| Clone Name | rbags35k12 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK062935.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-109-B01, full insert sequence Length = 450 Score = 109 bits (55), Expect = 4e-21 Identities = 112/131 (85%) Strand = Plus / Minus Query: 89 ggccatttcatctgccttccgccgagtacatgcacgtgcagatggtagactgattgacat 148 |||||||||||||||||||| || |||||||||| |||||| || ||||||||||||||| Sbjct: 266 ggccatttcatctgccttccacctagtacatgcaagtgcaggtgatagactgattgacat 207 Query: 149 ccttctgctccgttgtttatgacgacgcggaatccatctgctacgccttccttctaggcc 208 |||| | ||| |||||||||||||| ||| | || || |||| |||||||||| ||| Sbjct: 206 cctttaggtccattgtttatgacgacacggtacccttcagctataccttccttctcagcc 147 Query: 209 actactttcgc 219 |||| |||||| Sbjct: 146 actattttcgc 136
>gb|AY110377.1| Zea mays CL29192_1 mRNA sequence Length = 843 Score = 97.6 bits (49), Expect = 1e-17 Identities = 106/125 (84%) Strand = Plus / Plus Query: 95 ttcatctgccttccgccgagtacatgcacgtgcagatggtagactgattgacatccttct 154 |||||||||||||| || |||||||||| ||||||||| ||||| ||||| |||||||| Sbjct: 284 ttcatctgccttccaccaagtacatgcaggtgcagatgatagacagattggcatccttca 343 Query: 155 gctccgttgtttatgacgacgcggaatccatctgctacgccttccttctaggccactact 214 ||||| ||||| ||||| || ||| | ||| ||||| |||||||||| ||||||||| Sbjct: 344 gctccattgttgatgacaacacggtacccactcgctacaccttccttctctgccactact 403 Query: 215 ttcgc 219 ||||| Sbjct: 404 ttcgc 408
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 75.8 bits (38), Expect = 5e-11 Identities = 53/58 (91%) Strand = Plus / Minus Query: 89 ggccatttcatctgccttccgccgagtacatgcacgtgcagatggtagactgattgac 146 |||||||||||||||||||| || |||||||||| |||||| || ||||||||||||| Sbjct: 27274981 ggccatttcatctgccttccacctagtacatgcaagtgcaggtgatagactgattgac 27274924
>dbj|AP003633.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0637D03 Length = 180159 Score = 75.8 bits (38), Expect = 5e-11 Identities = 53/58 (91%) Strand = Plus / Minus Query: 89 ggccatttcatctgccttccgccgagtacatgcacgtgcagatggtagactgattgac 146 |||||||||||||||||||| || |||||||||| |||||| || ||||||||||||| Sbjct: 131997 ggccatttcatctgccttccacctagtacatgcaagtgcaggtgatagactgattgac 131940
>dbj|AP003635.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0686E06 Length = 150474 Score = 75.8 bits (38), Expect = 5e-11 Identities = 53/58 (91%) Strand = Plus / Minus Query: 89 ggccatttcatctgccttccgccgagtacatgcacgtgcagatggtagactgattgac 146 |||||||||||||||||||| || |||||||||| |||||| || ||||||||||||| Sbjct: 17808 ggccatttcatctgccttccacctagtacatgcaagtgcaggtgatagactgattgac 17751
>ref|XM_316373.2| Anopheles gambiae str. PEST ENSANGP00000012999 (ENSANGG00000010510), mRNA Length = 480 Score = 44.1 bits (22), Expect = 0.18 Identities = 43/50 (86%) Strand = Plus / Minus Query: 86 ggcggccatttcatctgccttccgccgagtacatgcacgtgcagatggta 135 |||||||| |||||||||| ||||||||| | |||| ||||||||||| Sbjct: 378 ggcggccacttcatctgccgtccgccgaggaagtgcagatgcagatggta 329
>ref|NM_175812.2| Bos taurus histidine triad nucleotide binding protein 1 (HINT1), mRNA Length = 544 Score = 40.1 bits (20), Expect = 2.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 77 acttaaccaggcggccatttcatctgcc 104 ||||||||||| ||||| |||||||||| Sbjct: 383 acttaaccaggaggccagttcatctgcc 356
>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence Length = 3806533 Score = 40.1 bits (20), Expect = 2.8 Identities = 29/32 (90%) Strand = Plus / Plus Query: 107 ccgccgagtacatgcacgtgcagatggtagac 138 |||||||| ||||||||||||| |||||||| Sbjct: 3411894 ccgccgagcacatgcacgtgcaagtggtagac 3411925
>ref|XM_779364.1| PREDICTED: Strongylocentrotus purpuratus similar to Histidine triad nucleotide-binding protein 2 (HINT-2) (HINT-3) (LOC579236), mRNA Length = 426 Score = 40.1 bits (20), Expect = 2.8 Identities = 56/68 (82%) Strand = Plus / Minus Query: 80 taaccaggcggccatttcatctgccttccgccgagtacatgcacgtgcagatggtagact 139 ||||| || |||||||||||||| | ||| |||| || || ||||| ||||| ||||| Sbjct: 425 taacctggaggccatttcatctgtcgtcctccgatcacgtgaacgtgtagatgatagacg 366 Query: 140 gattgaca 147 |||||||| Sbjct: 365 gattgaca 358
>gb|BC102553.1| Bos taurus histidine triad nucleotide binding protein 1, mRNA (cDNA clone MGC:127759 IMAGE:7962576), complete cds Length = 579 Score = 40.1 bits (20), Expect = 2.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 77 acttaaccaggcggccatttcatctgcc 104 ||||||||||| ||||| |||||||||| Sbjct: 411 acttaaccaggaggccagttcatctgcc 384
>gb|AY610407.1| Sus scrofa clone rhlv38b_j5.y1.abd, mRNA sequence Length = 462 Score = 40.1 bits (20), Expect = 2.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 77 acttaaccaggcggccatttcatctgcc 104 ||||||||||| ||||| |||||||||| Sbjct: 393 acttaaccaggaggccagttcatctgcc 366
>gb|U09405.1|BTU09405 Bos taurus putative protein kinase C inhibitor mRNA, complete cds Length = 544 Score = 40.1 bits (20), Expect = 2.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 77 acttaaccaggcggccatttcatctgcc 104 ||||||||||| ||||| |||||||||| Sbjct: 383 acttaaccaggaggccagttcatctgcc 356 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,177,714 Number of Sequences: 3902068 Number of extensions: 1177714 Number of successful extensions: 70653 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 12 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 70602 Number of HSP's gapped (non-prelim): 50 length of query: 221 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 199 effective length of database: 17,147,199,772 effective search space: 3412292754628 effective search space used: 3412292754628 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)