| Clone Name | rbags35k06 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY111585.1| Zea mays CL52_1 mRNA sequence Length = 861 Score = 394 bits (199), Expect = e-106 Identities = 375/437 (85%) Strand = Plus / Minus Query: 79 tctacttctttcggaacaggtgatgtgcaaccatccattcatcaccattgttatatccga 138 |||||||||||||||||| || ||| ||||||||||||||||| |||||||| ||||| Sbjct: 675 tctacttctttcggaacaagtaatgggcaaccatccattcatctccattgttgtatccnn 616 Query: 139 aaagttcggcgactgagatgaagaacgtcctccaataagctatccatttggtagctgatt 198 |||| || || |||||||||||||||| ||||||||||||||||||||||| |||| Sbjct: 615 nnngttcagctaccgagatgaagaacgtccgccaataagctatccatttggtagtcgatt 556 Query: 199 ctctcccataagtattctcaaagattggccttatggtagcgatgttcctgtccatacgtt 258 | |||||||||| | ||| ||||| ||||||| | || |||| || |||||||||||| Sbjct: 555 ccttcccataagtttcctcgaagatcagccttattgaagtgatgctcttgtccatacgtt 496 Query: 259 tcagccactcctcactagttctagcataatgtgtgccactgacaagccaatgattgacca 318 | ||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||| Sbjct: 495 ttagccactcctcgctagttctagcataatgcgtgccactgacaagccaatgatctacca 436 Query: 319 cagatacatcttcctgaaagtagagaaggaggtttgctgatggcattgttcctccagtga 378 |||||||||| ||||||||||| ||||| |||||||| |||||||||||||||||||||| Sbjct: 435 cagatacatcctcctgaaagtatagaagtaggtttgcagatggcattgttcctccagtga 376 Query: 379 agaaataccttgtgatccaatcatcatcattcttgtcctcgaagtgatacgcaaatgtct 438 |||||||||| |||||||| |||||||| ||||| |||||||| | ||||| | Sbjct: 375 agaaatacctcgtgatccagtcatcatcgnnnnnatcctcaaagtgatatggaaatgctt 316 Query: 439 tgtggcagaagtagtgaacaaacaataaggaatcctctttcatccatctggatatcttct 498 ||||||||||| |||||| || | || | ||||||||||||||| ||||||||||||| Sbjct: 315 tgtggcagaagaggtgaacgaatagtaggccatcctctttcatccacctggatatcttct 256 Query: 499 taagaagtgccttgtag 515 ||||||| | ||||||| Sbjct: 255 taagaagcgacttgtag 239 Score = 123 bits (62), Expect = 9e-25 Identities = 92/102 (90%) Strand = Plus / Minus Query: 616 ctcaaacatctctatggatatgatcctgtcaaaagaacgctccatctcaaacttgctgat 675 ||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||| Sbjct: 227 ctcaaacatctctatagatacgatcctgtcaaaagagcgctccatctcaaacttgctgat 168 Query: 676 gtctgctacaattatctcaacattggatagctcattttccct 717 ||| ||||| |||||||||| ||| || ||||| || ||||| Sbjct: 167 gtcggctacgattatctcaatatttgacagctcgttatccct 126
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 206 bits (104), Expect = 8e-50 Identities = 173/196 (88%) Strand = Plus / Minus Query: 76 acttctacttctttcggaacaggtgatgtgcaaccatccattcatcaccattgttatatc 135 ||||||||||||| ||||||| | ||| ||||||||||| ||||| |||||||| |||| Sbjct: 21922774 acttctacttcttccggaacaagaaatgcgcaaccatccactcatcgccattgttgtatc 21922715 Query: 136 cgaaaagttcggcgactgagatgaagaacgtcctccaataagctatccatttggtagctg 195 | ||||| ||||||||||||||||||||||| | ||| |||||||||||||||||||||| Sbjct: 21922714 caaaaagctcggcgactgagatgaagaacgtgcgccagtaagctatccatttggtagctg 21922655 Query: 196 attctctcccataagtattctcaaagattggccttatggtagcgatgttcctgtccatac 255 |||| |||| ||||| |||||||| ||||||||||||| | |||||| ||||||||| Sbjct: 21922654 attccttcccgtaagttttctcaaatattggccttatggacgtgatgtttttgtccatac 21922595 Query: 256 gtttcagccactcctc 271 |||||||||||||||| Sbjct: 21922594 gtttcagccactcctc 