ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags35l05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 347 3e-92
2dbj|AK100852.1| Oryza sativa (japonica cultivar-group) cDNA clon... 347 3e-92
3gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 347 3e-92
4emb|AL831798.3|CNS08CAB Oryza sativa chromosome 12, . BAC OSJNBb... 347 3e-92
5dbj|D21814.1|LILLIM08 Lilium longiflorum LIM8 mRNA, partial cds,... 52 0.002
6gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, compl... 48 0.037
7dbj|AK070297.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.037
8emb|AL831810.4|CNS08CAN Oryza sativa chromosome 12, . BAC OSJNBa... 48 0.037
9emb|AL732531.3|CNS08C96 Oryza sativa chromosome 12, . BAC OJ1005... 48 0.037
10gb|AF079317.1| Sphingomonas aromaticivorans plasmid pNL1, comple... 46 0.15
11ref|XM_479903.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.58
12ref|XM_507109.1| PREDICTED Oryza sativa (japonica cultivar-group... 44 0.58
13emb|AJ557777.1|OSA557777 Oryza sativa (indica cultivar-group) pr... 44 0.58
14gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hilde... 44 0.58
15dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.58
16dbj|AP003886.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.58
17dbj|AK102015.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.58
18dbj|AK065217.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.58
19gb|AC149154.3| Xenopus tropicalis clone ISB-241F10, complete seq... 42 2.3
20gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete... 42 2.3
21gb|AY374326.1| Pseudomonas syringae pv. syringae hypothetical pr... 42 2.3
22emb|AL358116.7| Human DNA sequence from clone RP11-108H13 on chr... 42 2.3
23gb|AC078881.5| Homo sapiens BAC clone RP11-130F10 from 4, comple... 42 2.3
24ref|NM_103660.4| Arabidopsis thaliana amino acid permease AT1G47... 40 9.0
25gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome 40 9.0
26ref|XM_473498.1| Oryza sativa (japonica cultivar-group), predic... 40 9.0
27ref|XM_428845.1| PREDICTED: Gallus gallus similar to SH3/ankyrin... 40 9.0
28gb|AC022261.8| Homo sapiens BAC clone RP11-95A10 from 7, complet... 40 9.0
29gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complet... 40 9.0
30gb|AC116328.3| Mus musculus BAC clone RP24-131I17 from 15, compl... 40 9.0
31ref|XM_723945.1| Plasmodium yoelii yoelii str. 17XNL hypothetica... 40 9.0
32ref|XM_737947.1| Plasmodium chabaudi chabaudi hypothetical prote... 40 9.0
33gb|AY117276.1| Arabidopsis thaliana putative lysine and histidin... 40 9.0
34gb|AY065445.1| Arabidopsis thaliana putative lysine and histidin... 40 9.0
35emb|CR555306.1| Azoarcus sp. EbN1 complete genome 40 9.0
36emb|AL606687.3|OSJN00087 Oryza sativa genomic DNA, chromosome 4,... 40 9.0
37gb|AE005908.1| Caulobacter crescentus CB15 section 234 of 359 of... 40 9.0
38gb|AE005724.1| Caulobacter crescentus CB15 section 50 of 359 of ... 40 9.0
39ref|XM_697025.1| PREDICTED: Danio rerio hypothetical protein LOC... 40 9.0
40gb|AC175833.2| Pan troglodytes BAC clone CH251-679G1 from chromo... 40 9.0
41gb|AC160402.8| Mus musculus 10 BAC RP23-115L17 (Roswell Park Can... 40 9.0
42dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.0
43emb|BX814340.1|CNS0AE41 Arabidopsis thaliana Full-length cDNA Co... 40 9.0
44emb|BX816996.1|CNS0ADDW Arabidopsis thaliana Full-length cDNA Co... 40 9.0
45emb|BX816884.1|CNS0ADE5 Arabidopsis thaliana Full-length cDNA Co... 40 9.0
46emb|BX816362.1|CNS0ADAU Arabidopsis thaliana Full-length cDNA Co... 40 9.0
47gb|AC093757.3| Homo sapiens BAC clone RP11-62B7 from 4, complete... 40 9.0
48ref|NM_199804.1| Danio rerio zgc:55318 (zgc:55318), mRNA 40 9.0
49gb|AC135608.7| Mus musculus strain C57BL/6J clone rp23-408d14, c... 40 9.0
50dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 9.0
51emb|AL844480.29| Mouse DNA sequence from clone RP23-190B10 on ch... 40 9.0
52dbj|AB030586.1| Arabidopsis thaliana AATL1 gene for amino acid t... 40 9.0
53gb|BC045307.1| Danio rerio zgc:55318, mRNA (cDNA clone MGC:55318... 40 9.0
54dbj|AK060598.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 9.0
55emb|CR847999.10| Zebrafish DNA sequence from clone DKEY-216M6 in... 40 9.0
56gb|AC007519.2|F16N3 Sequence of BAC F16N3 from Arabidopsis thali... 40 9.0
57emb|CR735106.9| Zebrafish DNA sequence from clone CH211-232N15 i... 40 9.0
58emb|CT010572.8| M.truncatula DNA sequence from clone MTH2-161L21... 40 9.0
59emb|AL844874.1|CNS08CAX Oryza sativa chromosome 12, . BAC OSJNBa... 40 9.0 
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score =  347 bits (175), Expect = 3e-92
 Identities = 347/403 (86%), Gaps = 1/403 (0%)
 Strand = Plus / Plus

