ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags35l07 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_476610.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3670 Score = 224 bits (113), Expect = 2e-55 Identities = 278/333 (83%) Strand = Plus / Minus Query: 162 ctagattgatgaaagatcctcgtacacagacttaatcccaggcctttcggagaccggtcg 221 ||||||||||||||||||||| ||||||||||| |||||||| ||||| |||||||| || Sbjct: 3652 ctagattgatgaaagatcctcatacacagacttgatcccaggtctttcagagaccggccg 3593 Query: 222 aatgcatctcaacgcaatgcccagcacctccttcatgcccttcaccccctgcgggttctc 281 ||||||||||| |||||||||||||| |||||||||||||| || ||||||| Sbjct: 3592 gatgcatctcaaggcaatgcccagcacatccttcatgcccttgacagaaacttggttctc 3533 Query: 282 cgagtctaaagccatggccgggtcaaagcactccgatccttggtcttccgccacccgcag 341 || ||| |||||||||| || |||||||| || ||||| | |||| ||||||||||| Sbjct: 3532 agaatctgaagccatggctggatcaaagcaatctgatccccgaccttcagccacccgcag 3473 Query: 342 ccggacccagtccgtgaggtcgacgccgccttcagaacccgtgatgacatcaccggcgca 401 |||||||| || || ||||| || || ||||||||||||| || ||||| || || || Sbjct: 3472 acggacccaatcagtcaggtcaacaccaccttcagaacccgagacaacatccccagcaca 3413 Query: 402 ccggccagtcaggagctccagtagcgcaacaccaaaggcgtagacatcagacttgaacga 461 || |||||| ||||||||||| ||| | ||||| |||||||| || |||||||||||||| Sbjct: 3412 cctgccagttaggagctccagcagcacgacaccgaaggcgtacacgtcagacttgaacga 3353 Query: 462 aggggatggcttcttggatgccgccagctctgg 494 || |||||||||||||| || || |||||||| Sbjct: 3352 gggagatggcttcttggacgctgctagctctgg 3320
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 224 bits (113), Expect = 2e-55 Identities = 278/333 (83%) Strand = Plus / Plus Query: 162 ctagattgatgaaagatcctcgtacacagacttaatcccaggcctttcggagaccggtcg 221 ||||||||||||||||||||| ||||||||||| |||||||| ||||| |||||||| || Sbjct: 2345980 ctagattgatgaaagatcctcatacacagacttgatcccaggtctttcagagaccggccg 2346039 Query: 222 aatgcatctcaacgcaatgcccagcacctccttcatgcccttcaccccctgcgggttctc 281 ||||||||||| |||||||||||||| |||||||||||||| || ||||||| Sbjct: 2346040 gatgcatctcaaggcaatgcccagcacatccttcatgcccttgacagaaacttggttctc 2346099 Query: 282 cgagtctaaagccatggccgggtcaaagcactccgatccttggtcttccgccacccgcag 341 || ||| |||||||||| || |||||||| || ||||| | |||| ||||||||||| Sbjct: 2346100 agaatctgaagccatggctggatcaaagcaatctgatccccgaccttcagccacccgcag 2346159 Query: 342 ccggacccagtccgtgaggtcgacgccgccttcagaacccgtgatgacatcaccggcgca 401 |||||||| || || ||||| || || ||||||||||||| || ||||| || || || Sbjct: 2346160 acggacccaatcagtcaggtcaacaccaccttcagaacccgagacaacatccccagcaca 2346219 Query: 402 ccggccagtcaggagctccagtagcgcaacaccaaaggcgtagacatcagacttgaacga 461 || |||||| ||||||||||| ||| | ||||| |||||||| || |||||||||||||| Sbjct: 2346220 cctgccagttaggagctccagcagcacgacaccgaaggcgtacacgtcagacttgaacga 2346279 Query: 462 aggggatggcttcttggatgccgccagctctgg 494 || |||||||||||||| || || |||||||| Sbjct: 2346280 gggagatggcttcttggacgctgctagctctgg 2346312 Score = 42.1 bits (21), Expect = 1.7 Identities = 30/33 (90%) Strand = Plus / Plus Query: 33 tgagacatgccatctcaacttgcaggcatcaag 65 ||||||||||||| | |||||| |||||||||| Sbjct: 2345828 tgagacatgccatatgaacttggaggcatcaag 2345860