21922579 Score = 159 bits (80), Expect = 2e-35 Identities = 107/116 (92%) Strand = Plus / Minus Query: 415 cctcgaagtgatacgcaaatgtcttgtggcagaagtagtgaacaaacaataaggaatcct 474 |||| ||||| || |||||||| |||||||||||||||||||||||||||||| |||| Sbjct: 21921432 cctcaaagtggtatgcaaatgttttgtggcagaagtagtgaacaaacaataagctgtcct 21921373 Query: 475 ctttcatccatctggatatcttcttaagaagtgccttgtagtttttcatgtgctgc 530 |||||||||||||||||| |||||||||||||||||| |||||||||||||||||| Sbjct: 21921372 ctttcatccatctggataacttcttaagaagtgccttatagtttttcatgtgctgc 21921317 Score = 153 bits (77), Expect = 1e-33 Identities = 98/105 (93%) Strand = Plus / Minus Query: 613 tacctcaaacatctctatggatatgatcctgtcaaaagaacgctccatctcaaacttgct 672 |||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||| Sbjct: 21921242 tacctcaaacatttctatggaaatgatcctgtcaaaagatcgctccatctcaaacttgct 21921183 Query: 673 gatgtctgctacaattatctcaacattggatagctcattttccct 717 ||||||||| ||||||||||| ||||| ||||| ||||||||||| Sbjct: 21921182 gatgtctgccacaattatctcgacatttgatagttcattttccct 21921138 Score = 133 bits (67), Expect = 1e-27 Identities = 82/87 (94%) Strand = Plus / Minus Query: 331 cctgaaagtagagaaggaggtttgctgatggcattgttcctccagtgaagaaataccttg 390 |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 21921866 cctgaaagtaaaggaggaggtttgctgatggcattgttcctccagtgaagaaataccttg 21921807 Query: 391 tgatccaatcatcatcattcttgtcct 417 | ||||||||||| ||||| ||||||| Sbjct: 21921806 ttatccaatcatcttcattgttgtcct 21921780 Score = 75.8 bits (38), Expect = 2e-10 Identities = 56/62 (90%) Strand = Plus / Minus Query: 273 ctagttctagcataatgtgtgccactgacaagccaatgattgaccacagatacatcttcc 332 |||||||| |||||||| |||||||||||||||||||||||| | | ||||||||| ||| Sbjct: 21922058 ctagttctggcataatgcgtgccactgacaagccaatgattggcaatagatacatcgtcc 21921999 Query: 333 tg 334 || Sbjct: 21921998 tg 21921997
>dbj|AP004729.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0006A22 Length = 190690 Score = 206 bits (104), Expect = 8e-50 Identities = 173/196 (88%) Strand = Plus / Minus Query: 76 acttctacttctttcggaacaggtgatgtgcaaccatccattcatcaccattgttatatc 135 ||||||||||||| ||||||| | ||| ||||||||||| ||||| |||||||| |||| Sbjct: 145259 acttctacttcttccggaacaagaaatgcgcaaccatccactcatcgccattgttgtatc 145200 Query: 136 cgaaaagttcggcgactgagatgaagaacgtcctccaataagctatccatttggtagctg 195 | ||||| ||||||||||||||||||||||| | ||| |||||||||||||||||||||| Sbjct: 145199 caaaaagctcggcgactgagatgaagaacgtgcgccagtaagctatccatttggtagctg 145140 Query: 196 attctctcccataagtattctcaaagattggccttatggtagcgatgttcctgtccatac 255 |||| |||| ||||| |||||||| ||||||||||||| | |||||| ||||||||| Sbjct: 145139 attccttcccgtaagttttctcaaatattggccttatggacgtgatgtttttgtccatac 145080 Query: 256 gtttcagccactcctc 271 |||||||||||||||| Sbjct: 145079 gtttcagccactcctc 145064 Score = 159 bits (80), Expect = 2e-35 Identities = 107/116 (92%) Strand = Plus / Minus Query: 415 cctcgaagtgatacgcaaatgtcttgtggcagaagtagtgaacaaacaataaggaatcct 474 |||| ||||| || |||||||| |||||||||||||||||||||||||||||| |||| Sbjct: 143917 cctcaaagtggtatgcaaatgttttgtggcagaagtagtgaacaaacaataagctgtcct 143858 Query: 475 ctttcatccatctggatatcttcttaagaagtgccttgtagtttttcatgtgctgc 530 |||||||||||||||||| |||||||||||||||||| |||||||||||||||||| Sbjct: 143857 ctttcatccatctggataacttcttaagaagtgccttatagtttttcatgtgctgc 143802 Score = 153 bits (77), Expect = 1e-33 Identities = 98/105 (93%) Strand = Plus / Minus Query: 613 tacctcaaacatctctatggatatgatcctgtcaaaagaacgctccatctcaaacttgct 672 |||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||| Sbjct: 143727 tacctcaaacatttctatggaaatgatcctgtcaaaagatcgctccatctcaaacttgct 143668 Query: 673 gatgtctgctacaattatctcaacattggatagctcattttccct 717 ||||||||| ||||||||||| ||||| ||||| ||||||||||| Sbjct: 143667 gatgtctgccacaattatctcgacatttgatagttcattttccct 143623 Score = 133 bits (67), Expect = 1e-27 Identities = 82/87 (94%) Strand = Plus / Minus Query: 331 cctgaaagtagagaaggaggtttgctgatggcattgttcctccagtgaagaaataccttg 390 |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 144351 cctgaaagtaaaggaggaggtttgctgatggcattgttcctccagtgaagaaataccttg 144292 Query: 391 tgatccaatcatcatcattcttgtcct 417 | ||||||||||| ||||| ||||||| Sbjct: 144291 ttatccaatcatcttcattgttgtcct 144265 Score = 75.8 bits (38), Expect = 2e-10 Identities = 56/62 (90%) Strand = Plus / Minus Query: 273 ctagttctagcataatgtgtgccactgacaagccaatgattgaccacagatacatcttcc 332 |||||||| |||||||| |||||||||||||||||||||||| | | ||||||||| ||| Sbjct: 144543 ctagttctggcataatgcgtgccactgacaagccaatgattggcaatagatacatcgtcc 144484 Query: 333 tg 334 || Sbjct: 144483 tg 144482
>ref|NM_119465.1| Arabidopsis thaliana (S)-coclaurine-N-methyltransferase/ S-adenosylmethionine-dependent methyltransferase/ cyclopropane-fatty-acyl-phospholipid synt> AT4G33110 mRNA, complete cds Length = 1324 Score = 99.6 bits (50), Expect = 1e-17 Identities = 95/110 (86%) Strand = Plus / Minus Query: 353 tgctgatggcattgttcctccagtgaagaaataccttgtgatccaatcatcatcattctt 412 ||||||||||||||||||||| ||||||| | ||||||||||| ||||| |||||| Sbjct: 877 tgctgatggcattgttcctccgctgaagaagtgtcttgtgatccagtcatcgtcattcac 818 Query: 413 gtcctcgaagtgatacgcaaatgtcttgtggcagaagtagtgaacaaaca 462 ||||| ||||| || ||||||||||| |||||||| ||||||||||||| Sbjct: 817 atcctcaaagtggtaagcaaatgtcttatggcagaaatagtgaacaaaca 768 Score = 54.0 bits (27), Expect = 7e-04 Identities = 60/71 (84%) Strand = Plus / Minus Query: 102 tgtgcaaccatccattcatcaccattgttatatccgaaaagttcggcgactgagatgaag 161 |||||||||||||| || || |||||||| ||||||||||| || || || | ||||||| Sbjct: 1128 tgtgcaaccatccactcttctccattgttgtatccgaaaagctcagcaaccgcgatgaag 1069 Query: 162 aacgtcctcca 172 || || ||||| Sbjct: 1068 aaggttctcca 1058
>gb|AY136408.1| Arabidopsis thaliana putative protein (At4g33110) mRNA, complete cds Length = 1319 Score = 99.6 bits (50), Expect = 1e-17 Identities = 95/110 (86%) Strand = Plus / Minus Query: 353 tgctgatggcattgttcctccagtgaagaaataccttgtgatccaatcatcatcattctt 412 ||||||||||||||||||||| ||||||| | ||||||||||| ||||| |||||| Sbjct: 871 tgctgatggcattgttcctccgctgaagaagtgtcttgtgatccagtcatcgtcattcac 812 Query: 413 gtcctcgaagtgatacgcaaatgtcttgtggcagaagtagtgaacaaaca 462 ||||| ||||| || ||||||||||| |||||||| ||||||||||||| Sbjct: 811 atcctcaaagtggtaagcaaatgtcttatggcagaaatagtgaacaaaca 762 Score = 54.0 bits (27), Expect = 7e-04 Identities = 60/71 (84%) Strand = Plus / Minus Query: 102 tgtgcaaccatccattcatcaccattgttatatccgaaaagttcggcgactgagatgaag 161 |||||||||||||| || || |||||||| ||||||||||| || || || | ||||||| Sbjct: 1122 tgtgcaaccatccactcttctccattgttgtatccgaaaagctcagcaaccgcgatgaag 1063 Query: 162 aacgtcctcca 172 || || ||||| Sbjct: 1062 aaggttctcca 1052
