ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags35k08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1KING1_ARATH (Q8LBB2) SNF1-related protein kinase regulatory gamm... 32 0.78
2CCR7_HUMAN (P32248) C-C chemokine receptor type 7 precursor (C-C... 28 8.6
3SYG_TREPA (O83678) Glycyl-tRNA synthetase (EC 6.1.1.14) (Glycine... 28 8.6

>KING1_ARATH (Q8LBB2) SNF1-related protein kinase regulatory gamma subunit 1|
           (AKIN gamma1) (AKING1)
          Length = 424

 Score = 32.0 bits (71), Expect = 0.78
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = -1

Query: 442 VIXSIGSRITHRIYXXXXXXXXXXXVTLRDVISCFIHEPPGFCDSYLVSAM 290
           +I  + +   HRIY           +TLRD+I+  +HEP G+   +    M
Sbjct: 366 LILMLDAEKIHRIYVVDDFGNLEGLITLRDIIARLVHEPSGYFGDFFDGVM 416



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>CCR7_HUMAN (P32248) C-C chemokine receptor type 7 precursor (C-C CKR-7)|
           (CC-CKR-7) (CCR-7) (MIP-3 beta receptor) (EBV-induced
           G-protein coupled receptor 1) (EBI1) (BLR2) (CD197
           antigen) (CDw197)
          Length = 378

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = -3

Query: 320 LLRQLSCFSDGEARGQSGCRFFRREQLSCSRECMT 216
           L + L C S  + R  S CR  RR  +S   E  T
Sbjct: 340 LFKDLGCLSQEQLRQWSSCRHIRRSSMSVEAETTT 374



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>SYG_TREPA (O83678) Glycyl-tRNA synthetase (EC 6.1.1.14) (Glycine--tRNA|
           ligase) (GlyRS)
          Length = 462

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 15/39 (38%), Positives = 17/39 (43%)
 Frame = -2

Query: 120 GVTRHFSDLLVCTLVCQLLYRVPDFADPHLFXWCKHCSG 4
           G   HFSD LV   VC+  +R    A P     C  C G
Sbjct: 74  GHVDHFSDPLVDCTVCKSRFRADQVAVPSAGGPCPQCGG 112


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,688,531
Number of Sequences: 219361
Number of extensions: 1003806
Number of successful extensions: 2222
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2222
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2909956200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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