>dbj|AP005473.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0077B15 Length = 139345 Score = 224 bits (113), Expect = 2e-55 Identities = 278/333 (83%) Strand = Plus / Plus Query: 162 ctagattgatgaaagatcctcgtacacagacttaatcccaggcctttcggagaccggtcg 221 ||||||||||||||||||||| ||||||||||| |||||||| ||||| |||||||| || Sbjct: 48988 ctagattgatgaaagatcctcatacacagacttgatcccaggtctttcagagaccggccg 49047 Query: 222 aatgcatctcaacgcaatgcccagcacctccttcatgcccttcaccccctgcgggttctc 281 ||||||||||| |||||||||||||| |||||||||||||| || ||||||| Sbjct: 49048 gatgcatctcaaggcaatgcccagcacatccttcatgcccttgacagaaacttggttctc 49107 Query: 282 cgagtctaaagccatggccgggtcaaagcactccgatccttggtcttccgccacccgcag 341 || ||| |||||||||| || |||||||| || ||||| | |||| ||||||||||| Sbjct: 49108 agaatctgaagccatggctggatcaaagcaatctgatccccgaccttcagccacccgcag 49167 Query: 342 ccggacccagtccgtgaggtcgacgccgccttcagaacccgtgatgacatcaccggcgca 401 |||||||| || || ||||| || || ||||||||||||| || ||||| || || || Sbjct: 49168 acggacccaatcagtcaggtcaacaccaccttcagaacccgagacaacatccccagcaca 49227 Query: 402 ccggccagtcaggagctccagtagcgcaacaccaaaggcgtagacatcagacttgaacga 461 || |||||| ||||||||||| ||| | ||||| |||||||| || |||||||||||||| Sbjct: 49228 cctgccagttaggagctccagcagcacgacaccgaaggcgtacacgtcagacttgaacga 49287 Query: 462 aggggatggcttcttggatgccgccagctctgg 494 || |||||||||||||| || || |||||||| Sbjct: 49288 gggagatggcttcttggacgctgctagctctgg 49320 Score = 42.1 bits (21), Expect = 1.7 Identities = 30/33 (90%) Strand = Plus / Plus Query: 33 tgagacatgccatctcaacttgcaggcatcaag 65 ||||||||||||| | |||||| |||||||||| Sbjct: 48836 tgagacatgccatatgaacttggaggcatcaag 48868
>dbj|AK103262.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033124E23, full insert sequence Length = 4032 Score = 224 bits (113), Expect = 2e-55 Identities = 278/333 (83%) Strand = Plus / Minus Query: 162 ctagattgatgaaagatcctcgtacacagacttaatcccaggcctttcggagaccggtcg 221 ||||||||||||||||||||| ||||||||||| |||||||| ||||| |||||||| || Sbjct: 3651 ctagattgatgaaagatcctcatacacagacttgatcccaggtctttcagagaccggccg 3592 Query: 222 aatgcatctcaacgcaatgcccagcacctccttcatgcccttcaccccctgcgggttctc 281 ||||||||||| |||||||||||||| |||||||||||||| || ||||||| Sbjct: 3591 gatgcatctcaaggcaatgcccagcacatccttcatgcccttgacagaaacttggttctc 3532 Query: 282 cgagtctaaagccatggccgggtcaaagcactccgatccttggtcttccgccacccgcag 341 || ||| |||||||||| || |||||||| || ||||| | |||| ||||||||||| Sbjct: 3531 agaatctgaagccatggctggatcaaagcaatctgatccccgaccttcagccacccgcag 3472 Query: 342 ccggacccagtccgtgaggtcgacgccgccttcagaacccgtgatgacatcaccggcgca 401 |||||||| || || ||||| || || ||||||||||||| || ||||| || || || Sbjct: 3471 acggacccaatcagtcaggtcaacaccaccttcagaacccgagacaacatccccagcaca 3412 Query: 402 ccggccagtcaggagctccagtagcgcaacaccaaaggcgtagacatcagacttgaacga 461 || |||||| ||||||||||| ||| | ||||| |||||||| || |||||||||||||| Sbjct: 3411 cctgccagttaggagctccagcagcacgacaccgaaggcgtacacgtcagacttgaacga 3352 Query: 462 aggggatggcttcttggatgccgccagctctgg 494 || |||||||||||||| || || |||||||| Sbjct: 3351 gggagatggcttcttggacgctgctagctctgg 3319 Score = 42.1 bits (21), Expect = 1.7 Identities = 30/33 (90%) Strand = Plus / Minus Query: 33 tgagacatgccatctcaacttgcaggcatcaag 65 ||||||||||||| | |||||| |||||||||| Sbjct: 3803 tgagacatgccatatgaacttggaggcatcaag 3771
