| Clone Name | rbags35l04 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT009220.1| Triticum aestivum clone wle1n.pk0074.a9:fis, full insert mRNA sequence Length = 788 Score = 1001 bits (505), Expect = 0.0 Identities = 626/663 (94%), Gaps = 5/663 (0%) Strand = Plus / Minus Query: 4 aggtgagatt-ttcccggtcctagaatgtatcctgctatcaggttggttagtagcagtgc 62 |||||||||| |||| ||||||||| ||||||||||||||||||||||||||||| ||| Sbjct: 667 aggtgagattattccaagtcctagaacgtatcctgctatcaggttggttagtagcactgc 608 Query: 63 cacaatcttgtcagtcgaactgtaagatcaacctcgccaacagtccagcttcagtttgta 122 |||||| ||||||||| | ||||||||||||||||||||||||||||||| ||||||||| Sbjct: 607 cacaattttgtcagtccagctgtaagatcaacctcgccaacagtccagctccagtttgta 548 Query: 123 agtagtaacaacgaacttatgcacatggaatccttggtagggcatcaatatttaccatag 182 ||| ||||| ||||| || | |||| ||||||||||||||| |||||||||||||| Sbjct: 547 agttgtaacgttgaactcgtggagatgggatccttggtagggcaacaatatttaccataa 488 Query: 183 tgggttaaatgtgggata-gaaaaatgagaaaggggcctaaactggttcgcatgctgaag 241 |||||||||||||||||| ||| | |||| |||||||||||||||||||||||| ||| Sbjct: 487 tgggttaaatgtgggataagaatattgaggaaggggcctaaactggttcgcatg---aag 431 Query: 242 ttcttatgaagcgaatggggatgattcttcaattgatttctggtctgtgggcttcaactc 301 |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 430 ttcttatgaagcaaatggggatgattcttcaattgatttctggtctgtgggctttaactc 371 Query: 302 ccaattacgaaggctgccagttgccgagttggactttgaaatgtacaaaaccttgttgtg 361 ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| Sbjct: 370 ccaattacgaaggctgccagttgccgaatcggactttgaaatgtacaaaaccttgttgtg 311 Query: 362 gaacctgtgaagtgttttccggtgaccgacacttatatatgtaatccctgcagcttcaat 421 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 310 gaacctgtgaagtgtcttccggtgaccgacacttatatatgtaatccctgcagcttcaat 251 Query: 422 ctgactgtatagatgaacctcatttgtatcatctagtgcacttgtggactcgtccagtag 481 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 250 ctgactgtatagatgaacctcatttgtatcatctagtgcacttgtggactcgtccagtag 191 Query: 482 gaccagagttggttttgcgagtaacaaacgagcaaatgcaagacgctgttgctcccctag 541 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 190 gaccagagttggttttgcgagtaacaaccgagcaaatgcaagacgctgttgctcccctag 131 Query: 542 cgaaagaacactggcccaatcatggacagaatccatgccattgaaacgtggcagtatgta 601 ||||||||||| |||||||||||||||||||||||||||||||||||||| | |||||| Sbjct: 130 ggaaagaacactagcccaatcatggacagaatccatgccattgaaacgtggtaatatgta 71 Query: 602 gcccagcctaacaacctcaagtactctgatcagttcatcagttgagggcatctcaggctt 661 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 70 gcccagcctaacaacctcaagtactctgatcagttcatcagttgagggcatctcaggctt 11 Query: 662 ggc 664 ||| Sbjct: 10 ggc 8
>dbj|AK064992.