ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags35k12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK062935.1| Oryza sativa (japonica cultivar-group) cDNA clon... 109 4e-21
2gb|AY110377.1| Zea mays CL29192_1 mRNA sequence 98 1e-17
3dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 76 5e-11
4dbj|AP003633.3| Oryza sativa (japonica cultivar-group) genomic D... 76 5e-11
5dbj|AP003635.2| Oryza sativa (japonica cultivar-group) genomic D... 76 5e-11
6ref|XM_316373.2| Anopheles gambiae str. PEST ENSANGP00000012999 ... 44 0.18
7ref|NM_175812.2| Bos taurus histidine triad nucleotide binding p... 40 2.8
8gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete ... 40 2.8
9ref|XM_779364.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 2.8
10gb|BC102553.1| Bos taurus histidine triad nucleotide binding pro... 40 2.8
11gb|AY610407.1| Sus scrofa clone rhlv38b_j5.y1.abd, mRNA sequence 40 2.8
12gb|U09405.1|BTU09405 Bos taurus putative protein kinase C inhibi... 40 2.8

>dbj|AK062935.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-109-B01, full
           insert sequence
          Length = 450

 Score =  109 bits (55), Expect = 4e-21
 Identities = 112/131 (85%)
 Strand = Plus / Minus

                                                                       
Query: 89  ggccatttcatctgccttccgccgagtacatgcacgtgcagatggtagactgattgacat 148
           |||||||||||||||||||| || |||||||||| |||||| || |||||||||||||||
Sbjct: 266 ggccatttcatctgccttccacctagtacatgcaagtgcaggtgatagactgattgacat 207

                                                                       
Query: 149 ccttctgctccgttgtttatgacgacgcggaatccatctgctacgccttccttctaggcc 208
           ||||  | ||| |||||||||||||| ||| | || || ||||  ||||||||||  |||
Sbjct: 206 cctttaggtccattgtttatgacgacacggtacccttcagctataccttccttctcagcc 147

                      
Query: 209 actactttcgc 219
           |||| ||||||
Sbjct: 146 actattttcgc 136



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>gb|AY110377.1| Zea mays CL29192_1 mRNA sequence
          Length = 843

 Score = 97.6 bits (49), Expect = 1e-17
 Identities = 106/125 (84%)
 Strand = Plus / Plus

                                                                       
Query: 95  ttcatctgccttccgccgagtacatgcacgtgcagatggtagactgattgacatccttct 154
           |||||||||||||| || |||||||||| ||||||||| ||||| ||||| |||||||| 
Sbjct: 284 ttcatctgccttccaccaagtacatgcaggtgcagatgatagacagattggcatccttca 343

                                                                       
Query: 155 gctccgttgtttatgacgacgcggaatccatctgctacgccttccttctaggccactact 214
           ||||| ||||| ||||| || ||| | |||   ||||| ||||||||||  |||||||||
Sbjct: 344 gctccattgttgatgacaacacggtacccactcgctacaccttccttctctgccactact 403

                
Query: 215 ttcgc 219
           |||||
Sbjct: 404 ttcgc 408



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 75.8 bits (38), Expect = 5e-11
 Identities = 53/58 (91%)
 Strand = Plus / Minus

                                                                          
Query: 89       ggccatttcatctgccttccgccgagtacatgcacgtgcagatggtagactgattgac 146
                |||||||||||||||||||| || |||||||||| |||||| || |||||||||||||
Sbjct: 27274981 ggccatttcatctgccttccacctagtacatgcaagtgcaggtgatagactgattgac 27274924



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>dbj|AP003633.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0637D03
          Length = 180159

 Score = 75.8 bits (38), Expect = 5e-11
 Identities = 53/58 (91%)
 Strand = Plus / Minus