>dbj|AP003824.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1343_B12 Length = 121362 Score = 224 bits (113), Expect = 2e-55 Identities = 278/333 (83%) Strand = Plus / Plus Query: 162 ctagattgatgaaagatcctcgtacacagacttaatcccaggcctttcggagaccggtcg 221 ||||||||||||||||||||| ||||||||||| |||||||| ||||| |||||||| || Sbjct: 119679 ctagattgatgaaagatcctcatacacagacttgatcccaggtctttcagagaccggccg 119738 Query: 222 aatgcatctcaacgcaatgcccagcacctccttcatgcccttcaccccctgcgggttctc 281 ||||||||||| |||||||||||||| |||||||||||||| || ||||||| Sbjct: 119739 gatgcatctcaaggcaatgcccagcacatccttcatgcccttgacagaaacttggttctc 119798 Query: 282 cgagtctaaagccatggccgggtcaaagcactccgatccttggtcttccgccacccgcag 341 || ||| |||||||||| || |||||||| || ||||| | |||| ||||||||||| Sbjct: 119799 agaatctgaagccatggctggatcaaagcaatctgatccccgaccttcagccacccgcag 119858 Query: 342 ccggacccagtccgtgaggtcgacgccgccttcagaacccgtgatgacatcaccggcgca 401 |||||||| || || ||||| || || ||||||||||||| || ||||| || || || Sbjct: 119859 acggacccaatcagtcaggtcaacaccaccttcagaacccgagacaacatccccagcaca 119918 Query: 402 ccggccagtcaggagctccagtagcgcaacaccaaaggcgtagacatcagacttgaacga 461 || |||||| ||||||||||| ||| | ||||| |||||||| || |||||||||||||| Sbjct: 119919 cctgccagttaggagctccagcagcacgacaccgaaggcgtacacgtcagacttgaacga 119978 Query: 462 aggggatggcttcttggatgccgccagctctgg 494 || |||||||||||||| || || |||||||| Sbjct: 119979 gggagatggcttcttggacgctgctagctctgg 120011 Score = 42.1 bits (21), Expect = 1.7 Identities = 30/33 (90%) Strand = Plus / Plus Query: 33 tgagacatgccatctcaacttgcaggcatcaag 65 ||||||||||||| | |||||| |||||||||| Sbjct: 119527 tgagacatgccatatgaacttggaggcatcaag 119559
>ref|NM_191406.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2691 Score = 44.1 bits (22), Expect = 0.43 Identities = 28/30 (93%) Strand = Plus / Minus Query: 423 tagcgcaacaccaaaggcgtagacatcaga 452 |||| |||||||||||| |||||||||||| Sbjct: 2205 tagcacaacaccaaaggagtagacatcaga 2176
>gb|AY372404.1| Medicago truncatula LysM domain-containing receptor-like kinase 6 (LYK6) gene, complete cds Length = 4295 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Minus Query: 428 caacaccaaaggcgtagacatc 449 |||||||||||||||||||||| Sbjct: 3430 caacaccaaaggcgtagacatc 3409
>gb|AY379776.1| Medicago truncatula strain Jemalong A17 chromosome 5 clone MtH1-052O10, complete sequence Length = 61009 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Minus Query: 428 caacaccaaaggcgtagacatc 449 |||||||||||||||||||||| Sbjct: 54212 caacaccaaaggcgtagacatc 54191
>gb|AC123570.7| Medicago truncatula clone mth2-33l22, complete sequence Length = 95559 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Minus Query: 428 caacaccaaaggcgtagacatc 449 |||||||||||||||||||||| Sbjct: 66823 caacaccaaaggcgtagacatc 66802
>gb|AC147960.8| Medicago truncatula clone mth2-27f16, complete sequence Length = 53944 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 428 caacaccaaaggcgtagacatc 449 |||||||||||||||||||||| Sbjct: 17445 caacaccaaaggcgtagacatc 17466
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 44.1 bits (22), Expect = 0.43 Identities = 28/30 (93%) Strand = Plus / Minus Query: 423 tagcgcaacaccaaaggcgtagacatcaga 452 |||| |||||||||||| |||||||||||| Sbjct: 32457568 tagcacaacaccaaaggagtagacatcaga 32457539
>dbj|AP003106.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0665A11 Length = 166421 Score = 44.1 bits (22), Expect = 0.43 Identities = 28/30 (93%) Strand = Plus / Minus Query: 423 tagcgcaacaccaaaggcgtagacatcaga 452 |||| |||||||||||| |||||||||||| Sbjct: 45089 tagcacaacaccaaaggagtagacatcaga 45060