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001D15, full insert sequence Length = 2840 Score = 394 bits (199), Expect = e-106 Identities = 460/546 (84%), Gaps = 7/546 (1%) Strand = Plus / Minus Query: 237 tgaagttcttatgaagcgaatggggatgattcttcaattgatttctggtctgtgggcttc 296 |||| |||||||||||| |||| |||||| |||||||| || |||| ||||||||||| Sbjct: 2418 tgaaattcttatgaagcaaatgaggatgactcttcaatcgacatctgttctgtgggcttt 2359 Query: 297 aactcccaattacgaaggctgccagttgccgagttggactttgaaatgtacaaaaccttg 356 | | ||||||||| || ||| | | || | ||| |||||||||||||| |||||| Sbjct: 2358 aggtaccaattacgtgggttgctatccgttgaatcggaatttgaaatgtacaagaccttg 2299 Query: 357 ttgtggaacctgtgaagtgttttccggtgaccgacacttatatatgtaatccctgcagct 416 ||||||||| |||| ||||||||||||||||| | ||||| || ||||||||||||||| Sbjct: 2298 ttgtggaacttgtgcagtgttttccggtgaccaatgcttatgtaagtaatccctgcagct 2239 Query: 417 tcaatctgactgtatagatgaacctcatttgtatcatctagtgcacttgtggactcgtcc 476 ||||||||||||||||||||| |||||| ||||||||||||||||||||||||| || Sbjct: 2238 tcaatctgactgtatagatgacgctcattcatatcatctagtgcacttgtggactcatca 2179 Query: 477 agtaggaccagagttggttttgcgagtaacaaacgagcaaatgcaagacgctgttgctcc 536 || ||||| | |||||||||||| |||||||| ||||||||||||||||||||||||||| Sbjct: 2178 aggaggactaaagttggttttgcaagtaacaaccgagcaaatgcaagacgctgttgctcc 2119 Query: 537 cctagcgaaagaacactggcccaatcatggacagaatccatgccattgaaacgtggcagt 596 || || || ||| | |||||||||||||| | |||||||| ||||||||||| |||| | Sbjct: 2118 cccagagagagagcgctggcccaatcatgcatagaatccaaaccattgaaacgaggcaat 2059 Query: 597 atgtagcccagcctaacaacctcaagtactctgatcagttcatcagttgagggcatctca 656 || ||||| | | ||||| |||||||||||||||||||||||||||||| |||||||||| Sbjct: 2058 atatagcctaacttaacagcctcaagtactctgatcagttcatcagttgtgggcatctca 1999 Query: 657 ggcttggcaccaactccatctgacatggaggcttcagatagaaaggaaagaggagctttg 716 | ||||| ||||||||||||||| ||||| |||| ||||| |||||| || | Sbjct: 1998 gacttggaaccaactccatctgatgtggagacttc------aaaggtaagagggtctgta 1945 Query: 717 ctttgagcatcattagttggtgactgatgtatattttgcagtccatgtaggatagagcaa 776 ||||||| ||||||| ||| ||| ||| | || || |||||||||||||||||||||| Sbjct: 1944 ctttgaggatcattatttgatgaatgacaaacatctt-cagtccatgtaggatagagcaa 1886 Query: 777 ttgctg 782 |||||| Sbjct: 1885 ttgctg 1880
>dbj|AK063157.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-043-C09, full insert sequence Length = 931 Score = 389 bits (196), Expect = e-104 Identities = 391/456 (85%) Strand = Plus / Minus Query: 237 tgaagttcttatgaagcgaatggggatgattcttcaattgatttctggtctgtgggcttc 296 |||| |||||||||||| |||| |||||| |||||||| || |||| ||||||||||| Sbjct: 509 tgaaattcttatgaagcaaatgaggatgactcttcaatcgacatctgttctgtgggcttt 450 Query: 297 aactcccaattacgaaggctgccagttgccgagttggactttgaaatgtacaaaaccttg 356 | | ||||||||| || ||| | | || | ||| |||||||||||||| |||||| Sbjct: 449 aggtaccaattacgtgggttgctatccgttgaatcggaatttgaaatgtacaagaccttg 390 Query: 357 ttgtggaacctgtgaagtgttttccggtgaccgacacttatatatgtaatccctgcagct 416 ||||||||| |||| ||||||||||||||||| | ||||| || |||||||||||||| Sbjct: 389 ttgtggaacttgtgcagtgttttccggtgaccaatgcttatgtaagtaatccctgcagcc 330 Query: 417 tcaatctgactgtatagatgaacctcatttgtatcatctagtgcacttgtggactcgtcc 476 ||||||||||||||||||||| |||||| ||||||||||||||||||||||||| || Sbjct: 329 tcaatctgactgtatagatgacgctcattcatatcatctagtgcacttgtggactcatca 270 Query: 477 agtaggaccagagttggttttgcgagtaacaaacgagcaaatgcaagacgctgttgctcc 536 || ||||| | |||||||||||| |||||||| ||||||||||||||||||||||||||| Sbjct: 269 aggaggactaaagttggttttgcaagtaacaaccgagcaaatgcaagacgctgttgctcc 210 Query: 537 cctagcgaaagaacactggcccaatcatggacagaatccatgccattgaaacgtggcagt 