 1106 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 395 tgccaagaccaaatgccaca 414 |||||||||||||||||||| Sbjct: 499 tgccaagaccaaatgccaca 480
>ref|XM_519106.1| PREDICTED: Pan troglodytes LOC463420 (LOC463420), mRNA Length = 1419 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 223 gtggcaccatctccaatcat 242 |||||||||||||||||||| Sbjct: 1004 gtggcaccatctccaatcat 985
>gb|BT018610.1| Zea mays clone EL01N0450G11.d mRNA sequence Length = 1566 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 335 caacatactctccagatgat 354 |||||||||||||||||||| Sbjct: 731 caacatactctccagatgat 750
>gb|AC132852.12| Mus musculus chromosome 9, clone RP24-298N7, complete sequence Length = 183786 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 450 gaatacttcagtattattag 469 |||||||||||||||||||| Sbjct: 120022 gaatacttcagtattattag 120003
>gb|AC116383.11| Mus musculus chromosome 5, clone RP23-15P21, complete sequence Length = 259299 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 463 ttattagcttttaatgtctt 482 |||||||||||||||||||| Sbjct: 186298 ttattagcttttaatgtctt 186279
>gb|BT010649.1| Arabidopsis thaliana At4g33460 gene, complete cds Length = 816 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 395 tgccaagaccaaatgccaca 414 |||||||||||||||||||| Sbjct: 397 tgccaagaccaaatgccaca 378
>gb|AY135648.1| Branchiostoma floridae Hox gene, complete cds Length = 38796 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 179 agatgaacaagtctgctcca 198 |||||||||||||||||||| Sbjct: 19917 agatgaacaagtctgctcca 19936
>ref|NM_004577.3| Homo sapiens phosphoserine phosphatase (PSPH), mRNA Length = 2142 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 223 gtggcaccatctccaatcat 242 |||||||||||||||||||| Sbjct: 1274 gtggcaccatctccaatcat 1255
>gb|AY142518.1| Arabidopsis thaliana unknown protein (At4g33460) mRNA, complete cds Length = 847 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 395 tgccaagaccaaatgccaca 414 |||||||||||||||||||| Sbjct: 397 tgccaagaccaaatgccaca 378
>emb|BX537439.1|HSM805743 Homo sapiens mRNA; cDNA DKFZp686H1674 (from clone DKFZp686H1674); complete cds Length = 2196 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 223 gtggcaccatctccaatcat 242 |||||||||||||||||||| Sbjct: 1244 gtggcaccatctccaatcat 1225
>emb|AL161583.2|ATCHRIV79 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 79 Length = 199536 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 395 tgccaagaccaaatgccaca 414 |||||||||||||||||||| Sbjct: 127162 tgccaagaccaaatgccaca 127181
>emb|AL035678.1|ATF17M5 Arabidopsis thaliana DNA chromosome 4, BAC clone F17M5 (ESSA project) Length = 96475 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 395 tgccaagaccaaatgccaca 414 |||||||||||||||||||| Sbjct: 62383 tgccaagaccaaatgccaca 62402
>emb|AJ551449.1|BFL551449 Branchiostoma floridae partial gene for homeobox protein AmphiTlx, exons 1-3 Length = 10535 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 179 agatgaacaagtctgctcca 198 |||||||||||||||||||| Sbjct: 1868 agatgaacaagtctgctcca 1849
>emb|BX908767.8| Zebrafish DNA sequence from clone DKEY-66B12 in linkage group 3, complete sequence Length = 177868 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 275 tttgttgcactgctactgct 294 |||||||||||||||||||| Sbjct: 143664 tttgttgcactgctactgct 143683
>emb|CR858770.1| Pongo pygmaeus mRNA; cDNA DKFZp468A2313 (from clone DKFZp468A2313) Length = 1727 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 223 gtggcaccatctccaatcat 242 |||||||||||||||||||| Sbjct: 886 gtggcaccatctccaatcat 867
>emb|BX664719.14| Zebrafish DNA sequence from clone DKEY-159I6 in linkage group 7, complete sequence Length = 181105 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 272 ttatttgttgcactgctact 291 |||||||||||||||||||| Sbjct: 62297 ttatttgttgcactgctact 62316
>emb|CR625244.1| full-length cDNA clone CS0DC028YI05 of Neuroblastoma Cot 25-normalized of Homo sapiens (human) Length = 1488 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 223 gtggcaccatctccaatcat 242 |||||||||||||||||||| Sbjct: 683 gtggcaccatctccaatcat 664
>emb|CR623342.1| full-length cDNA clone CS0DD002YE11 of Neuroblastoma Cot 50-normalized of Homo sapiens (human) Length = 1357 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 223 gtggcaccatctccaatcat 242 |||||||||||||||||||| Sbjct: 555 gtggcaccatctccaatcat 536
>emb|CR592060.1| full-length cDNA clone CS0DC017YF09 of Neuroblastoma Cot 25-normalized of Homo sapiens (human) Length = 1699 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 223 gtggcaccatctccaatcat 242 |||||||||||||||||||| Sbjct: 908 gtggcaccatctccaatcat 889
>gb|AC092579.3| Homo sapiens BAC clone RP11-15K19 from 7, complete sequence Length = 118958 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 223 gtggcaccatctccaatcat 242 |||||||||||||||||||| Sbjct: 74427 gtggcaccatctccaatcat 74446
>dbj|AK220760.1| Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL22-18-J24 Length = 1242 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 395 tgccaagaccaaatgccaca 414 |||||||||||||||||||| Sbjct: 550 tgccaagaccaaatgccaca 531
>gb|AY129331.1| Mycobacteriophage CJW1, complete genome Length = 75931 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 191 ctgctccaccaggttgccga 210 |||||||||||||||||||| Sbjct: 32257 ctgctccaccaggttgccga 32238
>emb|BX827264.1|CNS0A3QJ Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS2ZG02 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1107 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 395 tgccaagaccaaatgccaca 414 |||||||||||||||||||| Sbjct: 499 tgccaagaccaaatgccaca 480
>dbj|AK223508.1| Homo sapiens mRNA for phosphoserine phosphatase variant, clone: FCC121G08 Length = 908 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 223 gtggcaccatctccaatcat 242 |||||||||||||||||||| Sbjct: 564 gtggcaccatctccaatcat 545
>gb|BC063614.1| Homo sapiens phosphoserine phosphatase, mRNA (cDNA clone MGC:70912 IMAGE:3850060), complete cds Length = 1987 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 223 gtggcaccatctccaatcat 242 |||||||||||||||||||| Sbjct: 1122 gtggcaccatctccaatcat 1103
>emb|AL831734.10| Mouse DNA sequence from clone RP23-426J13 on chromosome X, complete sequence Length = 208106 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 458 cagtattattagcttttaat 477 |||||||||||||||||||| Sbjct: 145245 cagtattattagcttttaat 145264
>emb|Y10275.1|HSPSPASE H.sapiens mRNA for L-3-phosphoserine phosphatase Length = 1600 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 223 gtggcaccatctccaatcat 242 |||||||||||||||||||| Sbjct: 732 gtggcaccatctccaatcat 713 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,623,063 Number of Sequences: 3902068 Number of extensions: 4623063 Number of successful extensions: 96452 Number of sequences better than 10.0: 56 Number of HSP's better than 10.0 without gapping: 56 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 96237 Number of HSP's gapped (non-prelim): 214 length of query: 537 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 514 effective length of database: 17,143,297,704 effective search space: 8811655019856 effective search space used: 8811655019856 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)