>dbj|AP003371.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1143G03 Length = 137770 Score = 44.1 bits (22), Expect = 0.43 Identities = 28/30 (93%) Strand = Plus / Minus Query: 423 tagcgcaacaccaaaggcgtagacatcaga 452 |||| |||||||||||| |||||||||||| Sbjct: 137065 tagcacaacaccaaaggagtagacatcaga 137036
>dbj|AK105465.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-126-A03, full insert sequence Length = 1761 Score = 44.1 bits (22), Expect = 0.43 Identities = 28/30 (93%) Strand = Plus / Minus Query: 423 tagcgcaacaccaaaggcgtagacatcaga 452 |||| |||||||||||| |||||||||||| Sbjct: 1018 tagcacaacaccaaaggagtagacatcaga 989
>dbj|AK101775.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033064M23, full insert sequence Length = 3155 Score = 44.1 bits (22), Expect = 0.43 Identities = 28/30 (93%) Strand = Plus / Minus Query: 423 tagcgcaacaccaaaggcgtagacatcaga 452 |||| |||||||||||| |||||||||||| Sbjct: 2435 tagcacaacaccaaaggagtagacatcaga 2406
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 329 ccgccacccgcagccggacccagtc 353 |||| |||||||||||||||||||| Sbjct: 4738106 ccgcgacccgcagccggacccagtc 4738130
>ref|NM_126868.2| Arabidopsis thaliana unknown protein AT2G11910 transcript variant AT2G11910.1 mRNA, complete cds Length = 830 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 249 ctccttcatgcccttcaccccctg 272 ||||||||| |||||||||||||| Sbjct: 468 ctccttcatccccttcaccccctg 445
>ref|NM_179619.1| Arabidopsis thaliana unknown protein AT2G11910 transcript variant AT2G11910.2 mRNA, complete cds Length = 727 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 249 ctccttcatgcccttcaccccctg 272 ||||||||| |||||||||||||| Sbjct: 365 ctccttcatccccttcaccccctg 342
>gb|DP000017.1| Sus scrofa target 1 genomic scaffold Length = 1471440 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 245 gcacctccttcatgcccttc 264 |||||||||||||||||||| Sbjct: 382932 gcacctccttcatgcccttc 382913
>gb|BT019434.1| Synthetic construct Homo sapiens multiple endocrine neoplasia I mRNA, partial cds Length = 1833 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 242 ccagcacctccttcatgcccttca 265 |||||| ||||||||||||||||| Sbjct: 1696 ccagcagctccttcatgcccttca 1673
>gb|DQ494207.1|DQ494205S3 Meleagris gallopavo cytochrome P450 CYP1A5 gene, exons 4 through 7 and partial cds Length = 637 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 248 cctccttcatgcccttcacc 267 |||||||||||||||||||| Sbjct: 234 cctccttcatgcccttcacc 253
>gb|AC087424.2| Sus scrofa clone RP44-56M21, complete sequence Length = 163787 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 245 gcacctccttcatgcccttc 264 |||||||||||||||||||| Sbjct: 150730 gcacctccttcatgcccttc 150711
>gb|AC087423.2| Sus scrofa clone RP44-55G2, complete sequence Length = 150305 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 245 gcacctccttcatgcccttc 264 |||||||||||||||||||| Sbjct: 4932 gcacctccttcatgcccttc 4913
>gb|BC002664.2| Homo sapiens multiple endocrine neoplasia I, mRNA (cDNA clone IMAGE:3605739), partial cds Length = 1682 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 242 ccagcacctccttcatgcccttca 265 |||||| ||||||||||||||||| Sbjct: 715 ccagcagctccttcatgcccttca 692
>gb|BC002544.2| Homo sapiens multiple endocrine neoplasia I, mRNA (cDNA clone MGC:1554 IMAGE:3138471), complete cds Length = 2624 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 242 ccagcacctccttcatgcccttca 265 |||||| ||||||||||||||||| Sbjct: 1659 ccagcagctccttcatgcccttca 1636
