ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags35l01 |
|---|---|
| Clone Library Name | barley_pub |
| No. | Definition | Score (bits) |
E Value |
1 | RS143_ARATH (P42036) 40S ribosomal protein S14-3 | 40 | 0.003 | 2 | RS142_MAIZE (P19951) 40S ribosomal protein S14 (Clone MCH2) | 37 | 0.026 | 3 | RS142_ARATH (Q9CAX6) 40S ribosomal protein S14-2 | 37 | 0.026 | 4 | RS141_ARATH (Q9SIH0) 40S ribosomal protein S14-1 | 36 | 0.045 | 5 | RS141_MAIZE (P19950) 40S ribosomal protein S14 (Clone MCH1) | 35 | 0.13 | 6 | RS14_LUPLU (O22584) 40S ribosomal protein S14 | 33 | 0.38 | 7 | G10_BRARE (Q567Z7) Protein G10 homolog | 30 | 3.2 | 8 | PHAG_RHIME (Q9Z3Q3) Probable K(+)/H(+) antiporter subunit G (pH ... | 29 | 5.5 | 9 | AGRN_CHICK (P31696) Agrin (Fragment) | 29 | 7.2 | 10 | G10_XENLA (P12805) Protein G10 | 29 | 7.2 | 11 | G10_RAT (O70454) Protein G10 homolog (EDG-2) | 29 | 7.2 | 12 | G10_HUMAN (P41223) Protein G10 homolog (EDG-2) | 29 | 7.2 | 13 | G10_GECJA (Q66VE5) Protein G10 homolog | 29 | 7.2 | 14 | Y417_ARCFU (O29830) Hypothetical protein AF0417 | 28 | 9.4 | 15 | PTN22_MOUSE (P29352) Tyrosine-protein phosphatase non-receptor t... | 28 | 9.4 |
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>RS143_ARATH (P42036) 40S ribosomal protein S14-3| Length = 150 Score = 40.0 bits (92), Expect = 0.003 Identities = 18/33 (54%), Positives = 23/33 (69%) Frame = -2 Query: 313 KRKTREPKWGNVTVEPVVREGDHVFDIAQSLAT 215 KRKT+EPK NVT+ P VREG+ VF + A+ Sbjct: 3 KRKTKEPKVENVTLGPAVREGEQVFGVVHVFAS 35
>RS142_MAIZE (P19951) 40S ribosomal protein S14 (Clone MCH2)| Length = 150 Score = 37.0 bits (84), Expect = 0.026 Identities = 18/33 (54%), Positives = 24/33 (72%) Frame = -2 Query: 313 KRKTREPKWGNVTVEPVVREGDHVFDIAQSLAT 215 ++KTREPK NV + P VREG+HVF +A A+ Sbjct: 4 RKKTREPKEENV-LGPAVREGEHVFGVAHIFAS 35
>RS142_ARATH (Q9CAX6) 40S ribosomal protein S14-2| Length = 150 Score = 37.0 bits (84), Expect = 0.026 Identities = 17/33 (51%), Positives = 22/33 (66%) Frame = -2 Query: 313 KRKTREPKWGNVTVEPVVREGDHVFDIAQSLAT 215 KRKT+EPK VT+ P VREG+ VF + A+ Sbjct: 3 KRKTKEPKVETVTLGPSVREGEQVFGVVHIFAS 35
>RS141_ARATH (Q9SIH0) 40S ribosomal protein S14-1| Length = 150 Score = 36.2 bits (82), Expect = 0.045 Identities = 17/33 (51%), Positives = 22/33 (66%) Frame = -2 Query: 313 KRKTREPKWGNVTVEPVVREGDHVFDIAQSLAT 215 KRKT+EPK VT+ P VREG+ VF + A+ Sbjct: 3 KRKTKEPKVDVVTLGPSVREGEQVFGVVHIFAS 35
>RS141_MAIZE (P19950) 40S ribosomal protein S14 (Clone MCH1)| Length = 149 Score = 34.7 bits (78), Expect = 0.13 Identities = 18/33 (54%), Positives = 23/33 (69%) Frame = -2 Query: 313 KRKTREPKWGNVTVEPVVREGDHVFDIAQSLAT 215 +RKTREPK NV + P VREG+ VF +A A+ Sbjct: 3 RRKTREPKEENV-LGPTVREGEFVFGVAHIFAS 34
>RS14_LUPLU (O22584) 40S ribosomal protein S14| Length = 150 Score = 33.1 bits (74), Expect = 0.38 Identities = 14/33 (42%), Positives = 22/33 (66%) Frame = -2 Query: 313 KRKTREPKWGNVTVEPVVREGDHVFDIAQSLAT 215 +RK R+ K VT+ P V +G+HVF +A+ A+ Sbjct: 3 RRKVRDTKEETVTLGPAVSDGEHVFGVARIFAS 35
>G10_BRARE (Q567Z7) Protein G10 homolog| Length = 144 Score = 30.0 bits (66), Expect = 3.2 Identities = 20/63 (31%), Positives = 30/63 (47%) Frame = -2 Query: 325 MCKFKRKTREPKWGNVTVEPVVREGDHVFDIAQSLATEEGMLLFCLFPVLTMVAQRVRHV 146 M K KR + P G VEP + E D A++ E + L+P+ + QR R++ Sbjct: 1 MPKVKRSRKPPPDGWELVEPTLDELDQKMREAETEPHEGKRKVESLWPIFRLHHQRSRYI 60 Query: 145 FHL 137 F L Sbjct: 61 FDL 63
