| Clone Name | rbags35j23 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 50.1 bits (25), Expect = 0.002 Identities = 28/29 (96%) Strand = Plus / Minus Query: 57 ctatagattaaaggaaatacaacatctta 85 |||||||||||||||| |||||||||||| Sbjct: 19143705 ctatagattaaaggaagtacaacatctta 19143677
>dbj|AK063403.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-115-A05, full insert sequence Length = 2337 Score = 50.1 bits (25), Expect = 0.002 Identities = 28/29 (96%) Strand = Plus / Minus Query: 57 ctatagattaaaggaaatacaacatctta 85 |||||||||||||||| |||||||||||| Sbjct: 2277 ctatagattaaaggaagtacaacatctta 2249
>emb|AL731599.2|OSJN00244 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0053B21, complete sequence Length = 151936 Score = 50.1 bits (25), Expect = 0.002 Identities = 28/29 (96%) Strand = Plus / Minus Query: 57 ctatagattaaaggaaatacaacatctta 85 |||||||||||||||| |||||||||||| Sbjct: 77225 ctatagattaaaggaagtacaacatctta 77197
>gb|AC151912.1| Pan troglodytes chromosome X clone PTB-093M21 map human ortholog q26.2, complete sequence Length = 180904 Score = 46.1 bits (23), Expect = 0.025 Identities = 26/27 (96%) Strand = Plus / Plus Query: 56 gctatagattaaaggaaatacaacatc 82 |||||||||| |||||||||||||||| Sbjct: 148431 gctatagatttaaggaaatacaacatc 148457
>emb|CR385039.8| Zebrafish DNA sequence from clone DKEYP-31D1 in linkage group 24, complete sequence Length = 166302 Score = 46.1 bits (23), Expect = 0.025 Identities = 23/23 (100%) Strand = Plus / Minus Query: 88 taaatttggtacattaataattt 110 ||||||||||||||||||||||| Sbjct: 51137 taaatttggtacattaataattt 51115
>ref|XM_633867.1| Dictyostelium discoideum hypothetical protein (DDB0185622), partial mRNA Length = 882 Score = 40.1 bits (20), Expect = 1.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 79 catcttaggtaaatttggta 98 |||||||||||||||||||| Sbjct: 792 catcttaggtaaatttggta 811
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 1.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 58 tatagattaaaggaaataca 77 |||||||||||||||||||| Sbjct: 16535510 tatagattaaaggaaataca 16535529
>dbj|AP004728.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0583E12 Length = 152449 Score = 40.1 bits (20), Expect = 1.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 58 tatagattaaaggaaataca 77 |||||||||||||||||||| Sbjct: 31490 tatagattaaaggaaataca 31509
>ref|XM_631918.1| Dictyostelium discoideum hypothetical protein (DDB0187593), partial mRNA Length = 1716 Score = 38.2 bits (19), Expect = 6.2 Identities = 22/23 (95%) Strand = Plus / Plus Query: 59 atagattaaaggaaatacaacat 81 ||||||||||||||||| ||||| Sbjct: 137 atagattaaaggaaatagaacat 159
>gb|AF289077.4| Homo sapiens chromosome 8 clone CTD-2003M15 map p23.2, complete sequence Length = 145170 Score = 38.2 bits (19), Expect = 6.2 Identities = 22/23 (95%) Strand = Plus / Minus Query: 62 gattaaaggaaatacaacatctt 84 ||||||| ||||||||||||||| Sbjct: 80227 gattaaatgaaatacaacatctt 80205
>ref|XM_735887.1| Plasmodium chabaudi chabaudi FHA domain protein (PC301166.00.0) partial mRNA Length = 1026 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 87 gtaaatttggtacattaat 105 ||||||||||||||||||| Sbjct: 470 gtaaatttggtacattaat 488
>emb|AL360173.15| Human DNA sequence from clone RP11-75F12 on chromosome Xq21.31-22.2, complete sequence Length = 105507 Score = 38.2 bits (19), Expect = 6.2 Identities = 22/23 (95%) Strand = Plus / Minus Query: 71 aaatacaacatcttaggtaaatt 93 ||||||||||||| ||||||||| Sbjct: 31338 aaatacaacatctgaggtaaatt 31316