>gb|AY088221.1| Arabidopsis thaliana clone 4369 mRNA, complete sequence Length = 1324 Score = 99.6 bits (50), Expect = 1e-17 Identities = 95/110 (86%) Strand = Plus / Minus Query: 353 tgctgatggcattgttcctccagtgaagaaataccttgtgatccaatcatcatcattctt 412 ||||||||||||||||||||| ||||||| | ||||||||||| ||||| |||||| Sbjct: 877 tgctgatggcattgttcctccgctgaagaagtgtcttgtgatccagtcatcgtcattcac 818 Query: 413 gtcctcgaagtgatacgcaaatgtcttgtggcagaagtagtgaacaaaca 462 ||||| ||||| || ||||||||||| |||||||| ||||||||||||| Sbjct: 817 atcctcaaagtggtaagcaaatgtcttatggcagaaatagtgaacaaaca 768 Score = 54.0 bits (27), Expect = 7e-04 Identities = 60/71 (84%) Strand = Plus / Minus Query: 102 tgtgcaaccatccattcatcaccattgttatatccgaaaagttcggcgactgagatgaag 161 |||||||||||||| || || |||||||| ||||||||||| || || || | ||||||| Sbjct: 1128 tgtgcaaccatccactcttctccattgttgtatccgaaaagctcagcaaccgcgatgaag 1069 Query: 162 aacgtcctcca 172 || || ||||| Sbjct: 1068 aaggttctcca 1058
>dbj|AK118325.1| Arabidopsis thaliana At4g33110 mRNA for unknown protein, complete cds, clone: RAFL19-60-I17 Length = 1257 Score = 99.6 bits (50), Expect = 1e-17 Identities = 95/110 (86%) Strand = Plus / Minus Query: 353 tgctgatggcattgttcctccagtgaagaaataccttgtgatccaatcatcatcattctt 412 ||||||||||||||||||||| ||||||| | ||||||||||| ||||| |||||| Sbjct: 850 tgctgatggcattgttcctccgctgaagaagtgtcttgtgatccagtcatcgtcattcac 791 Query: 413 gtcctcgaagtgatacgcaaatgtcttgtggcagaagtagtgaacaaaca 462 ||||| ||||| || ||||||||||| |||||||| ||||||||||||| Sbjct: 790 atcctcaaagtggtaagcaaatgtcttatggcagaaatagtgaacaaaca 741 Score = 54.0 bits (27), Expect = 7e-04 Identities = 60/71 (84%) Strand = Plus / Minus Query: 102 tgtgcaaccatccattcatcaccattgttatatccgaaaagttcggcgactgagatgaag 161 |||||||||||||| || || |||||||| ||||||||||| || || || | ||||||| Sbjct: 1101 tgtgcaaccatccactcttctccattgttgtatccgaaaagctcagcaaccgcgatgaag 1042 Query: 162 aacgtcctcca 172 || || ||||| Sbjct: 1041 aaggttctcca 1031
>gb|AY664413.1| Zea mays cultivar B73 locus 9002, complete sequence Length = 317137 Score = 99.6 bits (50), Expect = 1e-17 Identities = 98/114 (85%) Strand = Plus / Plus Query: 415 cctcgaagtgatacgcaaatgtcttgtggcagaagtagtgaacaaacaataaggaatcct 474 |||| |||||||| | |||||| || ||||||||| |||||| || | || | ||||| Sbjct: 267496 cctcaaagtgatatggaaatgttttatggcagaagaggtgaacgaatagtaggccatcct 267555 Query: 475 ctttcatccatctggatatcttcttaagaagtgccttgtagtttttcatgtgct 528 |||||||||| |||||||||||||||||||| | |||||||||||||||||||| Sbjct: 267556 ctttcatccacctggatatcttcttaagaagcgacttgtagtttttcatgtgct 267609 Score = 61.9 bits (31), Expect = 3e-06 Identities = 34/35 (97%) Strand = Plus / Plus Query: 661 ctcaaacttgctgatgtctgctacaattatctcaa 695 |||||||||| |||||||||||||||||||||||| Sbjct: 267668 ctcaaacttgttgatgtctgctacaattatctcaa 267702