                                                                            
Query: 260      gggcttgaagaacttgagcttcatcccagtgttaacgatgctccagacaccacccacaga 319
                ||||||||||||||||| |||||||||| || | | |||||||||||||||||||||| |
Sbjct: 18020258 gggcttgaagaacttgaacttcatcccactgctgatgatgctccagacaccacccacaca 18020317

                                                                            
Query: 320      ggaggccaagctgaaggcggtgccgagcagggcgaggccccagttcacgtaccagctgta 379
                |   |||| |||||| || ||||| |||||  | || |||||||||| |||||| |   |
Sbjct: 18020318 gagagccaggctgaatgcagtgccaagcagcccaagcccccagttcaggtaccatcctga 18020377

                                                                            
Query: 380      gctgaacctctcaggcttcttgatacagatccacatgaagcacgggtaggcaaacgtcac 439
                |||||||||||||||||||||||| |||||||||||||||||||||||||| || || ||
Sbjct: 18020378 gctgaacctctcaggcttcttgatgcagatccacatgaagcacgggtaggcgaaggtgac 18020437

                                                                            
Query: 440      cggcagtgttaggccgcccagaaggccggcgaggctggagaggaacggcagagcgatgcc 499
                ||||| ||| || || || || ||||||||||||||||||||||||||||| |||| || 
Sbjct: 18020438 cggcaatgtcagccccccaagcaggccggcgaggctggagaggaacggcagcgcgacgct 18020497

                                                                            
Query: 500      gatgaagagcgagatgaacccgtagaagatcctgaatccagaccggacccagaccgagca 559
                |||||| ||||||| ||| |||||||| | |||||| || || |  ||||||||||||||
Sbjct: 18020498 gatgaacagcgagaggaagccgtagaacaccctgaagcctgatctcacccagaccgagca 18020557

                                                                            
Query: 560      gggccggttggtgcgaccctgtgtagaaggcctcaaagctgtcgaacaccggcatggagt 619
                 ||||||||||| || ||| ||||||   ||||||||||||||||| |||||||||||||
Sbjct: 18020558 aggccggttggtccggccc-gtgtaggcagcctcaaagctgtcgaaaaccggcatggagt 18020616

                                                           
Query: 620      atatctggaagctgctaaggcagttgaacacaacgaggaggaa 662
                |||||||||||||||| |||||||||||||| || ||||||||
Sbjct: 18020617 atatctggaagctgctcaggcagttgaacacgacaaggaggaa 18020659



 Score = 48.1 bits (24), Expect = 0.037
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                   
Query: 599     tgtcgaacaccggcatggagtatatctggaagctgc 634
               |||||||||||||||||| ||| |||||| ||||||
Sbjct: 7997574 tgtcgaacaccggcatggcgtagatctggtagctgc 7997539



 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 223     ataaatttgcaagctgaaaa 242
               ||||||||||||||||||||
Sbjct: 3362762 ataaatttgcaagctgaaaa 3362743
to top
>dbj|AK100852.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023123J03, full
            insert sequence
          Length = 2032

 Score =  347 bits (175), Expect = 3e-92
 Identities = 347/403 (86%), Gaps = 1/403 (0%)
 Strand = Plus / Minus

                                                                        
Query: 260  gggcttgaagaacttgagcttcatcccagtgttaacgatgctccagacaccacccacaga 319
            ||||||||||||||||| |||||||||| || | | |||||||||||||||||||||| |
Sbjct: 1869 gggcttgaagaacttgaacttcatcccactgctgatgatgctccagacaccacccacaca 1810

                                                                        
Query: 320  ggaggccaagctgaaggcggtgccgagcagggcgaggccccagttcacgtaccagctgta 379
            |   |||| |||||| || ||||| |||||  | || |||||||||| |||||| |   |
Sbjct: 1809 gagagccaggctgaatgcagtgccaagcagcccaagcccccagttcaggtaccatcctga 1750