>gb|BC001802.1| Homo sapiens cDNA clone IMAGE:3355546, **** WARNING: chimeric clone **** Length = 1994 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 242 ccagcacctccttcatgcccttca 265 |||||| ||||||||||||||||| Sbjct: 1029 ccagcagctccttcatgcccttca 1006
>ref|NM_130804.1| Homo sapiens multiple endocrine neoplasia I (MEN1), transcript variant e1F1, mRNA Length = 3053 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 242 ccagcacctccttcatgcccttca 265 |||||| ||||||||||||||||| Sbjct: 2087 ccagcagctccttcatgcccttca 2064
>ref|NM_130802.1| Homo sapiens multiple endocrine neoplasia I (MEN1), transcript variant e1D, mRNA Length = 3174 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 242 ccagcacctccttcatgcccttca 265 |||||| ||||||||||||||||| Sbjct: 2208 ccagcagctccttcatgcccttca 2185
>ref|NM_130799.1| Homo sapiens multiple endocrine neoplasia I (MEN1), transcript variant 2, mRNA Length = 2772 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 242 ccagcacctccttcatgcccttca 265 |||||| ||||||||||||||||| Sbjct: 1806 ccagcagctccttcatgcccttca 1783
>ref|NM_130803.1| Homo sapiens multiple endocrine neoplasia I (MEN1), transcript variant e1E, mRNA Length = 3181 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 242 ccagcacctccttcatgcccttca 265 |||||| ||||||||||||||||| Sbjct: 2215 ccagcagctccttcatgcccttca 2192
>ref|NM_000244.2| Homo sapiens multiple endocrine neoplasia I (MEN1), transcript variant 1, mRNA Length = 2787 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 242 ccagcacctccttcatgcccttca 265 |||||| ||||||||||||||||| Sbjct: 1821 ccagcagctccttcatgcccttca 1798
>ref|NM_130800.1| Homo sapiens multiple endocrine neoplasia I (MEN1), transcript variant e1B, mRNA Length = 2750 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 242 ccagcacctccttcatgcccttca 265 |||||| ||||||||||||||||| Sbjct: 1784 ccagcagctccttcatgcccttca 1761
>ref|NM_130801.1| Homo sapiens multiple endocrine neoplasia I (MEN1), transcript variant e1C, mRNA Length = 2738 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 242 ccagcacctccttcatgcccttca 265 |||||| ||||||||||||||||| Sbjct: 1772 ccagcagctccttcatgcccttca 1749
>emb|AL590702.17| Human DNA sequence from clone RP13-371D18 on chromosome 6 Contains the 5' end of a novel gene (CD001, BM-021, FLJ11240), a nucleophosmin (nucleolar phosphoprotein B23, numatrin) (NPM1) pseudogene, a glyceraldehyde-3-phosphate dehydrogenase (GAPD) pseudogene and a CpG island, complete sequence Length = 113587 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 194 taatcccaggcctttcggagaccg 217 ||||||||| |||||||||||||| Sbjct: 32867 taatcccagccctttcggagaccg 32844
>emb|X99454.1|GGCYP1A5 G.gallus mRNA for CYP1A5 Length = 1845 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 248 cctccttcatgcccttcacc 267 |||||||||||||||||||| Sbjct: 1310 cctccttcatgcccttcacc 1329
>gb|AY117199.1| Arabidopsis thaliana unknown protein (At2g11910) mRNA, complete cds Length = 538 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 249 ctccttcatgcccttcaccccctg 272 ||||||||| |||||||||||||| Sbjct: 322 ctccttcatccccttcaccccctg 299
>gb|AY063799.1| Arabidopsis thaliana unknown protein (At2g11910) mRNA, complete cds Length = 743 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 249 ctccttcatgcccttcaccccctg 272 ||||||||| |||||||||||||| Sbjct: 365 ctccttcatccccttcaccccctg 342