>emb|BX827265.1|CNS0A3QK Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS2ZG03 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1218 Score = 91.7 bits (46), Expect = 3e-15 Identities = 94/110 (85%) Strand = Plus / Minus Query: 353 tgctgatggcattgttcctccagtgaagaaataccttgtgatccaatcatcatcattctt 412 ||||||||||||| ||||||| ||||||| | ||||||||||| ||||| |||||| Sbjct: 831 tgctgatggcattattcctccgctgaagaagtttcttgtgatccagtcatcgtcattcac 772 Query: 413 gtcctcgaagtgatacgcaaatgtcttgtggcagaagtagtgaacaaaca 462 ||||| ||||| || ||||||||||| |||||||| ||||||||||||| Sbjct: 771 atcctcaaagtggtaagcaaatgtcttatggcagaaatagtgaacaaaca 722 Score = 54.0 bits (27), Expect = 7e-04 Identities = 60/71 (84%) Strand = Plus / Minus Query: 102 tgtgcaaccatccattcatcaccattgttatatccgaaaagttcggcgactgagatgaag 161 |||||||||||||| || || |||||||| ||||||||||| || || || | ||||||| Sbjct: 1082 tgtgcaaccatccactcttctccattgttgtatccgaaaagctcagcaaccgcgatgaag 1023 Query: 162 aacgtcctcca 172 || || ||||| Sbjct: 1022 aaggttctcca 1012
>ref|NM_119466.2| Arabidopsis thaliana (S)-coclaurine-N-methyltransferase/ S-adenosylmethionine-dependent methyltransferase/ cyclopropane-fatty-acyl-phospholipid synt> AT4G33120 mRNA, complete cds Length = 1315 Score = 83.8 bits (42), Expect = 8e-13 Identities = 93/110 (84%) Strand = Plus / Minus Query: 353 tgctgatggcattgttcctccagtgaagaaataccttgtgatccaatcatcatcattctt 412 ||||||||||||||||||||| ||||||| | ||||||||||| ||||| |||||| Sbjct: 851 tgctgatggcattgttcctccgctgaagaagtgtcttgtgatccagtcatcgtcattcac 792 Query: 413 gtcctcgaagtgatacgcaaatgtcttgtggcagaagtagtgaacaaaca 462 ||||| ||||| || ||| ||||||| ||||||| ||||||||||||| Sbjct: 791 atcctcaaagtggtaagcatatgtcttatggcagagatagtgaacaaaca 742
>gb|BT005878.1| Arabidopsis thaliana At4g33120 gene, complete cds Length = 1068 Score = 83.8 bits (42), Expect = 8e-13 Identities = 93/110 (84%) Strand = Plus / Minus Query: 353 tgctgatggcattgttcctccagtgaagaaataccttgtgatccaatcatcatcattctt 412 ||||||||||||||||||||| ||||||| | ||||||||||| ||||| |||||| Sbjct: 795 tgctgatggcattgttcctccgctgaagaagtgtcttgtgatccagtcatcgtcattcac 736 Query: 413 gtcctcgaagtgatacgcaaatgtcttgtggcagaagtagtgaacaaaca 462 ||||| ||||| || ||| ||||||| ||||||| ||||||||||||| Sbjct: 735 atcctcaaagtggtaagcatatgtcttatggcagagatagtgaacaaaca 686
>emb|AL161583.2|ATCHRIV79 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 79 Length = 199536 Score = 60.0 bits (30), Expect = 1e-05 Identities = 51/58 (87%) Strand = Plus / Plus Query: 353 tgctgatggcattgttcctccagtgaagaaataccttgtgatccaatcatcatcattc 410 ||||||||||||||||||||| ||||||| | ||||||||||| ||||| |||||| Sbjct: 4108 tgctgatggcattgttcctccgctgaagaagtgtcttgtgatccagtcatcgtcattc 4165 Score = 60.0 bits (30), Expect = 1e-05 Identities = 51/58 (87%) Strand = Plus / Plus Query: 353 tgctgatggcattgttcctccagtgaagaaataccttgtgatccaatcatcatcattc 410 ||||||||||||||||||||| ||||||| | ||||||||||| ||||| |||||| Sbjct: 1032 tgctgatggcattgttcctccgctgaagaagtgtcttgtgatccagtcatcgtcattc 1089 Score = 56.0 bits (28), Expect = 2e-04 Identities = 43/48 (89%) Strand = Plus / Plus Query: 415 cctcgaagtgatacgcaaatgtcttgtggcagaagtagtgaacaaaca 462 |||| ||||| || ||||||||||| |||||||| ||||||||||||| Sbjct: 1174 cctcaaagtggtaagcaaatgtcttatggcagaaatagtgaacaaaca 1221 Score = 54.0 bits (27), Expect = 7e-04 Identities = 60/71 (84%) Strand = Plus / Plus Query: 102 tgtgcaaccatccattcatcaccattgttatatccgaaaagttcggcgactgagatgaag 161 |||||||||||||| || || |||||||| ||||||||||| || || || | ||||||| Sbjct: 607 tgtgcaaccatccactcttctccattgttgtatccgaaaagctcagcaaccgcgatgaag 666 Query: 162 aacgtcctcca 172 || || ||||| Sbjct: 667 aaggttctcca 677
