>YIG4_YEAST (P40516) Hypothetical 28.7 kDa protein in RNR3-ARC15 intergenic|
           region
          Length = 257

 Score = 75.9 bits (185), Expect = 1e-13
 Identities = 52/154 (33%), Positives = 84/154 (54%), Gaps = 6/154 (3%)
 Frame = -3

Query: 676 LTGTDYSEGAIELARNLAARDGFTT-ISFLVDDVLQTKLDR-KFKIITDKGTLDAI---G 512
           L G DYSE +++LA N+A   G    ISF   D+        K+ I+ DKGTLDAI   G
Sbjct: 120 LVGIDYSEESVKLASNIAEATGVDNFISFQQADIFSGDWKPGKYDIVLDKGTLDAISLSG 179

Query: 511 LHPDGRAKRV-MYWESVSNLVEPGGLVVITSCNHTKDELLQEVEEFGMQKFGKEDAERGA 335
           +  +G+   V +Y   V  +++  G+ +ITSCN T+DEL++ +E                
Sbjct: 180 MKINGKLDVVDVYAGVVERILKKDGIFLITSCNFTQDELVKIIE---------------- 223

Query: 334 SDSHQIFRYLDHVQTYPTIMFGGIEGSQVCTVAF 233
           +D+ ++++ +     YP   FGG++G+ +C+VAF
Sbjct: 224 TDNLKMWKTI----KYPVFQFGGVQGATICSVAF 253

>YHRE_SCHPO (Q9P7Z3) Hypothetical protein C839.14c in chromosome II|
          Length = 238

 Score = 65.5 bits (158), Expect = 2e-10
 Identities = 52/156 (33%), Positives = 74/156 (47%), Gaps = 7/156 (4%)
 Frame = -3

Query: 676 LTGTDYSEGAIELARNLAARDGFTT-ISFLVDDVLQTK--LDRKFKIITDKGTLDAIGLH 506
           L G DYSE AI LA+N+A    F+  + F   D+++      + + +I DKGT DAI L 
Sbjct: 96  LVGVDYSEAAIVLAKNIARHRQFSDKVKFQQLDIIKDSKFCSKDWDLILDKGTFDAISLS 155

Query: 505 P---DGRAKRVMYWESVSNLVEPGGLVVITSCNHTKDELLQEVEEFGMQKFGKEDAERGA 335
               DGR    +Y + V  ++ P G+ +ITSCN T    +QE+EE    +F K       
Sbjct: 156 GELLDGRPLNSVYVDRVRGMLSPNGIFLITSCNWT----IQELEE----RFTKNG----- 202

Query: 334 SDSHQIFRYLDH-VQTYPTIMFGGIEGSQVCTVAFQ 230
                   ++ H     P   F G  GS    +AFQ
Sbjct: 203 --------FIVHSTVPVPVFEFQGSTGSSTSVIAFQ 230

>UBIG_COXBU (Q820B5) 3-demethylubiquinone-9 3-methyltransferase (EC 2.1.1.64)|
           (3,4-dihydroxy-5-hexaprenylbenzoate methyltransferase)
           (DHHB methyltransferase)
          Length = 234

 Score = 36.6 bits (83), Expect = 0.078
 Identities = 32/100 (32%), Positives = 58/100 (58%), Gaps = 1/100 (1%)
 Frame = -3

Query: 712 LLQALAKQGFSDLTGTDYSEGAIELARNLAARDGFTTISFLVDDV-LQTKLDRKFKIITD 536
           L +ALAK G + +TG D SE  I++A+N A +     I++   D+ + TK  ++F IIT 
Sbjct: 65  LSEALAKHG-AIVTGVDMSESLIDVAKNHAEQQQL-NINYQCQDIEILTKDAQRFDIITC 122

Query: 535 KGTLDAIGLHPDGRAKRVMYWESVSNLVEPGGLVVITSCN 416
              L+ +   PD   +R++  ++ + L++PGG +  ++ N
Sbjct: 123 MELLEHV---PD--PQRMI--KNCAALIKPGGKLFFSTIN 155

>K0859_MOUSE (Q91YR5) Protein KIAA0859|
          Length = 698

 Score = 35.4 bits (80), Expect = 0.17
 Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
 Frame = -3