>PHAG_RHIME (Q9Z3Q3) Probable K(+)/H(+) antiporter subunit G (pH adaptation| potassium efflux system protein G) (Pha system subunit G) Length = 121 Score = 29.3 bits (64), Expect = 5.5 Identities = 13/36 (36%), Positives = 20/36 (55%) Frame = -2 Query: 232 AQSLATEEGMLLFCLFPVLTMVAQRVRHVFHLTMVI 125 A ++AT G +L CL +L + R VFH ++I Sbjct: 45 APTIATSGGTILLCLASILCFAVLQSRWVFHEVLII 80
>AGRN_CHICK (P31696) Agrin (Fragment)| Length = 1955 Score = 28.9 bits (63), Expect = 7.2 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 5/43 (11%) Frame = -1 Query: 164 PTSPACFSSDYGHP-----ASSACCA*QDLVIAIEGACRACTT 51 P SP C S D + + C Q+L + +GACRA TT Sbjct: 596 PRSPVCGSDDVTYANECELKKTRCEKRQNLYVTSQGACRALTT 638
>G10_XENLA (P12805) Protein G10| Length = 144 Score = 28.9 bits (63), Expect = 7.2 Identities = 19/76 (25%), Positives = 35/76 (46%) Frame = -2 Query: 325 MCKFKRKTREPKWGNVTVEPVVREGDHVFDIAQSLATEEGMLLFCLFPVLTMVAQRVRHV 146 M K KR + P G +EP + E D A++ E + L+P+ + Q+ R++ Sbjct: 1 MPKVKRSRKPPPDGWELIEPTLDELDQKMREAETDPHEGKRKVESLWPIFRIHHQKTRYI 60 Query: 145 FHLTMVIQQVRHVVHD 98 F L + + ++D Sbjct: 61 FDLFYKRKAISRELYD 76
>G10_RAT (O70454) Protein G10 homolog (EDG-2)| Length = 144 Score = 28.9 bits (63), Expect = 7.2 Identities = 18/63 (28%), Positives = 30/63 (47%) Frame = -2 Query: 325 MCKFKRKTREPKWGNVTVEPVVREGDHVFDIAQSLATEEGMLLFCLFPVLTMVAQRVRHV 146 M K KR + P G +EP + E D A++ E + L+P+ + Q+ R++ Sbjct: 1 MPKVKRSRKAPPDGWELIEPTLDELDQKMREAETEPHEGKRKVESLWPIFRIHHQKTRYI 60 Query: 145 FHL 137 F L Sbjct: 61 FDL 63
>G10_HUMAN (P41223) Protein G10 homolog (EDG-2)| Length = 144 Score = 28.9 bits (63), Expect = 7.2 Identities = 18/63 (28%), Positives = 30/63 (47%) Frame = -2 Query: 325 MCKFKRKTREPKWGNVTVEPVVREGDHVFDIAQSLATEEGMLLFCLFPVLTMVAQRVRHV 146 M K KR + P G +EP + E D A++ E + L+P+ + Q+ R++ Sbjct: 1 MPKVKRSRKAPPDGWELIEPTLDELDQKMREAETEPHEGKRKVESLWPIFRIHHQKTRYI 60 Query: 145 FHL 137 F L Sbjct: 61 FDL 63
>G10_GECJA (Q66VE5) Protein G10 homolog| Length = 144 Score = 28.9 bits (63), Expect = 7.2 Identities = 18/63 (28%), Positives = 30/63 (47%) Frame = -2 Query: 325 MCKFKRKTREPKWGNVTVEPVVREGDHVFDIAQSLATEEGMLLFCLFPVLTMVAQRVRHV 146 M K KR + P G +EP + E D A++ E + L+P+ + Q+ R++ Sbjct: 1 MPKVKRSRKAPPDGWELIEPTLDELDQKMREAETEPHEGKRKVESLWPIFRIHHQKTRYI 60 Query: 145 FHL 137 F L Sbjct: 61 FDL 63
>Y417_ARCFU (O29830) Hypothetical protein AF0417| Length = 190 Score = 28.5 bits (62), Expect = 9.4 Identities = 19/72 (26%), Positives = 31/72 (43%) Frame = -2 Query: 358 GLDDNIDHDDAMCKFKRKTREPKWGNVTVEPVVREGDHVFDIAQSLATEEGMLLFCLFPV 179 GLDD+ + KFKRK +P+ G+VT E + + + M + F + Sbjct: 45 GLDDDGNVKTVTFKFKRKELDPETGDVTDVDTTVEAPLLTILPVPFIRIKDMTVHFNFTI 104 Query: 178 LTMVAQRVRHVF 143 T + +H F Sbjct: 105 KTSAQDKTQHDF 116
>PTN22_MOUSE (P29352) Tyrosine-protein phosphatase non-receptor type 22 (EC| 3.1.3.48) (Hematopoietic cell protein-tyrosine phosphatase 70Z-PEP) Length = 802 Score = 28.5 bits (62), Expect = 9.4 Identities = 13/26 (50%), Positives = 17/26 (65%) Frame = -2 Query: 439 APGQRTTSDIRPPLMSGTPHSWI*VD 362 AP +RT +I PPL TP S+I V+ Sbjct: 603 APSRRTDDEIPPPLPERTPESFIVVE 628 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 66,487,076 Number of Sequences: 219361 Number of extensions: 1362491 Number of successful extensions: 3382 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 3273 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3381 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3188886965 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