>emb|AL161582.2|ATCHRIV78 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 78 Length = 198669 Score = 60.0 bits (30), Expect = 1e-05 Identities = 51/58 (87%) Strand = Plus / Plus Query: 353 tgctgatggcattgttcctccagtgaagaaataccttgtgatccaatcatcatcattc 410 ||||||||||||||||||||| ||||||| | ||||||||||| ||||| |||||| Sbjct: 197777 tgctgatggcattgttcctccgctgaagaagtgtcttgtgatccagtcatcgtcattc 197834 Score = 60.0 bits (30), Expect = 1e-05 Identities = 51/58 (87%) Strand = Plus / Plus Query: 353 tgctgatggcattgttcctccagtgaagaaataccttgtgatccaatcatcatcattc 410 ||||||||||||||||||||| ||||||| | ||||||||||| ||||| |||||| Sbjct: 194701 tgctgatggcattgttcctccgctgaagaagtgtcttgtgatccagtcatcgtcattc 194758 Score = 56.0 bits (28), Expect = 2e-04 Identities = 43/48 (89%) Strand = Plus / Plus Query: 415 cctcgaagtgatacgcaaatgtcttgtggcagaagtagtgaacaaaca 462 |||| ||||| || ||||||||||| |||||||| ||||||||||||| Sbjct: 194843 cctcaaagtggtaagcaaatgtcttatggcagaaatagtgaacaaaca 194890 Score = 54.0 bits (27), Expect = 7e-04 Identities = 60/71 (84%) Strand = Plus / Plus Query: 102 tgtgcaaccatccattcatcaccattgttatatccgaaaagttcggcgactgagatgaag 161 |||||||||||||| || || |||||||| ||||||||||| || || || | ||||||| Sbjct: 194276 tgtgcaaccatccactcttctccattgttgtatccgaaaagctcagcaaccgcgatgaag 194335 Query: 162 aacgtcctcca 172 || || ||||| Sbjct: 194336 aaggttctcca 194346
>emb|AL035525.1|ATF4I10 Arabidopsis thaliana DNA chromosome 4, BAC clone F4I10 (ESSA project) Length = 111876 Score = 60.0 bits (30), Expect = 1e-05 Identities = 51/58 (87%) Strand = Plus / Plus Query: 353 tgctgatggcattgttcctccagtgaagaaataccttgtgatccaatcatcatcattc 410 ||||||||||||||||||||| ||||||| | ||||||||||| ||||| |||||| Sbjct: 50316 tgctgatggcattgttcctccgctgaagaagtgtcttgtgatccagtcatcgtcattc 50373 Score = 60.0 bits (30), Expect = 1e-05 Identities = 51/58 (87%) Strand = Plus / Plus Query: 353 tgctgatggcattgttcctccagtgaagaaataccttgtgatccaatcatcatcattc 410 ||||||||||||||||||||| ||||||| | ||||||||||| ||||| |||||| Sbjct: 47240 tgctgatggcattgttcctccgctgaagaagtgtcttgtgatccagtcatcgtcattc 47297 Score = 56.0 bits (28), Expect = 2e-04 Identities = 43/48 (89%) Strand = Plus / Plus Query: 415 cctcgaagtgatacgcaaatgtcttgtggcagaagtagtgaacaaaca 462 |||| ||||| || ||||||||||| |||||||| ||||||||||||| Sbjct: 47382 cctcaaagtggtaagcaaatgtcttatggcagaaatagtgaacaaaca 47429 Score = 54.0 bits (27), Expect = 7e-04 Identities = 60/71 (84%) Strand = Plus / Plus Query: 102 tgtgcaaccatccattcatcaccattgttatatccgaaaagttcggcgactgagatgaag 161 |||||||||||||| || || |||||||| ||||||||||| || || || | ||||||| Sbjct: 46815 tgtgcaaccatccactcttctccattgttgtatccgaaaagctcagcaaccgcgatgaag 46874 Query: 162 aacgtcctcca 172 || || ||||| Sbjct: 46875 aaggttctcca 46885