>gb|AC124904.3| Equus caballus clone CH241-137P22, complete sequence Length = 95553 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 245 gcacctccttcatgcccttc 264 |||||||||||||||||||| Sbjct: 28551 gcacctccttcatgcccttc 28532
>ref|NM_205146.1| Gallus gallus cytochrome P450, family 1, subfamily A, polypeptide 1 (CYP1A1), mRNA Length = 1845 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 248 cctccttcatgcccttcacc 267 |||||||||||||||||||| Sbjct: 1310 cctccttcatgcccttcacc 1329
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 357 gaggtcgacgccgccttcag 376 |||||||||||||||||||| Sbjct: 1215036 gaggtcgacgccgccttcag 1215017
>emb|CR605845.1| full-length cDNA clone CS0DL011YI20 of B cells (Ramos cell line) Cot 25-normalized of Homo sapiens (human) Length = 2916 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 242 ccagcacctccttcatgcccttca 265 |||||| ||||||||||||||||| Sbjct: 2002 ccagcagctccttcatgcccttca 1979
>gb|AC007045.5| Arabidopsis thaliana chromosome 2 clone F23M2 map mi421, complete sequence Length = 117945 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 249 ctccttcatgcccttcaccccctg 272 ||||||||| |||||||||||||| Sbjct: 25893 ctccttcatccccttcaccccctg 25916
>gb|AC000134.14| Homo sapiens Chromosome 11q13 BAC Clone 137c7, complete sequence Length = 203300 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 242 ccagcacctccttcatgcccttca 265 |||||| ||||||||||||||||| Sbjct: 156164 ccagcagctccttcatgcccttca 156187
>gb|AE010300.1| Leptospira interrogans serovar lai str. 56601 chromosome I, complete sequence Length = 4332241 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 311 actccgatccttggtcttcc 330 |||||||||||||||||||| Sbjct: 506414 actccgatccttggtcttcc 506433
>gb|AC021019.5|AC021019 Homo sapiens BAC clone RP11-496J3 from 6, complete sequence Length = 220216 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 194 taatcccaggcctttcggagaccg 217 ||||||||| |||||||||||||| Sbjct: 154868 taatcccagccctttcggagaccg 154845
>gb|AY087895.1| Arabidopsis thaliana clone 39407 mRNA, complete sequence Length = 830 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 249 ctccttcatgcccttcaccccctg 272 ||||||||| |||||||||||||| Sbjct: 468 ctccttcatccccttcaccccctg 445
>gb|AC125499.3| Equus caballus clone CH241-369C8, complete sequence Length = 207304 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 245 gcacctccttcatgcccttc 264 |||||||||||||||||||| Sbjct: 191034 gcacctccttcatgcccttc 191015
>dbj|AK174064.1| Ciona intestinalis cDNA, clone:ciad051p21, full insert sequence Length = 1540 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 42 ccatctcaacttgcaggcat 61 |||||||||||||||||||| Sbjct: 458 ccatctcaacttgcaggcat 477
>gb|AY891797.1| Synthetic construct Homo sapiens clone FLH116697.01L multiple endocrine neoplasia I (MEN1) mRNA, partial cds Length = 1728 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 242 ccagcacctccttcatgcccttca 265 |||||| ||||||||||||||||| Sbjct: 1591 ccagcagctccttcatgcccttca 1568
>gb|AY889308.1| Synthetic construct Homo sapiens clone FLH116701.01X multiple endocrine neoplasia I (MEN1) mRNA, complete cds Length = 1728 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 242 ccagcacctccttcatgcccttca 265 |||||| ||||||||||||||||| Sbjct: 1591 ccagcagctccttcatgcccttca 1568