596 || || || ||||| |||||||||||||| | |||||||| ||||||||||| |||| | Sbjct: 209 cccagagagagaacgctggcccaatcatgcatagaatccaaaccattgaaacgaggcaat 150 Query: 597 atgtagcccagcctaacaacctcaagtactctgatcagttcatcagttgagggcatctca 656 || ||||| | | ||||| |||||||||||||||||||||||||||||| |||||||||| Sbjct: 149 atatagcctaacttaacagcctcaagtactctgatcagttcatcagttgtgggcatctca 90 Query: 657 ggcttggcaccaactccatctgacatggaggcttca 692 | ||||| ||||||||||||||| ||||| ||||| Sbjct: 89 gacttggaaccaactccatctgatgtggagacttca 54
>ref|NM_188480.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1545 Score = 383 bits (193), Expect = e-103 Identities = 304/341 (89%) Strand = Plus / Minus Query: 336 tttgaaatgtacaaaaccttgttgtggaacctgtgaagtgttttccggtgaccgacactt 395 |||||||||||||| ||||||||||||||| |||| ||||||||||||||||| | ||| Sbjct: 1454 tttgaaatgtacaagaccttgttgtggaacttgtgcagtgttttccggtgaccaatgctt 1395 Query: 396 atatatgtaatccctgcagcttcaatctgactgtatagatgaacctcatttgtatcatct 455 || || |||||||||||||||||||||||||||||||||||| |||||| |||||||| Sbjct: 1394 atgtaagtaatccctgcagcttcaatctgactgtatagatgacgctcattcatatcatct 1335 Query: 456 agtgcacttgtggactcgtccagtaggaccagagttggttttgcgagtaacaaacgagca 515 ||||||||||||||||| || || ||||| | |||||||||||| |||||||| |||||| Sbjct: 1334 agtgcacttgtggactcatcaaggaggactaaagttggttttgcaagtaacaaccgagca 1275 Query: 516 aatgcaagacgctgttgctcccctagcgaaagaacactggcccaatcatggacagaatcc 575 ||||||||||||||||||||||| || || ||||| |||||||||||||| | ||||||| Sbjct: 1274 aatgcaagacgctgttgctcccccagagagagaacgctggcccaatcatgcatagaatcc 1215 Query: 576 atgccattgaaacgtggcagtatgtagcccagcctaacaacctcaagtactctgatcagt 635 | ||||||||||| |||| ||| ||||| | | ||||| |||||||||||||||||||| Sbjct: 1214 aaaccattgaaacgaggcaatatatagcctaacttaacagcctcaagtactctgatcagt 1155 Query: 636 tcatcagttgagggcatctcaggcttggcaccaactccatc 676 |||||||||| ||||||||||| ||||| |||||||||||| Sbjct: 1154 tcatcagttgtgggcatctcagacttggaaccaactccatc 1114
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 268 bits (135), Expect = 3e-68 Identities = 225/255 (88%) Strand = Plus / Plus Query: 438 acctcatttgtatcatctagtgcacttgtggactcgtccagtaggaccagagttggtttt 497 |||||||| ||||||||||||||||||||||||| || || ||||| | |||||||||| Sbjct: 6500608 acctcattcatatcatctagtgcacttgtggactcatcaaggaggactaaagttggtttt 6500667 Query: 498 gcgagtaacaaacgagcaaatgcaagacgctgttgctcccctagcgaaagaacactggcc 557 || |||||||| ||||||||||||||||||||||||||||| || || ||||| |||||| Sbjct: 6500668 gcaagtaacaaccgagcaaatgcaagacgctgttgctcccccagagagagaacgctggcc 6500727 Query: 558 caatcatggacagaatccatgccattgaaacgtggcagtatgtagcccagcctaacaacc 617 |||||||| | |||||||| ||||||||||| |||| ||| ||||| | | ||||| || Sbjct: 6500728 caatcatgcatagaatccaaaccattgaaacgaggcaatatatagcctaacttaacagcc 6500787 Query: 618 tcaagtactctgatcagttcatcagttgagggcatctcaggcttggcaccaactccatct 677 |||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||| Sbjct: 6500788 tcaagtactctgatcagttcatcagttgtgggcatctcagacttggaaccaactccatct 6500847 Query: 678 gacatggaggcttca 692 || ||||| ||||| Sbjct: 6500848 gatgtggagacttca 6500862 Score = 145 bits (73), Expect = 3e-31 Identities = 