>dbj|AB061863.1| Coptis japonica cnmt mRNA for coclaurine N-methyltransferase, complete cds Length = 1274 Score = 48.1 bits (24), Expect = 0.044 Identities = 27/28 (96%) Strand = Plus / Minus Query: 109 ccatccattcatcaccattgttatatcc 136 |||||||||| ||||||||||||||||| Sbjct: 1048 ccatccattcttcaccattgttatatcc 1021
>ref|XM_950904.1| Neurospora crassa OR74A hypothetical protein (NCU01437.1) partial mRNA Length = 5097 Score = 46.1 bits (23), Expect = 0.17 Identities = 41/47 (87%) Strand = Plus / Minus Query: 336 aagtagagaaggaggtttgctgatggcattgttcctccagtgaagaa 382 ||||| |||||||| | || ||| ||||| ||||||||||||||||| Sbjct: 4805 aagtacagaaggagatctgatgagggcatggttcctccagtgaagaa 4759
>ref|XM_327875.1| Neurospora crassa OR74A hypothetical protein (NCU01437.1) partial mRNA Length = 5097 Score = 46.1 bits (23), Expect = 0.17 Identities = 41/47 (87%) Strand = Plus / Minus Query: 336 aagtagagaaggaggtttgctgatggcattgttcctccagtgaagaa 382 ||||| |||||||| | || ||| ||||| ||||||||||||||||| Sbjct: 4805 aagtacagaaggagatctgatgagggcatggttcctccagtgaagaa 4759
>emb|BX294023.1|NCB20D17 Neurospora crassa DNA linkage group V BAC clone B20D17 Length = 71593 Score = 46.1 bits (23), Expect = 0.17 Identities = 41/47 (87%) Strand = Plus / Plus Query: 336 aagtagagaaggaggtttgctgatggcattgttcctccagtgaagaa 382 ||||| |||||||| | || ||| ||||| ||||||||||||||||| Sbjct: 24358 aagtacagaaggagatctgatgagggcatggttcctccagtgaagaa 24404
>gb|AY332670.1| Sorex araneus specimen-voucher P55 cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial gene for mitochondrial product Length = 439 Score = 44.1 bits (22), Expect = 0.68 Identities = 22/22 (100%) Strand = Plus / Plus Query: 69 cagcagtacttctacttctttc 90 |||||||||||||||||||||| Sbjct: 288 cagcagtacttctacttctttc 309
>gb|AY332669.1| Sorex araneus specimen-voucher P54 cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial gene for mitochondrial product Length = 439 Score = 44.1 bits (22), Expect = 0.68 Identities = 22/22 (100%) Strand = Plus / Plus Query: 69 cagcagtacttctacttctttc 90 |||||||||||||||||||||| Sbjct: 288 cagcagtacttctacttctttc 309
>gb|AC146122.2| Pan troglodytes BAC clone RP43-23C4 from 7, complete sequence Length = 143388 Score = 44.1 bits (22), Expect = 0.68 Identities = 22/22 (100%) Strand = Plus / Minus Query: 541 cattacaaacactcctttacct 562 |||||||||||||||||||||| Sbjct: 118187 cattacaaacactcctttacct 118166
>gb|AC002384.1| Homo sapiens BAC clone CTB-133P21 from 7, complete sequence Length = 69248 Score = 44.1 bits (22), Expect = 0.68 Identities = 22/22 (100%) Strand = Plus / Minus Query: 541 cattacaaacactcctttacct 562 |||||||||||||||||||||| Sbjct: 24396 cattacaaacactcctttacct 24375
>gb|AY594075.1| Plethodontohyla brevipes voucher FGMV2002-193 16S ribosomal RNA gene, partial sequence; mitochondrial Length = 610 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 272 actagttctagcataatgtgt 292 ||||||||||||||||||||| Sbjct: 436 actagttctagcataatgtgt 416
>gb|AY594071.1| Plethodontohyla ocellata voucher MRSN A2665 16S ribosomal RNA gene, partial sequence; mitochondrial Length = 595 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 272 actagttctagcataatgtgt 292 ||||||||||||||||||||| Sbjct: 435 actagttctagcataatgtgt 415