                                                                        
Query: 89     ggccatttcatctgccttccgccgagtacatgcacgtgcagatggtagactgattgac 146
              |||||||||||||||||||| || |||||||||| |||||| || |||||||||||||
Sbjct: 131997 ggccatttcatctgccttccacctagtacatgcaagtgcaggtgatagactgattgac 131940



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>dbj|AP003635.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0686E06
          Length = 150474

 Score = 75.8 bits (38), Expect = 5e-11
 Identities = 53/58 (91%)
 Strand = Plus / Minus

                                                                       
Query: 89    ggccatttcatctgccttccgccgagtacatgcacgtgcagatggtagactgattgac 146
             |||||||||||||||||||| || |||||||||| |||||| || |||||||||||||
Sbjct: 17808 ggccatttcatctgccttccacctagtacatgcaagtgcaggtgatagactgattgac 17751



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>ref|XM_316373.2| Anopheles gambiae str. PEST ENSANGP00000012999
           (ENSANGG00000010510), mRNA
          Length = 480

 Score = 44.1 bits (22), Expect = 0.18
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                             
Query: 86  ggcggccatttcatctgccttccgccgagtacatgcacgtgcagatggta 135
           |||||||| |||||||||| ||||||||| |  ||||  |||||||||||
Sbjct: 378 ggcggccacttcatctgccgtccgccgaggaagtgcagatgcagatggta 329



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>ref|NM_175812.2| Bos taurus histidine triad nucleotide binding protein 1 (HINT1),
           mRNA
          Length = 544

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 77  acttaaccaggcggccatttcatctgcc 104
           ||||||||||| ||||| ||||||||||
Sbjct: 383 acttaaccaggaggccagttcatctgcc 356



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>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence
          Length = 3806533

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                               
Query: 107     ccgccgagtacatgcacgtgcagatggtagac 138
               |||||||| |||||||||||||  ||||||||
Sbjct: 3411894 ccgccgagcacatgcacgtgcaagtggtagac 3411925



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>ref|XM_779364.1| PREDICTED: Strongylocentrotus purpuratus similar to Histidine triad
           nucleotide-binding protein 2 (HINT-2) (HINT-3)
           (LOC579236), mRNA
          Length = 426

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 56/68 (82%)
 Strand = Plus / Minus

                                                                       
Query: 80  taaccaggcggccatttcatctgccttccgccgagtacatgcacgtgcagatggtagact 139
           ||||| || |||||||||||||| | ||| ||||  || || ||||| ||||| ||||| 
Sbjct: 425 taacctggaggccatttcatctgtcgtcctccgatcacgtgaacgtgtagatgatagacg 366

                   
Query: 140 gattgaca 147
           ||||||||
Sbjct: 365 gattgaca 358



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>gb|BC102553.1| Bos taurus histidine triad nucleotide binding protein 1, mRNA (cDNA
           clone MGC:127759 IMAGE:7962576), complete cds
          Length = 579

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 77  acttaaccaggcggccatttcatctgcc 104
           ||||||||||| ||||| ||||||||||
Sbjct: 411 acttaaccaggaggccagttcatctgcc 384



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>gb|AY610407.1| Sus scrofa clone rhlv38b_j5.y1.abd, mRNA sequence
          Length = 462

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 77  acttaaccaggcggccatttcatctgcc 104
           ||||||||||| ||||| ||||||||||
Sbjct: 393 acttaaccaggaggccagttcatctgcc 366



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>gb|U09405.1|BTU09405 Bos taurus putative protein kinase C inhibitor mRNA, complete cds
          Length = 544

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 77  acttaaccaggcggccatttcatctgcc 104
           ||||||||||| ||||| ||||||||||
Sbjct: 383 acttaaccaggaggccagttcatctgcc 356


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,177,714
Number of Sequences: 3902068
Number of extensions: 1177714
Number of successful extensions: 70653
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 70602
Number of HSP's gapped (non-prelim): 50
length of query: 221
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 199
effective length of database: 17,147,199,772
effective search space: 3412292754628
effective search space used: 3412292754628
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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