                                                                        
Query: 380  gctgaacctctcaggcttcttgatacagatccacatgaagcacgggtaggcaaacgtcac 439
            |||||||||||||||||||||||| |||||||||||||||||||||||||| || || ||
Sbjct: 1749 gctgaacctctcaggcttcttgatgcagatccacatgaagcacgggtaggcgaaggtgac 1690

                                                                        
Query: 440  cggcagtgttaggccgcccagaaggccggcgaggctggagaggaacggcagagcgatgcc 499
            ||||| ||| || || || || ||||||||||||||||||||||||||||| |||| || 
Sbjct: 1689 cggcaatgtcagccccccaagcaggccggcgaggctggagaggaacggcagcgcgacgct 1630

                                                                        
Query: 500  gatgaagagcgagatgaacccgtagaagatcctgaatccagaccggacccagaccgagca 559
            |||||| ||||||| ||| |||||||| | |||||| || || |  ||||||||||||||
Sbjct: 1629 gatgaacagcgagaggaagccgtagaacaccctgaagcctgatctcacccagaccgagca 1570

                                                                        
Query: 560  gggccggttggtgcgaccctgtgtagaaggcctcaaagctgtcgaacaccggcatggagt 619
             ||||||||||| || ||| ||||||   ||||||||||||||||| |||||||||||||
Sbjct: 1569 aggccggttggtccggccc-gtgtaggcagcctcaaagctgtcgaaaaccggcatggagt 1511

                                                       
Query: 620  atatctggaagctgctaaggcagttgaacacaacgaggaggaa 662
            |||||||||||||||| |||||||||||||| || ||||||||
Sbjct: 1510 atatctggaagctgctcaggcagttgaacacgacaaggaggaa 1468
to top
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  347 bits (175), Expect = 3e-92
 Identities = 347/403 (86%), Gaps = 1/403 (0%)
 Strand = Plus / Plus

                                                                            
Query: 260      gggcttgaagaacttgagcttcatcccagtgttaacgatgctccagacaccacccacaga 319
                ||||||||||||||||| |||||||||| || | | |||||||||||||||||||||| |
Sbjct: 17946579 gggcttgaagaacttgaacttcatcccactgctgatgatgctccagacaccacccacaca 17946638

                                                                            
Query: 320      ggaggccaagctgaaggcggtgccgagcagggcgaggccccagttcacgtaccagctgta 379
                |   |||| |||||| || ||||| |||||  | || |||||||||| |||||| |   |
Sbjct: 17946639 gagagccaggctgaatgcagtgccaagcagcccaagcccccagttcaggtaccatcctga 17946698

                                                                            
Query: 380      gctgaacctctcaggcttcttgatacagatccacatgaagcacgggtaggcaaacgtcac 439
                |||||||||||||||||||||||| |||||||||||||||||||||||||| || || ||
Sbjct: 17946699 gctgaacctctcaggcttcttgatgcagatccacatgaagcacgggtaggcgaaggtgac 17946758

                                                                            
Query: 440      cggcagtgttaggccgcccagaaggccggcgaggctggagaggaacggcagagcgatgcc 499
                ||||| ||| || || || || ||||||||||||||||||||||||||||| |||| || 
Sbjct: 17946759 cggcaatgtcagccccccaagcaggccggcgaggctggagaggaacggcagcgcgacgct 17946818

                                                                            
Query: 500      gatgaagagcgagatgaacccgtagaagatcctgaatccagaccggacccagaccgagca 559
                |||||| ||||||| ||| |||||||| | |||||| || || |  ||||||||||||||
Sbjct: 17946819 gatgaacagcgagaggaagccgtagaacaccctgaagcctgatctcacccagaccgagca 17946878

                                                                            
Query: 560      gggccggttggtgcgaccctgtgtagaaggcctcaaagctgtcgaacaccggcatggagt 619
                 ||||||||||| || ||| ||||||   ||||||||||||||||| |||||||||||||
Sbjct: 17946879 aggccggttggtccggccc-gtgtaggcagcctcaaagctgtcgaaaaccggcatggagt 17946937

                                                           
Query: 620      atatctggaagctgctaaggcagttgaacacaacgaggaggaa 662
                |||||||||||||||| |||||||||||||| || ||||||||
Sbjct: 17946938 atatctggaagctgctcaggcagttgaacacgacaaggaggaa 17946980



 Score = 48.1 bits (24), Expect = 0.037
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                   
Query: 599     tgtcgaacaccggcatggagtatatctggaagctgc 634
               |||||||||||||||||| ||| |||||| ||||||
Sbjct: 7997455 tgtcgaacaccggcatggcgtagatctggtagctgc 7997420