>gb|AY594070.1| Plethodontohyla ocellata voucher MRSN A2589 16S ribosomal RNA gene, partial sequence; mitochondrial Length = 610 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 272 actagttctagcataatgtgt 292 ||||||||||||||||||||| Sbjct: 436 actagttctagcataatgtgt 416
>ref|XM_324045.1| Neurospora crassa OR74A predicted protein (NCU04689.1) partial mRNA Length = 696 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 273 ctagttctagcataatgtgtg 293 ||||||||||||||||||||| Sbjct: 524 ctagttctagcataatgtgtg 504
>ref|XM_955034.1| Neurospora crassa OR74A hypothetical protein (NCU04689.1) partial mRNA Length = 696 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 273 ctagttctagcataatgtgtg 293 ||||||||||||||||||||| Sbjct: 524 ctagttctagcataatgtgtg 504
>gb|AC131329.13| Mus musculus chromosome 13, clone RP23-474B11, complete sequence Length = 172830 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 561 cttaaggaattattataaggg 581 ||||||||||||||||||||| Sbjct: 147049 cttaaggaattattataaggg 147069
>gb|AC147322.2| Pan troglodytes BAC clone RP43-41H22 from 7, complete sequence Length = 174281 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 211 tattctcaaagattggcctta 231 ||||||||||||||||||||| Sbjct: 51305 tattctcaaagattggcctta 51285
>gb|AC159208.2| Mus musculus BAC clone RP23-152K15 from chromosome 13, complete sequence Length = 195714 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 561 cttaaggaattattataaggg 581 ||||||||||||||||||||| Sbjct: 187704 cttaaggaattattataaggg 187684
>gb|AC147316.4| Pan troglodytes BAC clone RP43-49H2 from chromosome 7, complete sequence Length = 209609 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 211 tattctcaaagattggcctta 231 ||||||||||||||||||||| Sbjct: 131081 tattctcaaagattggcctta 131061
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 376 tgaagaaataccttgtgatcc 396 ||||||||||||||||||||| Sbjct: 4552324 tgaagaaataccttgtgatcc 4552304
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 376 tgaagaaataccttgtgatcc 396 ||||||||||||||||||||| Sbjct: 4552305 tgaagaaataccttgtgatcc 4552285
>emb|AL928749.4|CNS08CBM Oryza sativa chromosome 12, . BAC OSJNBa0002O20 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 129155 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 376 tgaagaaataccttgtgatcc 396 ||||||||||||||||||||| Sbjct: 52454 tgaagaaataccttgtgatcc 52474
>gb|AC004707.1|AC004707 Homo sapiens chromosome 17, clone hRPC.117_B_12, complete sequence Length = 123585 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 106 caaccatccattcatcaccat 126 ||||||||||||||||||||| Sbjct: 21730 caaccatccattcatcaccat 21710 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7,556,483 Number of Sequences: 3902068 Number of extensions: 7556483 Number of successful extensions: 135856 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 35 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 135632 Number of HSP's gapped (non-prelim): 221 length of query: 776 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 753 effective length of database: 17,143,297,704 effective search space: 12908903171112 effective search space used: 12908903171112 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 21 (42.1 bits)