Query: 712 LLQALAKQGFSDLTGTDYSEGAIELARNLAARDGFTT--ISFLVDDVLQTKL-DRKFKII 542
           L + L   G+ D+   D SE  I   + +  R+G     +SFL  D+ Q +  D  F+++
Sbjct: 62  LSEQLYDVGYQDIVNIDISEVVI---KQMKERNGSRRPHMSFLKMDMTQLEFPDATFQVV 118

Query: 541 TDKGTLDAI 515
            DKGTLDA+
Sbjct: 119 LDKGTLDAV 127

>K0859_HUMAN (Q8N6R0) Protein KIAA0859|
          Length = 699

 Score = 35.0 bits (79), Expect = 0.23
 Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
 Frame = -3

Query: 712 LLQALAKQGFSDLTGTDYSEGAIELARNLAARDGFTTISFLVDDVLQTKL-DRKFKIITD 536
           L + L   G+ D+   D SE  I+  +   A      +SFL  D+ Q +  D  F+++ D
Sbjct: 62  LSEQLYDVGYRDIVNIDISEVVIKQMKECNATRR-PQMSFLKMDMTQMEFPDASFQVVLD 120

Query: 535 KGTLDAI 515
           KGTLDA+
Sbjct: 121 KGTLDAV 127

>ALF_STRGB (Q9ZEM7) Fructose-bisphosphate aldolase (EC 4.1.2.13) (FBP|
           aldolase)
          Length = 340

 Score = 33.5 bits (75), Expect = 0.66
 Identities = 27/98 (27%), Positives = 46/98 (46%)
 Frame = -3

Query: 646 IELARNLAARDGFTTISFLVDDVLQTKLDRKFKIITDKGTLDAIGLHPDGRAKRVMYWES 467
           +E+       DG   +S  ++D L T +D   +      T +A+GL   GR      + +
Sbjct: 160 VEITPTGGEEDG---VSHEINDSLYTTVDDAIR------TAEALGLGEKGRYLLAASFGN 210

Query: 466 VSNLVEPGGLVVITSCNHTKDELLQEVEEFGMQKFGKE 353
           V  + +PG +V+       + ELL+E+ E    +FGKE
Sbjct: 211 VHGVYKPGNVVL-------RPELLKELNEGVAARFGKE 241

>VG12_BPP22 (P03006) Replicative DNA helicase (EC 3.6.1.-) (Replication protein|
           gp12)
          Length = 458

 Score = 30.8 bits (68), Expect = 4.3
 Identities = 36/116 (31%), Positives = 49/116 (42%), Gaps = 7/116 (6%)
 Frame = -3

Query: 670 GTDYSEGAIELAR------NLAARDGFTTISFLVDDVLQTKLDRKFKIITDKGTLDAIGL 509
           G +Y+   +  AR      NL    G    S+    VLQ  LD   + I++ GTLDA G 
Sbjct: 66  GDEYATAVMMTARSCPSAANLKGYAGMVADSYQRRQVLQL-LDEMREPISN-GTLDASGR 123

Query: 508 HPDGRAKRVMYWESVSNLVEPGGL-VVITSCNHTKDELLQEVEEFGMQKFGKEDAE 344
             D   KR+       N V+P  L  +I     T D  L+  EE    K G E+ +
Sbjct: 124 AMDELVKRLSSIRKPRNEVKPVRLGEIINDYTDTLDRRLRNGEESDTLKTGIEELD 179

>ALF_STRCO (Q9X8R6) Fructose-bisphosphate aldolase (EC 4.1.2.13)|
          Length = 343

 Score = 30.4 bits (67), Expect = 5.6
 Identities = 25/97 (25%), Positives = 46/97 (47%)
 Frame = -3

Query: 646 IELARNLAARDGFTTISFLVDDVLQTKLDRKFKIITDKGTLDAIGLHPDGRAKRVMYWES 467
           +E+       DG   +S  ++D L T +D   +      T++A+GL   GR      + +
Sbjct: 160 VEITPTGGEEDG---VSHEINDSLYTTVDDAVR------TVEALGLGEKGRYLLAASFGN 210

Query: 466 VSNLVEPGGLVVITSCNHTKDELLQEVEEFGMQKFGK 356
           V  + +PG +V+       + ELL+E+ E    K+G+
Sbjct: 211 VHGVYKPGNVVL-------RPELLKELNEGIASKYGQ 240


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 104,158,161
Number of Sequences: 219361
Number of extensions: 2159501
Number of successful extensions: 5180
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5046
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5174
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7252940416
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)