>emb|BX897667.19| Zebrafish DNA sequence from clone CH211-278K1 in linkage group 13, complete sequence Length = 149783 Score = 38.2 bits (19), Expect = 6.2 Identities = 22/23 (95%) Strand = Plus / Plus Query: 88 taaatttggtacattaataattt 110 |||||||||||||| |||||||| Sbjct: 50932 taaatttggtacatcaataattt 50954
>emb|BX571688.3| Zebrafish DNA sequence from clone DKEY-200H23, complete sequence Length = 181466 Score = 38.2 bits (19), Expect = 6.2 Identities = 22/23 (95%) Strand = Plus / Plus Query: 88 taaatttggtacattaataattt 110 |||||||||||||| |||||||| Sbjct: 118417 taaatttggtacatcaataattt 118439
>gb|AC012467.9| Homo sapiens chr3 BAC RP11-884K10 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 177072 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 87 gtaaatttggtacattaat 105 ||||||||||||||||||| Sbjct: 118200 gtaaatttggtacattaat 118218
>gb|AC025800.10| Homo sapiens chromosome 8, clone RP11-600N23, complete sequence Length = 185359 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 60 tagattaaaggaaatacaa 78 ||||||||||||||||||| Sbjct: 135989 tagattaaaggaaatacaa 136007
>gb|AC009707.9| Homo sapiens chromosome 8, clone RP11-315I17, complete sequence Length = 176193 Score = 38.2 bits (19), Expect = 6.2 Identities = 22/23 (95%) Strand = Plus / Minus Query: 62 gattaaaggaaatacaacatctt 84 ||||||| ||||||||||||||| Sbjct: 110078 gattaaatgaaatacaacatctt 110056
>gb|AC084222.6| Homo sapiens chromosome 8, clone RP11-79I19, complete sequence Length = 157678 Score = 38.2 bits (19), Expect = 6.2 Identities = 22/23 (95%) Strand = Plus / Plus Query: 62 gattaaaggaaatacaacatctt 84 ||||||| ||||||||||||||| Sbjct: 18353 gattaaatgaaatacaacatctt 18375
>gb|AC105383.3| Homo sapiens BAC clone RP11-9G1 from 4, complete sequence Length = 173956 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 26 atcaagttcaacattatat 44 ||||||||||||||||||| Sbjct: 22413 atcaagttcaacattatat 22395
>gb|AC026029.8| Homo sapiens BAC clone RP11-16G16 from 4, complete sequence Length = 173067 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 89 aaatttggtacattaataa 107 ||||||||||||||||||| Sbjct: 153480 aaatttggtacattaataa 153498
>dbj|BA000003.2| Buchnera aphidicola str. APS (Acyrthosiphon pisum) genomic DNA, complete sequence Length = 640681 Score = 38.2 bits (19), Expect = 6.2 Identities = 22/23 (95%) Strand = Plus / Plus Query: 24 tcatcaagttcaacattatataa 46 ||||||||||||| ||||||||| Sbjct: 467468 tcatcaagttcaatattatataa 467490
>gb|AF082992.1|AF082992 Molgula occulta ForkHead 1 (MoccFH1) mRNA, complete cds Length = 2201 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 24 tcatcaagttcaacattat 42 ||||||||||||||||||| Sbjct: 1354 tcatcaagttcaacattat 1372
>emb|AL928843.9| Zebrafish DNA sequence from clone DKEY-7P8 in linkage group 7, complete sequence Length = 179577 Score = 38.2 bits (19), Expect = 6.2 Identities = 22/23 (95%) Strand = Plus / Minus Query: 88 taaatttggtacattaataattt 110 |||||||||||| |||||||||| Sbjct: 105895 taaatttggtactttaataattt 105873 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,187,923 Number of Sequences: 3902068 Number of extensions: 1187923 Number of successful extensions: 84419 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 23 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 84328 Number of HSP's gapped (non-prelim): 91 length of query: 131 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 110 effective length of database: 17,151,101,840 effective search space: 1886621202400 effective search space used: 1886621202400 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)