>PIR_ARATH (Q5S2C3) Protein PIR (PIR of plants) (Protein PIROGI) (Protein|
            KLUNKER) (AtSRA1)
          Length = 1283

 Score =  179 bits (453), Expect = 6e-45
 Identities = 88/133 (66%), Positives = 107/133 (80%), Gaps = 1/133 (0%)
 Frame = -3

Query: 547  DSMTNP-SKKREMVGDSVAWAGCTIMYLLGQQLHFELFDFSYQFLNVAEIETATVSLYQP 371
            + +T P S + E++GDS+AW GCTI+YLLGQQLHFELFDFSYQ LNV+E+ET + S    
Sbjct: 1152 EEITAPQSAQHEVLGDSIAWGGCTIIYLLGQQLHFELFDFSYQVLNVSEVETVSAS---- 1207

Query: 370  TDRSKSPNIFQGYEVILEAMRKARRLNNHVFSMLRARCPLEDKVACAIKPSGAPLHRMKF 191
                ++P I QG+E +LE M+KARRLNNHVFSML+ARCPLEDK ACAIK SGAPL R++F
Sbjct: 1208 -HTHRNPQIHQGWEGLLEGMKKARRLNNHVFSMLKARCPLEDKTACAIKQSGAPLPRVRF 1266

Query: 190  SNIVSAFETLPQR 152
             N VSAFETLPQ+
Sbjct: 1267 ENTVSAFETLPQK 1279

>TOP3B_MOUSE (Q9Z321) DNA topoisomerase 3-beta-1 (EC 5.99.1.2) (DNA|
           topoisomerase III beta-1)
          Length = 862

 Score = 32.3 bits (72), Expect = 0.90
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = +2

Query: 215 PAWLDSARNLVLEGAARPQHGEHVVVQPPSLPHRFKDDLVALEDIW 352
           P W DS + L+ EG  RP+ G      PP  P +   +     D W
Sbjct: 361 PYWADSVKQLLAEGINRPRKGHDAGDHPPITPMKSATEAELGGDAW 406

>TOP3B_HUMAN (O95985) DNA topoisomerase 3-beta-1 (EC 5.99.1.2) (DNA|
           topoisomerase III beta-1)
          Length = 862

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = +2

Query: 215 PAWLDSARNLVLEGAARPQHGEHVVVQPPSLPHRFKDDLVALEDIW 352
           P W D+ + L+ EG  RP+ G      PP  P +   +     D W
Sbjct: 361 PYWADTVKRLLAEGINRPRKGHDAGDHPPITPMKSATEAELGGDAW 406

>THIE_DEIRA (Q9RYX9) Thiamine-phosphate pyrophosphorylase (EC 2.5.1.3) (TMP|
           pyrophosphorylase) (TMP-PPase) (Thiamine-phosphate
           synthase)
          Length = 280

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = -2

Query: 353 PKYLPRLRGHP*SDEEG*EAEQPRVLHAEGALPPRGQGCVRYQAKRG 213
           P  LP LRG P   +   +  QP++L    A P  G+G +R + +RG
Sbjct: 7   PLTLPPLRGSPPLPQVERDRTQPQLLAFADAFPSEGRGELRSRERRG 53


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,429,890
Number of Sequences: 219361
Number of extensions: 1456782
Number of successful extensions: 3556
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3555
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4430660157
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)