ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags35j23
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.002
2dbj|AK063403.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.002
3emb|AL731599.2|OSJN00244 Oryza sativa genomic DNA, chromosome 4,... 50 0.002
4gb|AC151912.1| Pan troglodytes chromosome X clone PTB-093M21 map... 46 0.025
5emb|CR385039.8| Zebrafish DNA sequence from clone DKEYP-31D1 in ... 46 0.025
6ref|XM_633867.1| Dictyostelium discoideum hypothetical protein (... 40 1.6
7dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 1.6
8dbj|AP004728.3| Oryza sativa (japonica cultivar-group) genomic D... 40 1.6
9ref|XM_631918.1| Dictyostelium discoideum hypothetical protein (... 38 6.2
10gb|AF289077.4| Homo sapiens chromosome 8 clone CTD-2003M15 map p... 38 6.2
11ref|XM_735887.1| Plasmodium chabaudi chabaudi FHA domain protein... 38 6.2
12emb|AL360173.15| Human DNA sequence from clone RP11-75F12 on chr... 38 6.2
13emb|BX897667.19| Zebrafish DNA sequence from clone CH211-278K1 i... 38 6.2
14emb|BX571688.3| Zebrafish DNA sequence from clone DKEY-200H23, c... 38 6.2
15gb|AC012467.9| Homo sapiens chr3 BAC RP11-884K10 (Roswell Park C... 38 6.2
16gb|AC025800.10| Homo sapiens chromosome 8, clone RP11-600N23, co... 38 6.2
17gb|AC009707.9| Homo sapiens chromosome 8, clone RP11-315I17, com... 38 6.2
18gb|AC084222.6| Homo sapiens chromosome 8, clone RP11-79I19, comp... 38 6.2
19gb|AC105383.3| Homo sapiens BAC clone RP11-9G1 from 4, complete ... 38 6.2
20gb|AC026029.8| Homo sapiens BAC clone RP11-16G16 from 4, complet... 38 6.2
21dbj|BA000003.2| Buchnera aphidicola str. APS (Acyrthosiphon pisu... 38 6.2
22gb|AF082992.1|AF082992 Molgula occulta ForkHead 1 (MoccFH1) mRNA... 38 6.2
23emb|AL928843.9| Zebrafish DNA sequence from clone DKEY-7P8 in li... 38 6.2

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 50.1 bits (25), Expect = 0.002
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                             
Query: 57       ctatagattaaaggaaatacaacatctta 85
                |||||||||||||||| ||||||||||||
Sbjct: 19143705 ctatagattaaaggaagtacaacatctta 19143677



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>dbj|AK063403.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-115-A05, full
            insert sequence
          Length = 2337

 Score = 50.1 bits (25), Expect = 0.002
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                         
Query: 57   ctatagattaaaggaaatacaacatctta 85
            |||||||||||||||| ||||||||||||
Sbjct: 2277 ctatagattaaaggaagtacaacatctta 2249



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>emb|AL731599.2|OSJN00244 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0053B21,
             complete sequence
          Length = 151936

 Score = 50.1 bits (25), Expect = 0.002
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                          
Query: 57    ctatagattaaaggaaatacaacatctta 85
             |||||||||||||||| ||||||||||||
Sbjct: 77225 ctatagattaaaggaagtacaacatctta 77197



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>gb|AC151912.1| Pan troglodytes chromosome X clone PTB-093M21 map human ortholog q26.2,
              complete sequence
          Length = 180904

 Score = 46.1 bits (23), Expect = 0.025
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                         
Query: 56     gctatagattaaaggaaatacaacatc 82
              |||||||||| ||||||||||||||||
Sbjct: 148431 gctatagatttaaggaaatacaacatc 148457



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>emb|CR385039.8| Zebrafish DNA sequence from clone DKEYP-31D1 in linkage group 24,
             complete sequence
          Length = 166302

 Score = 46.1 bits (23), Expect = 0.025
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 88    taaatttggtacattaataattt 110
             |||||||||||||||||||||||
Sbjct: 51137 taaatttggtacattaataattt 51115



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>ref|XM_633867.1| Dictyostelium discoideum hypothetical protein (DDB0185622), partial
           mRNA
          Length = 882

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 79  catcttaggtaaatttggta 98
           ||||||||||||||||||||
Sbjct: 792 catcttaggtaaatttggta 811



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 58       tatagattaaaggaaataca 77
                ||||||||||||||||||||
Sbjct: 16535510 tatagattaaaggaaataca 16535529



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>dbj|AP004728.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0583E12
          Length = 152449

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 58    tatagattaaaggaaataca 77
             ||||||||||||||||||||
Sbjct: 31490 tatagattaaaggaaataca 31509