 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 223     ataaatttgcaagctgaaaa 242
               ||||||||||||||||||||
Sbjct: 3362707 ataaatttgcaagctgaaaa 3362688
to top
>emb|AL831798.3|CNS08CAB Oryza sativa chromosome 12, . BAC OSJNBb0031E19 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 124294

 Score =  347 bits (175), Expect = 3e-92
 Identities = 347/403 (86%), Gaps = 1/403 (0%)
 Strand = Plus / Minus

                                                                         
Query: 260   gggcttgaagaacttgagcttcatcccagtgttaacgatgctccagacaccacccacaga 319
             ||||||||||||||||| |||||||||| || | | |||||||||||||||||||||| |
Sbjct: 65434 gggcttgaagaacttgaacttcatcccactgctgatgatgctccagacaccacccacaca 65375

                                                                         
Query: 320   ggaggccaagctgaaggcggtgccgagcagggcgaggccccagttcacgtaccagctgta 379
             |   |||| |||||| || ||||| |||||  | || |||||||||| |||||| |   |
Sbjct: 65374 gagagccaggctgaatgcagtgccaagcagcccaagcccccagttcaggtaccatcctga 65315

                                                                         
Query: 380   gctgaacctctcaggcttcttgatacagatccacatgaagcacgggtaggcaaacgtcac 439
             |||||||||||||||||||||||| |||||||||||||||||||||||||| || || ||
Sbjct: 65314 gctgaacctctcaggcttcttgatgcagatccacatgaagcacgggtaggcgaaggtgac 65255

                                                                         
Query: 440   cggcagtgttaggccgcccagaaggccggcgaggctggagaggaacggcagagcgatgcc 499
             ||||| ||| || || || || ||||||||||||||||||||||||||||| |||| || 
Sbjct: 65254 cggcaatgtcagccccccaagcaggccggcgaggctggagaggaacggcagcgcgacgct 65195

                                                                         
Query: 500   gatgaagagcgagatgaacccgtagaagatcctgaatccagaccggacccagaccgagca 559
             |||||| ||||||| ||| |||||||| | |||||| || || |  ||||||||||||||
Sbjct: 65194 gatgaacagcgagaggaagccgtagaacaccctgaagcctgatctcacccagaccgagca 65135

                                                                         
Query: 560   gggccggttggtgcgaccctgtgtagaaggcctcaaagctgtcgaacaccggcatggagt 619
              ||||||||||| || ||| ||||||   ||||||||||||||||| |||||||||||||
Sbjct: 65134 aggccggttggtccggccc-gtgtaggcagcctcaaagctgtcgaaaaccggcatggagt 65076

                                                        
Query: 620   atatctggaagctgctaaggcagttgaacacaacgaggaggaa 662
             |||||||||||||||| |||||||||||||| || ||||||||
Sbjct: 65075 atatctggaagctgctcaggcagttgaacacgacaaggaggaa 65033
to top
>dbj|D21814.1|LILLIM08 Lilium longiflorum LIM8 mRNA, partial cds, clone:plim8
          Length = 1614

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 55/62 (88%), Gaps = 2/62 (3%)
 Strand = Plus / Minus

                                                                        
Query: 384  aacctctcaggcttcttgat-acagatccacatgaagcacgggtaggcaaacgtcaccgg 442
            |||||||| ||||||||||| ||| |||||||| ||||| ||||| ||||| ||||||||
Sbjct: 1428 aacctctctggcttcttgatcaca-atccacataaagcaagggtaagcaaaagtcaccgg 1370

              
Query: 443  ca 444
            ||
Sbjct: 1369 ca 1368
to top
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence
          Length = 4895836

 Score = 48.1 bits (24), Expect = 0.037
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                       
Query: 332     gaaggcggtgccgagcagggcgag 355
               ||||||||||||||||||||||||
Sbjct: 3578124 gaaggcggtgccgagcagggcgag 3578147



 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 332     gaaggcggtgccgagcagggcgag 355
               |||||||||||||| |||||||||
Sbjct: 1991226 gaaggcggtgccgatcagggcgag 1991249
to top
>dbj|AK070297.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023052C04, full
            insert sequence
          Length = 1769

 Score = 48.1 bits (24), Expect = 0.037
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                
Query: 599  tgtcgaacaccggcatggagtatatctggaagctgc 634
            |||||||||||||||||| ||| |||||| ||||||
Sbjct: 1092 tgtcgaacaccggcatggcgtagatctggtagctgc 1057
to top
>emb|AL831810.4|CNS08CAN Oryza sativa chromosome 12, . BAC OSJNBa0077B14 of library OSJNBa
            from chromosome 12 of cultivar Nipponbare of ssp.
            japonica of Oryza sativa (rice), complete sequence
          Length = 153111

