ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal1o17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MLL3_HUMAN (Q8NEZ4) Myeloid/lymphoid or mixed-lineage leukemia p... 33 0.81
2IGHG3_HUMAN (P01860) Ig gamma-3 chain C region (Heavy chain dise... 31 2.4
3WASF3_HUMAN (Q9UPY6) Wiskott-Aldrich syndrome protein family mem... 29 9.0

>MLL3_HUMAN (Q8NEZ4) Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog|
            (Histone-lysine N-methyltransferase, H3 lysine-4 specific
            MLL3) (EC 2.1.1.43) (Homologous to ALR protein)
          Length = 4911

 Score = 32.7 bits (73), Expect = 0.81
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = -1

Query: 310  PSTRNRXLRTPPTHPRCSATRTPTHXPSCELPRQCDEHDAKP 185
            PST +  +  PPT      T TP      ELP+Q D+   +P
Sbjct: 3622 PSTPHSDITAPPTPGISETTSTPAVSTPSELPQQADQESVEP 3663



to top

>IGHG3_HUMAN (P01860) Ig gamma-3 chain C region (Heavy chain disease protein)|
           (HDC)
          Length = 290

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
 Frame = -1

Query: 283 TPPTHPRCSATR---TPTHXPSCELPRQCDEHDAKPRLAA 173
           TPP  PRC   +   TP   P C  P+ CD     PR  A
Sbjct: 35  TPPPCPRCPEPKSCDTPPPCPRCPEPKSCDTPPPCPRCPA 74



to top

>WASF3_HUMAN (Q9UPY6) Wiskott-Aldrich syndrome protein family member 3|
           (WASP-family protein member 3) (WAVE-3 protein)
           (Verprolin homology domain-containing protein 3)
          Length = 502

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = -1

Query: 310 PSTRNRXLRTPPTHPRCSATRTPTHXPSCELPRQCDEHDAKPRLAAA 170
           P+T N  L   P  P  +A   P H P+     Q  EH+ +P  A+A
Sbjct: 251 PATPNHSLHPQPVTPSYAAGDVPPHGPA----SQAAEHEYRPPSASA 293


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,109,360
Number of Sequences: 219361
Number of extensions: 692776
Number of successful extensions: 1728
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1725
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5216272880
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top