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>ref|XM_631918.1| Dictyostelium discoideum hypothetical protein (DDB0187593), partial
           mRNA
          Length = 1716

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 59  atagattaaaggaaatacaacat 81
           ||||||||||||||||| |||||
Sbjct: 137 atagattaaaggaaatagaacat 159



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>gb|AF289077.4| Homo sapiens chromosome 8 clone CTD-2003M15 map p23.2, complete
             sequence
          Length = 145170

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 62    gattaaaggaaatacaacatctt 84
             ||||||| |||||||||||||||
Sbjct: 80227 gattaaatgaaatacaacatctt 80205



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>ref|XM_735887.1| Plasmodium chabaudi chabaudi FHA domain protein (PC301166.00.0)
           partial mRNA
          Length = 1026

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 87  gtaaatttggtacattaat 105
           |||||||||||||||||||
Sbjct: 470 gtaaatttggtacattaat 488



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>emb|AL360173.15| Human DNA sequence from clone RP11-75F12 on chromosome Xq21.31-22.2,
             complete sequence
          Length = 105507

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 71    aaatacaacatcttaggtaaatt 93
             ||||||||||||| |||||||||
Sbjct: 31338 aaatacaacatctgaggtaaatt 31316



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>emb|BX897667.19| Zebrafish DNA sequence from clone CH211-278K1 in linkage group 13,
             complete sequence
          Length = 149783

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 88    taaatttggtacattaataattt 110
             |||||||||||||| ||||||||
Sbjct: 50932 taaatttggtacatcaataattt 50954



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>emb|BX571688.3| Zebrafish DNA sequence from clone DKEY-200H23, complete sequence
          Length = 181466

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 88     taaatttggtacattaataattt 110
              |||||||||||||| ||||||||
Sbjct: 118417 taaatttggtacatcaataattt 118439



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>gb|AC012467.9| Homo sapiens chr3 BAC RP11-884K10 (Roswell Park Cancer Institute Human
              BAC Library) complete sequence
          Length = 177072

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 87     gtaaatttggtacattaat 105
              |||||||||||||||||||
Sbjct: 118200 gtaaatttggtacattaat 118218



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>gb|AC025800.10| Homo sapiens chromosome 8, clone RP11-600N23, complete sequence
          Length = 185359

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 60     tagattaaaggaaatacaa 78
              |||||||||||||||||||
Sbjct: 135989 tagattaaaggaaatacaa 136007



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>gb|AC009707.9| Homo sapiens chromosome 8, clone RP11-315I17, complete sequence
          Length = 176193

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 62     gattaaaggaaatacaacatctt 84
              ||||||| |||||||||||||||
Sbjct: 110078 gattaaatgaaatacaacatctt 110056



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>gb|AC084222.6| Homo sapiens chromosome 8, clone RP11-79I19, complete sequence
          Length = 157678

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 62    gattaaaggaaatacaacatctt 84
             ||||||| |||||||||||||||
Sbjct: 18353 gattaaatgaaatacaacatctt 18375



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>gb|AC105383.3| Homo sapiens BAC clone RP11-9G1 from 4, complete sequence
          Length = 173956

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 26    atcaagttcaacattatat 44
             |||||||||||||||||||
Sbjct: 22413 atcaagttcaacattatat 22395



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>gb|AC026029.8| Homo sapiens BAC clone RP11-16G16 from 4, complete sequence
          Length = 173067

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 89     aaatttggtacattaataa 107
              |||||||||||||||||||
Sbjct: 153480 aaatttggtacattaataa 153498



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>dbj|BA000003.2| Buchnera aphidicola str. APS (Acyrthosiphon pisum) genomic DNA, complete
              sequence
          Length = 640681

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 24     tcatcaagttcaacattatataa 46
              ||||||||||||| |||||||||
Sbjct: 467468 tcatcaagttcaatattatataa 467490



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>gb|AF082992.1|AF082992 Molgula occulta ForkHead 1 (MoccFH1) mRNA, complete cds
          Length = 2201

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 24   tcatcaagttcaacattat 42
            |||||||||||||||||||
Sbjct: 1354 tcatcaagttcaacattat 1372



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>emb|AL928843.9| Zebrafish DNA sequence from clone DKEY-7P8 in linkage group 7, complete
              sequence
          Length = 179577

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 88     taaatttggtacattaataattt 110
              |||||||||||| ||||||||||
Sbjct: 105895 taaatttggtactttaataattt 105873


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,187,923
Number of Sequences: 3902068
Number of extensions: 1187923
Number of successful extensions: 84419
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 84328
Number of HSP's gapped (non-prelim): 91
length of query: 131
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 110
effective length of database: 17,151,101,840
effective search space: 1886621202400
effective search space used: 1886621202400
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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