 Score = 48.1 bits (24), Expect = 0.037
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                
Query: 599  tgtcgaacaccggcatggagtatatctggaagctgc 634
            |||||||||||||||||| ||| |||||| ||||||
Sbjct: 2596 tgtcgaacaccggcatggcgtagatctggtagctgc 2631
to top
>emb|AL732531.3|CNS08C96 Oryza sativa chromosome 12, . BAC OJ1005_G05 of library Monsanto from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 151117

 Score = 48.1 bits (24), Expect = 0.037
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                  
Query: 599    tgtcgaacaccggcatggagtatatctggaagctgc 634
              |||||||||||||||||| ||| |||||| ||||||
Sbjct: 146104 tgtcgaacaccggcatggcgtagatctggtagctgc 146139
to top
>gb|AF079317.1| Sphingomonas aromaticivorans plasmid pNL1, complete plasmid sequence
          Length = 184457

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 452   gccgcccagaaggccggcgaggc 474
             |||||||||||||||||||||||
Sbjct: 38606 gccgcccagaaggccggcgaggc 38584
to top
>ref|XM_479903.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1743

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                              
Query: 599  tgtcgaacaccggcatggagtatatctggaagct 632
            |||||||||||||||||| ||| |||||| ||||
Sbjct: 1106 tgtcgaacaccggcatggcgtagatctggtagct 1073
to top
>ref|XM_507109.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1163_G08.25 mRNA
          Length = 1755

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                              
Query: 599  tgtcgaacaccggcatggagtatatctggaagct 632
            |||||||||||||||||| ||| |||||| ||||
Sbjct: 1180 tgtcgaacaccggcatggcgtagatctggtagct 1147
to top
>emb|AJ557777.1|OSA557777 Oryza sativa (indica cultivar-group) proplastid ht gene for histidine
            amino acid transporter
          Length = 3919

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                              
Query: 599  tgtcgaacaccggcatggagtatatctggaagct 632
            |||||||||||||||||| ||| |||||| ||||
Sbjct: 2392 tgtcgaacaccggcatggcgtagatctggtagct 2359
to top
>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome
          Length = 3570858

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 335     ggcggtgccgagcagggcgagg 356
               ||||||||||||||||||||||
Sbjct: 3146577 ggcggtgccgagcagggcgagg 3146556
to top
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                                 
Query: 599     tgtcgaacaccggcatggagtatatctggaagct 632
               |||||||||||||||||| ||| |||||| ||||
Sbjct: 1559656 tgtcgaacaccggcatggcgtagatctggtagct 1559623
to top
>dbj|AP003886.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1163_G08
          Length = 150676

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                               
Query: 599   tgtcgaacaccggcatggagtatatctggaagct 632
             |||||||||||||||||| ||| |||||| ||||
Sbjct: 87144 tgtcgaacaccggcatggcgtagatctggtagct 87111
to top
>dbj|AK102015.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033080E11, full
            insert sequence
          Length = 1754

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                              
Query: 599  tgtcgaacaccggcatggagtatatctggaagct 632
            |||||||||||||||||| ||| |||||| ||||
Sbjct: 1180 tgtcgaacaccggcatggcgtagatctggtagct 1147
to top
>dbj|AK065217.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002G10, full
            insert sequence
          Length = 1744

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                              
Query: 599  tgtcgaacaccggcatggagtatatctggaagct 632
            |||||||||||||||||| ||| |||||| ||||
Sbjct: 1107 tgtcgaacaccggcatggcgtagatctggtagct 1074
to top
>gb|AC149154.3| Xenopus tropicalis clone ISB-241F10, complete sequence
          Length = 96260

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 191   catgtaatataagaagcatat 211
             |||||||||||||||||||||
Sbjct: 53735 catgtaatataagaagcatat 53715
to top
>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome
          Length = 6093698

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 554    cgagcagggccggttggtgcg 574
              |||||||||||||||||||||
Sbjct: 268317 cgagcagggccggttggtgcg 268337
to top
>gb|AY374326.1| Pseudomonas syringae pv. syringae hypothetical protein, ArgA (argA),
            ArgE (argE), and hypothetical protein genes, complete
            cds; and unknown genes
          Length = 8080

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 554  cgagcagggccggttggtgcg 574
            |||||||||||||||||||||
Sbjct: 4229 cgagcagggccggttggtgcg 4209
to top
>emb|AL358116.7| Human DNA sequence from clone RP11-108H13 on chromosome 20 Contains
             ESTs, STSs and GSSs, complete sequence
          Length = 85821

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 585   gaaggcctcaaagctgtcgaa 605
             |||||||||||||||||||||
Sbjct: 60879 gaaggcctcaaagctgtcgaa 60859