169/201 (84%) Strand = Plus / Plus Query: 237 tgaagttcttatgaagcgaatggggatgattcttcaattgatttctggtctgtgggcttc 296 |||| |||||||||||| |||| |||||| |||||||| || |||| ||||||||||| Sbjct: 6500131 tgaaattcttatgaagcaaatgaggatgactcttcaatcgacatctgttctgtgggcttt 6500190 Query: 297 aactcccaattacgaaggctgccagttgccgagttggactttgaaatgtacaaaaccttg 356 | | ||||||||| || ||| | | || | ||| |||||||||||||| |||||| Sbjct: 6500191 aggtaccaattacgtgggttgctatccgttgaatcggaatttgaaatgtacaagaccttg 6500250 Query: 357 ttgtggaacctgtgaagtgttttccggtgaccgacacttatatatgtaatccctgcagct 416 ||||||||| |||| ||||||||||||||||| | ||||| || ||||||||||||||| Sbjct: 6500251 ttgtggaacttgtgcagtgttttccggtgaccaatgcttatgtaagtaatccctgcagct 6500310 Query: 417 tcaatctgactgtatagatga 437 ||||||||||||||||||||| Sbjct: 6500311 tcaatctgactgtatagatga 6500331 Score = 56.0 bits (28), Expect = 2e-04 Identities = 28/28 (100%) Strand = Plus / Plus Query: 755 cagtccatgtaggatagagcaattgctg 782 |||||||||||||||||||||||||||| Sbjct: 6501536 cagtccatgtaggatagagcaattgctg 6501563
>dbj|AP002745.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0489G09 Length = 148707 Score = 268 bits (135), Expect = 3e-68 Identities = 225/255 (88%) Strand = Plus / Plus Query: 438 acctcatttgtatcatctagtgcacttgtggactcgtccagtaggaccagagttggtttt 497 |||||||| ||||||||||||||||||||||||| || || ||||| | |||||||||| Sbjct: 68088 acctcattcatatcatctagtgcacttgtggactcatcaaggaggactaaagttggtttt 68147 Query: 498 gcgagtaacaaacgagcaaatgcaagacgctgttgctcccctagcgaaagaacactggcc 557 || |||||||| ||||||||||||||||||||||||||||| || || ||||| |||||| Sbjct: 68148 gcaagtaacaaccgagcaaatgcaagacgctgttgctcccccagagagagaacgctggcc 68207 Query: 558 caatcatggacagaatccatgccattgaaacgtggcagtatgtagcccagcctaacaacc 617 |||||||| | |||||||| ||||||||||| |||| ||| ||||| | | ||||| || Sbjct: 68208 caatcatgcatagaatccaaaccattgaaacgaggcaatatatagcctaacttaacagcc 68267 Query: 618 tcaagtactctgatcagttcatcagttgagggcatctcaggcttggcaccaactccatct 677 |||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||| Sbjct: 68268 tcaagtactctgatcagttcatcagttgtgggcatctcagacttggaaccaactccatct 68327 Query: 678 gacatggaggcttca 692 || ||||| ||||| Sbjct: 68328 gatgtggagacttca 68342 Score = 145 bits (73), Expect = 3e-31 Identities = 169/201 (84%) Strand = Plus / Plus Query: 237 tgaagttcttatgaagcgaatggggatgattcttcaattgatttctggtctgtgggcttc 296 |||| |||||||||||| |||| |||||| |||||||| || |||| ||||||||||| Sbjct: 67611 tgaaattcttatgaagcaaatgaggatgactcttcaatcgacatctgttctgtgggcttt 67670 Query: 297 aactcccaattacgaaggctgccagttgccgagttggactttgaaatgtacaaaaccttg 356 | | ||||||||| || ||| | | || | ||| |||||||||||||| |||||| Sbjct: 67671 aggtaccaattacgtgggttgctatccgttgaatcggaatttgaaatgtacaagaccttg 67730 Query: 357 ttgtggaacctgtgaagtgttttccggtgaccgacacttatatatgtaatccctgcagct 416 ||||||||| |||| ||||||||||||||||| | ||||| || ||||||||||||||| Sbjct: 67731 ttgtggaacttgtgcagtgttttccggtgaccaatgcttatgtaagtaatccctgcagct 67790 Query: 417 tcaatctgactgtatagatga 437 ||||||||||||||||||||| Sbjct: 67791 tcaatctgactgtatagatga 67811 Score = 56.0 bits (28), Expect = 2e-04 Identities = 28/28 (100%) Strand = Plus / Plus Query: 755 cagtccatgtaggatagagcaattgctg 782 |||||||||||||||||||||||||||| Sbjct: 69016 cagtccatgtaggatagagcaattgctg 69043