>gb|AY891050.1| Synthetic construct Homo sapiens clone FLH020784.01L multiple endocrine neoplasia I (MEN1) mRNA, partial cds Length = 1833 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 242 ccagcacctccttcatgcccttca 265 |||||| ||||||||||||||||| Sbjct: 1696 ccagcagctccttcatgcccttca 1673
>gb|AY964644.2| Meleagris gallopavo cytochrome P450 CYP1A5 mRNA, complete cds Length = 1732 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 248 cctccttcatgcccttcacc 267 |||||||||||||||||||| Sbjct: 1207 cctccttcatgcccttcacc 1226
>gb|AC004810.1|AC004810 Homo sapiens chromosome Y, clone hCIT.69_H_8, complete sequence Length = 86491 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 194 taatcccaggcctttcggagaccg 217 ||||||||||||||| |||||||| Sbjct: 33870 taatcccaggcctttgggagaccg 33893
>dbj|AP001187.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-665N17, complete sequence Length = 171793 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 242 ccagcacctccttcatgcccttca 265 |||||| ||||||||||||||||| Sbjct: 10285 ccagcagctccttcatgcccttca 10308
>dbj|AP001462.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-869B15, complete sequence Length = 106886 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 242 ccagcacctccttcatgcccttca 265 |||||| ||||||||||||||||| Sbjct: 88746 ccagcagctccttcatgcccttca 88769
>gb|U93237.1|HSU93237 Human menin (MEN1) gene, complete cds Length = 9180 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 242 ccagcacctccttcatgcccttca 265 |||||| ||||||||||||||||| Sbjct: 7923 ccagcagctccttcatgcccttca 7900
>gb|U93236.1|HSU93236 Human menin (MEN1) mRNA, complete cds Length = 2772 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 242 ccagcacctccttcatgcccttca 265 |||||| ||||||||||||||||| Sbjct: 1806 ccagcagctccttcatgcccttca 1783
>gb|DP000020.1| Equus caballus target 1 genomic scaffold Length = 1907055 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 245 gcacctccttcatgcccttc 264 |||||||||||||||||||| Sbjct: 481517 gcacctccttcatgcccttc 481498
>emb|AL691461.22| Mouse DNA sequence from clone RP23-162E10 on chromosome 11, complete sequence Length = 150034 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 154 gtggctagctagattgatga 173 |||||||||||||||||||| Sbjct: 67953 gtggctagctagattgatga 67934
>emb|Y12338.1|HSURF H.sapiens mRNA 3'-region (unknown function) Length = 1837 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 242 ccagcacctccttcatgcccttca 265 |||||| ||||||||||||||||| Sbjct: 890 ccagcagctccttcatgcccttca 867
>dbj|D11043.1|GPIP451A1 Cavia porcellus mRNA for cytochrome P450 1A1, complete cds Length = 2674 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 248 cctccttcatgcccttcacc 267 |||||||||||||||||||| Sbjct: 1249 cctccttcatgcccttcacc 1268 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,159,344 Number of Sequences: 3902068 Number of extensions: 3159344 Number of successful extensions: 49923 Number of sequences better than 10.0: 61 Number of HSP's better than 10.0 without gapping: 61 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 49695 Number of HSP's gapped (non-prelim): 228 length of query: 494 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 472 effective length of database: 17,147,199,772 effective search space: 8093478292384 effective search space used: 8093478292384 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