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 585   gaaggcctcaaagctgtcgaa 605
             |||||||||||||||||||||
Sbjct: 57475 gaaggcctcaaagctgtcgaa 57455
to top
>gb|AC078881.5| Homo sapiens BAC clone RP11-130F10 from 4, complete sequence
          Length = 171068

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 226   aatttgcaagctgaaaatagc 246
             |||||||||||||||||||||
Sbjct: 75896 aatttgcaagctgaaaatagc 75916
to top
>ref|NM_103660.4| Arabidopsis thaliana amino acid permease AT1G47670 mRNA, complete cds
          Length = 1774

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 261  ggcttgaagaacttgagctt 280
            ||||||||||||||||||||
Sbjct: 1597 ggcttgaagaacttgagctt 1578



 Score = 40.1 bits (20), Expect = 9.0
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                        
Query: 592  tcaaagctgtcgaacaccggcatggagtatatctggaagctgct 635
            ||||||||||| ||  | ||||||||||||||||| || |||||
Sbjct: 1267 tcaaagctgtcaaaggcaggcatggagtatatctgaaaactgct 1224
to top
>gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome
          Length = 2364842

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 498    ccgatgaagagcgagatgaacccg 521
              |||||||||||||||| |||||||
Sbjct: 545682 ccgatgaagagcgagaggaacccg 545705
to top
>ref|XM_473498.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1539

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                
Query: 410  ccacatgaagcacgggtaggcaaacgtcaccggcag 445
            |||||||||||||||||| || | ||| ||||||||
Sbjct: 1374 ccacatgaagcacgggtacgccagcgtgaccggcag 1339
to top
>ref|XM_428845.1| PREDICTED: Gallus gallus similar to SH3/ankyrin domain gene 3;
            proline rich synapse associated protein 2; Shank
            postsynaptic density protein 3a (LOC431294), partial mRNA
          Length = 7720

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 323  ggccaagctgaaggcggtgc 342
            ||||||||||||||||||||
Sbjct: 5326 ggccaagctgaaggcggtgc 5345
to top
>gb|AC022261.8| Homo sapiens BAC clone RP11-95A10 from 7, complete sequence
          Length = 146688

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 224   taaatttgcaagctgaaaat 243
             ||||||||||||||||||||
Sbjct: 21641 taaatttgcaagctgaaaat 21622
to top
>gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complete sequence
          Length = 2580084

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 452     gccgcccagaaggccggcga 471
               ||||||||||||||||||||
Sbjct: 2201823 gccgcccagaaggccggcga 2201842



 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 452     gccgcccagaaggccggcga 471
               ||||||||||||||||||||
Sbjct: 1423789 gccgcccagaaggccggcga 1423808
to top
>gb|AC116328.3| Mus musculus BAC clone RP24-131I17 from 15, complete sequence
          Length = 149291

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 205   agcatatacctatatatcataaatttgc 232
             ||||||| | ||||||||||||||||||
Sbjct: 93800 agcatatgcatatatatcataaatttgc 93773
to top
>ref|XM_723945.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY01306)
            partial mRNA
          Length = 4781

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 209  tatacctatatatcataaat 228
            ||||||||||||||||||||
Sbjct: 1722 tatacctatatatcataaat 1741
to top
>ref|XM_737947.1| Plasmodium chabaudi chabaudi hypothetical protein (PC000425.03.0)
           partial mRNA
          Length = 3108

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 209 tatacctatatatcataaat 228
           ||||||||||||||||||||
Sbjct: 363 tatacctatatatcataaat 382
to top
>gb|AY117276.1| Arabidopsis thaliana putative lysine and histidine specific
            transporter protein (At1g47670) mRNA, complete cds
          Length = 1591

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 261  ggcttgaagaacttgagctt 280
            ||||||||||||||||||||
Sbjct: 1550 ggcttgaagaacttgagctt 1531



 Score = 40.1 bits (20), Expect = 9.0
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                        
Query: 592  tcaaagctgtcgaacaccggcatggagtatatctggaagctgct 635
            ||||||||||| ||  | ||||||||||||||||| || |||||
Sbjct: 1220 tcaaagctgtcaaaggcaggcatggagtatatctgaaaactgct 1177
to top
>gb|AY065445.1| Arabidopsis thaliana putative lysine and histidine specific
            transporter protein (At1g47670) mRNA, complete cds
          Length = 1777

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 261  ggcttgaagaacttgagctt 280
            ||||||||||||||||||||
Sbjct: 1596 ggcttgaagaacttgagctt 1577