>dbj|AP002861.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0665D10 Length = 134967 Score = 268 bits (135), Expect = 3e-68 Identities = 225/255 (88%) Strand = Plus / Plus Query: 438 acctcatttgtatcatctagtgcacttgtggactcgtccagtaggaccagagttggtttt 497 |||||||| ||||||||||||||||||||||||| || || ||||| | |||||||||| Sbjct: 123003 acctcattcatatcatctagtgcacttgtggactcatcaaggaggactaaagttggtttt 123062 Query: 498 gcgagtaacaaacgagcaaatgcaagacgctgttgctcccctagcgaaagaacactggcc 557 || |||||||| ||||||||||||||||||||||||||||| || || ||||| |||||| Sbjct: 123063 gcaagtaacaaccgagcaaatgcaagacgctgttgctcccccagagagagaacgctggcc 123122 Query: 558 caatcatggacagaatccatgccattgaaacgtggcagtatgtagcccagcctaacaacc 617 |||||||| | |||||||| ||||||||||| |||| ||| ||||| | | ||||| || Sbjct: 123123 caatcatgcatagaatccaaaccattgaaacgaggcaatatatagcctaacttaacagcc 123182 Query: 618 tcaagtactctgatcagttcatcagttgagggcatctcaggcttggcaccaactccatct 677 |||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||| Sbjct: 123183 tcaagtactctgatcagttcatcagttgtgggcatctcagacttggaaccaactccatct 123242 Query: 678 gacatggaggcttca 692 || ||||| ||||| Sbjct: 123243 gatgtggagacttca 123257 Score = 145 bits (73), Expect = 3e-31 Identities = 169/201 (84%) Strand = Plus / Plus Query: 237 tgaagttcttatgaagcgaatggggatgattcttcaattgatttctggtctgtgggcttc 296 |||| |||||||||||| |||| |||||| |||||||| || |||| ||||||||||| Sbjct: 122526 tgaaattcttatgaagcaaatgaggatgactcttcaatcgacatctgttctgtgggcttt 122585 Query: 297 aactcccaattacgaaggctgccagttgccgagttggactttgaaatgtacaaaaccttg 356 | | ||||||||| || ||| | | || | ||| |||||||||||||| |||||| Sbjct: 122586 aggtaccaattacgtgggttgctatccgttgaatcggaatttgaaatgtacaagaccttg 122645 Query: 357 ttgtggaacctgtgaagtgttttccggtgaccgacacttatatatgtaatccctgcagct 416 ||||||||| |||| ||||||||||||||||| | ||||| || ||||||||||||||| Sbjct: 122646 ttgtggaacttgtgcagtgttttccggtgaccaatgcttatgtaagtaatccctgcagct 122705 Query: 417 tcaatctgactgtatagatga 437 ||||||||||||||||||||| Sbjct: 122706 tcaatctgactgtatagatga 122726 Score = 56.0 bits (28), Expect = 2e-04 Identities = 28/28 (100%) Strand = Plus / Plus Query: 755 cagtccatgtaggatagagcaattgctg 782 |||||||||||||||||||||||||||| Sbjct: 123931 cagtccatgtaggatagagcaattgctg 123958
>dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete genome Length = 2696255 Score = 44.1 bits (22), Expect = 0.69 Identities = 22/22 (100%) Strand = Plus / Plus Query: 378 ttccggtgaccgacacttatat 399 |||||||||||||||||||||| Sbjct: 1075526 ttccggtgaccgacacttatat 1075547
>gb|AC104536.2| Homo sapiens chromosome 19 clone LLNLR-308D7, complete sequence Length = 38667 Score = 44.1 bits (22), Expect = 0.69 Identities = 22/22 (100%) Strand = Plus / Plus Query: 261 gatgattcttcaattgatttct 282 |||||||||||||||||||||| Sbjct: 4600 gatgattcttcaattgatttct 4621
>gb|AC008746.10| Homo sapiens chromosome 19 clone CTD-2587H19, complete sequence Length = 200070 Score = 44.1 bits (22), Expect = 0.69 Identities = 22/22 (100%) Strand = Plus / Plus Query: 261 gatgattcttcaattgatttct 282 |||||||||||||||||||||| Sbjct: 181097 gatgattcttcaattgatttct 181118
>gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome Length = 2695903 Score = 44.1 bits (22), Expect = 0.69 Identities = 22/22 (100%) Strand = Plus / Minus Query: 378 ttccggtgaccgacacttatat 399 |||||||||||||||||||||| Sbjct: 545353 ttccggtgaccgacacttatat 545332
>emb|Z46676.2|CEC08B11 Caenorhabditis elegans Cosmid C08B11, complete sequence Length = 26322 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 691 cagatagaaaggaaagaggag 711 ||||||||||||||||||||| Sbjct: 12084 cagatagaaaggaaagaggag 12104
>gb|AC111007.4| Mus musculus BAC clone RP23-226I10 from 3, complete sequence Length = 176259 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 706 gaggagctttgctttgagcat 726 ||||||||||||||||||||| Sbjct: 98467 gaggagctttgctttgagcat 98487
>gb|AC157917.4| Mus musculus chromosome 3, clone RP23-120L6, complete sequence Length = 206959 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 706 gaggagctttgctttgagcat 726 ||||||||||||||||||||| Sbjct: 55054 gaggagctttgctttgagcat 55074
>gb|AC090333.5| Homo sapiens chromosome 18, clone RP11-843P6, complete sequence Length = 165344 Score = 42.1 bits (21), Expect = 2.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 194 tgggatagaaaaatgagaaaggggc 218 ||||| ||||||||||||||||||| Sbjct: 93441 tgggagagaaaaatgagaaaggggc 93465
>gb|AC009854.9| Homo sapiens chromosome 18, clone RP11-333A13, complete sequence Length = 207293 Score = 42.1 bits (21), Expect = 2.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 194 tgggatagaaaaatgagaaaggggc 218 ||||| ||||||||||||||||||| Sbjct: 25127 tgggagagaaaaatgagaaaggggc 25103
>gb|AC161601.4| Mus musculus BAC clone RP23-333L19 from chromosome 3, complete sequence Length = 200393 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 706 gaggagctttgctttgagcat 726 ||||||||||||||||||||| Sbjct: 189332 gaggagctttgctttgagcat 189312
>gb|AC018731.5| Homo sapiens BAC clone RP11-52K24 from 2, complete sequence Length = 140174 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 198 atagaaaaatgagaaaggggc 218 ||||||||||||||||||||| Sbjct: 79491 atagaaaaatgagaaaggggc 79511
>dbj|AP004959.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT21I12, TM0136, complete sequence Length = 81332 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 215 gggcctaaactggttcgcatg 235 ||||||||||||||||||||| Sbjct: 77507 gggcctaaactggttcgcatg 77527 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,729,764 Number of Sequences: 3902068 Number of extensions: 6729764 Number of successful extensions: 119446 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 19 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 119347 Number of HSP's gapped (non-prelim): 96 length of query: 784 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 761 effective length of database: 17,143,297,704 effective search space: 13046049552744 effective search space used: 13046049552744 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 21 (42.1 bits)