 Score = 40.1 bits (20), Expect = 9.0
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                        
Query: 592  tcaaagctgtcgaacaccggcatggagtatatctggaagctgct 635
            ||||||||||| ||  | ||||||||||||||||| || |||||
Sbjct: 1266 tcaaagctgtcaaaggcaggcatggagtatatctgaaaactgct 1223
to top
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 329     gctgaaggcggtgccgagcagggc 352
               |||||||||| |||||||||||||
Sbjct: 1883980 gctgaaggcgctgccgagcagggc 1883957
to top
>emb|AL606687.3|OSJN00087 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084K11,
              complete sequence
          Length = 147806

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                  
Query: 410    ccacatgaagcacgggtaggcaaacgtcaccggcag 445
              |||||||||||||||||| || | ||| ||||||||
Sbjct: 118545 ccacatgaagcacgggtacgccagcgtgaccggcag 118580
to top
>gb|AE005908.1| Caulobacter crescentus CB15 section 234 of 359 of the complete genome
          Length = 11320

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 455  gcccagaaggccggcgaggc 474
            ||||||||||||||||||||
Sbjct: 2092 gcccagaaggccggcgaggc 2111
to top
>gb|AE005724.1| Caulobacter crescentus CB15 section 50 of 359 of the complete
           genome
          Length = 12114

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 450 aggccgcccagaaggccggc 469
           ||||||||||||||||||||
Sbjct: 695 aggccgcccagaaggccggc 714
to top
>ref|XM_697025.1| PREDICTED: Danio rerio hypothetical protein LOC554747 (LOC554747),
            mRNA
          Length = 2111

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 622  atctggaagctgctaaggca 641
            ||||||||||||||||||||
Sbjct: 1625 atctggaagctgctaaggca 1644
to top
>gb|AC175833.2| Pan troglodytes BAC clone CH251-679G1 from chromosome 7, complete
              sequence
          Length = 191935

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 224    taaatttgcaagctgaaaat 243
              ||||||||||||||||||||
Sbjct: 104692 taaatttgcaagctgaaaat 104711
to top
>gb|AC160402.8| Mus musculus 10 BAC RP23-115L17 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 224566

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 631   ctgctaaggcagttgaacac 650
             ||||||||||||||||||||
Sbjct: 18138 ctgctaaggcagttgaacac 18119
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                    
Query: 410      ccacatgaagcacgggtaggcaaacgtcaccggcag 445
                |||||||||||||||||| || | ||| ||||||||
Sbjct: 28111320 ccacatgaagcacgggtacgccagcgtgaccggcag 28111355
to top
>emb|BX814340.1|CNS0AE41 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB69ZB05 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1714

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 261  ggcttgaagaacttgagctt 280
            ||||||||||||||||||||
Sbjct: 1537 ggcttgaagaacttgagctt 1518
to top
>emb|BX816996.1|CNS0ADDW Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH7ZG05 of Hormone Treated Callus of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1702

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 261  ggcttgaagaacttgagctt 280
            ||||||||||||||||||||
Sbjct: 1598 ggcttgaagaacttgagctt 1579



 Score = 40.1 bits (20), Expect = 9.0
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                        
Query: 592  tcaaagctgtcgaacaccggcatggagtatatctggaagctgct 635
            ||||||||||| ||  | ||||||||||||||||| || |||||
Sbjct: 1262 tcaaagctgtcaaaggcaggcatggagtatatctgaaaactgct 1219
to top
>emb|BX816884.1|CNS0ADE5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH74ZE11 of Hormone Treated Callus of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1300

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 261  ggcttgaagaacttgagctt 280
            ||||||||||||||||||||
Sbjct: 1252 ggcttgaagaacttgagctt 1233



 Score = 40.1 bits (20), Expect = 9.0
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                       
Query: 592 tcaaagctgtcgaacaccggcatggagtatatctggaagctgct 635
           ||||||||||| ||  | ||||||||||||||||| || |||||
Sbjct: 922 tcaaagctgtcaaaggcaggcatggagtatatctgaaaactgct 879
to top
>emb|BX816362.1|CNS0ADAU Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH43ZF12 of Hormone Treated Callus of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1686

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 261  ggcttgaagaacttgagctt 280
            ||||||||||||||||||||
Sbjct: 1575 ggcttgaagaacttgagctt 1556



 Score = 40.1 bits (20), Expect = 9.0
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                        
Query: 592  tcaaagctgtcgaacaccggcatggagtatatctggaagctgct 635
            ||||||||||| ||  | ||||||||||||||||| || |||||
Sbjct: 1245 tcaaagctgtcaaaggcaggcatggagtatatctgaaaactgct 1202
to top
>gb|AC093757.3| Homo sapiens BAC clone RP11-62B7 from 4, complete sequence
          Length = 38412

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 275  gagcttcatcccagtgttaa 294
            ||||||||||||||||||||
Sbjct: 9221 gagcttcatcccagtgttaa 9240
to top
>ref|NM_199804.1| Danio rerio zgc:55318 (zgc:55318), mRNA
          Length = 4221

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 622  atctggaagctgctaaggca 641
            ||||||||||||||||||||
Sbjct: 3716 atctggaagctgctaaggca 3735
to top
>gb|AC135608.7| Mus musculus strain C57BL/6J clone rp23-408d14, complete sequence
          Length = 213801

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 631   ctgctaaggcagttgaacac 650
             ||||||||||||||||||||
Sbjct: 84772 ctgctaaggcagttgaacac 84753
to top
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 335     ggcggtgccgagcagggcga 354
               ||||||||||||||||||||
Sbjct: 4843426 ggcggtgccgagcagggcga 4843407
to top
>emb|AL844480.29| Mouse DNA sequence from clone RP23-190B10 on chromosome 4, complete
             sequence
          Length = 175199

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 533   gaatccagaccggacccaga 552
             ||||||||||||||||||||
Sbjct: 38103 gaatccagaccggacccaga 38122
to top
>dbj|AB030586.1| Arabidopsis thaliana AATL1 gene for amino acid transporter-like
            protein 1, complete cds
          Length = 4557

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 261  ggcttgaagaacttgagctt 280
            ||||||||||||||||||||
Sbjct: 4235 ggcttgaagaacttgagctt 4216



 Score = 40.1 bits (20), Expect = 9.0
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                        
Query: 592  tcaaagctgtcgaacaccggcatggagtatatctggaagctgct 635
            ||||||||||| ||  | ||||||||||||||||| || |||||
Sbjct: 3905 tcaaagctgtcaaaggcaggcatggagtatatctgaaaactgct 3862
to top
>gb|BC045307.1| Danio rerio zgc:55318, mRNA (cDNA clone MGC:55318 IMAGE:2600688),
            complete cds
          Length = 4221

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 622  atctggaagctgctaaggca 641
            ||||||||||||||||||||
Sbjct: 3716 atctggaagctgctaaggca 3735
to top
>dbj|AK060598.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-024-G11, full
            insert sequence
          Length = 1765

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                
Query: 410  ccacatgaagcacgggtaggcaaacgtcaccggcag 445
            |||||||||||||||||| || | ||| ||||||||
Sbjct: 1460 ccacatgaagcacgggtacgccagcgtgaccggcag 1425
to top
>emb|CR847999.10| Zebrafish DNA sequence from clone DKEY-216M6 in linkage group 11,
              complete sequence
          Length = 192191

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 208    atatacctatatatcataaatttgcaag 235
              ||||||||||| ||||||||| ||||||
Sbjct: 106748 atatacctataaatcataaatgtgcaag 106721
to top
>gb|AC007519.2|F16N3 Sequence of BAC F16N3 from Arabidopsis thaliana chromosome 1, complete
             sequence
          Length = 171769

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 261   ggcttgaagaacttgagctt 280
             ||||||||||||||||||||
Sbjct: 29406 ggcttgaagaacttgagctt 29387



 Score = 40.1 bits (20), Expect = 9.0
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                         
Query: 592   tcaaagctgtcgaacaccggcatggagtatatctggaagctgct 635
             ||||||||||| ||  | ||||||||||||||||| || |||||
Sbjct: 29076 tcaaagctgtcaaaggcaggcatggagtatatctgaaaactgct 29033
to top
>emb|CR735106.9| Zebrafish DNA sequence from clone CH211-232N15 in linkage group 11,
             complete sequence
          Length = 167829

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 208   atatacctatatatcataaatttgcaag 235
             ||||||||||| ||||||||| ||||||
Sbjct: 55336 atatacctataaatcataaatgtgcaag 55309
to top
>emb|CT010572.8| M.truncatula DNA sequence from clone MTH2-161L21 on chromosome 3,
              complete sequence
          Length = 121331

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 20     atagtagttatataaattgt 39
              ||||||||||||||||||||
Sbjct: 101245 atagtagttatataaattgt 101226
to top
>emb|AL844874.1|CNS08CAX Oryza sativa chromosome 12, . BAC OSJNBa0041K23 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 137936

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 223   ataaatttgcaagctgaaaa 242
             ||||||||||||||||||||
Sbjct: 41815 ataaatttgcaagctgaaaa 41796


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,314,696
Number of Sequences: 3902068
Number of extensions: 5314696
Number of successful extensions: 101357
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 100648
Number of HSP's gapped (non-prelim): 706
length of query: 662
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 639
effective length of database: 17,143,297,704
effective search space: 10954567232856
effective search space used: 10954567232856
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top