ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags35j22
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_475863.1| Oryza sativa (japonica cultivar-group), predic... 115 2e-22
2gb|AC129717.3| Oryza sativa (japonica cultivar-group) chromosome... 74 7e-10
3gb|AC135925.2| Oryza sativa (japonica cultivar-group) chromosome... 74 7e-10
4dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 74 7e-10
5gb|AY216939.1| Plasmodium vivax strain Belem YAC1H14-like sequence 46 0.15
6gb|AY216938.1| Plasmodium vivax strain IndiaVII YAC1H14-like seq... 46 0.15
7gb|AY216937.1| Plasmodium vivax strain Salvador I YAC1H14-like s... 46 0.15
8gb|AY216936.1| Plasmodium vivax strain Thai-NYU YAC1H14-like seq... 46 0.15
9gb|AY003872.1| Plasmodium vivax YAC 1H14, complete sequence 46 0.15
10ref|NM_112724.3| Arabidopsis thaliana EMB1865 AT3G18390 (EMB1865... 44 0.59
11gb|AY063908.1| Arabidopsis thaliana unknown protein (At3g18390) ... 44 0.59
12dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete g... 42 2.3
13dbj|AP004543.1| Lotus japonicus genomic DNA, chromosome 1, clone... 42 2.3
14gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome 40 9.2
15gb|BC055663.1| Danio rerio hypothetical protein LOC402830, mRNA ... 40 9.2
16ref|XM_993198.1| PREDICTED: Mus musculus polymerase (RNA) III (D... 40 9.2
17ref|XM_993170.1| PREDICTED: Mus musculus polymerase (RNA) III (D... 40 9.2
18ref|XM_922321.2| PREDICTED: Mus musculus polymerase (RNA) III (D... 40 9.2
19ref|XM_912306.2| PREDICTED: Mus musculus polymerase (RNA) III (D... 40 9.2
20ref|XM_898660.2| PREDICTED: Mus musculus polymerase (RNA) III (D... 40 9.2
21ref|XM_283153.6| PREDICTED: Mus musculus polymerase (RNA) III (D... 40 9.2
22gb|AC098886.4| Mus musculus BAC clone RP23-122M21 from 4, comple... 40 9.2
23gb|AF181898.6| Homo sapiens chromosome 8 clone GS1-402E12 map p2... 40 9.2
24emb|Z50113.1|SPAC31A2 S.pombe chromosome I cosmid c31A2 40 9.2
25emb|X16880.1|GGLAMB2 Chicken mRNA for lamin B2 40 9.2
26emb|BX842576.1| Mycobacterium tuberculosis H37Rv complete genome... 40 9.2
27emb|BX248586.1| Blochmannia floridanus complete genome; segment 3/3 40 9.2
28emb|BX248338.1| Mycobacterium bovis subsp. bovis AF2122/97 compl... 40 9.2
29gb|BC043139.1| Mus musculus UTP11-like, U3 small nucleolar ribon... 40 9.2
30gb|DQ388013.1| Fenneropenaeus merguiensis clone TAA30 microsatel... 40 9.2
31gb|AC005010.2| Homo sapiens BAC clone GS1-110L19 from 8, complet... 40 9.2
32ref|XM_692330.1| PREDICTED: Danio rerio hypothetical protein LOC... 40 9.2
33gb|AC090119.1|AC090119 Takifugu rubripes clone 242D16, complete ... 40 9.2
34dbj|AK009876.1| Mus musculus adult male tongue cDNA, RIKEN full-... 40 9.2
35gb|AF403769.1|AF403769 Oedaleus asiaticus entomopoxvirus spheroi... 40 9.2
36ref|NM_001018323.1| Schizosaccharomyces pombe 972h- hypothetical... 40 9.2
37dbj|AK049789.1| Mus musculus 12 days embryo spinal cord cDNA, RI... 40 9.2
38dbj|AK009045.1| Mus musculus adult male tongue cDNA, RIKEN full-... 40 9.2
39ref|NM_205285.1| Gallus gallus lamin B2 (LMNB2), mRNA 40 9.2
40gb|AC154771.2| Mus musculus BAC clone RP24-448F8 from 13, comple... 40 9.2
41gb|BC066818.1| Mus musculus polymerase (RNA) III (DNA directed) ... 40 9.2
42gb|AD000018.1|MSGY151 Mycobacterium tuberculosis sequence from c... 40 9.2
43gb|AC113982.8| Mus musculus chromosome 1, clone RP24-78E16, comp... 40 9.2
44gb|AC160111.2| Mus musculus BAC clone RP24-144L16 from chromosom... 40 9.2
45emb|AL606907.9| Mouse DNA sequence from clone RP23-230F2 on chro... 40 9.2 
>ref|XM_475863.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2397

 Score =  115 bits (58), Expect = 2e-22
 Identities = 125/148 (84%)
 Strand = Plus / Minus

                                                                        
Query: 526  cctccatgcccaaatcacgcttcatctgcttcatattgatttccaattggtctatatgct 585
            |||| |||||||||||   |||||||||| | |||||| |||||| ||   |||||||||
Sbjct: 2221 cctcaatgcccaaatccaacttcatctgccttatattgttttccagttcagctatatgct 2162

                                                                        
Query: 586  ggctgagggcctcatggcgttgcattgcaactgcacgtttcaacgccttancctttgtta 645
            | |||||||||||||| || ||||||||||| ||||| ||||| |||||  | |||||||
Sbjct: 2161 gactgagggcctcatgacgctgcattgcaacagcacgcttcaatgcctttgcttttgtta 2102

                                        
Query: 646  aganatttctaggccttatgttaatagg 673
            | | ||| ||||||||||||||||||||
Sbjct: 2101 aaagattcctaggccttatgttaatagg 2074
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>gb|AC129717.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0079H23, complete sequence
          Length = 191765

 Score = 73.8 bits (37), Expect = 7e-10
 Identities = 68/79 (86%)
 Strand = Plus / Plus

                                                                         
Query: 595   cctcatggcgttgcattgcaactgcacgtttcaacgccttancctttgttaaganatttc 654
             ||||||| || ||||||||||| ||||| ||||| |||||  | |||||||| | ||| |
Sbjct: 97198 cctcatgacgctgcattgcaacagcacgcttcaatgcctttgcttttgttaaaagattcc 97257

                                
Query: 655   taggccttatgttaatagg 673
             |||||||||||||||||||
Sbjct: 97258 taggccttatgttaatagg 97276
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>gb|AC135925.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0560C03,
              complete sequence
          Length = 177861

 Score = 73.8 bits (37), Expect = 7e-10
 Identities = 68/79 (86%)
 Strand = Plus / Plus

                                                                          
Query: 595    cctcatggcgttgcattgcaactgcacgtttcaacgccttancctttgttaaganatttc 654
              ||||||| || ||||||||||| ||||| ||||| |||||  | |||||||| | ||| |
Sbjct: 153626 cctcatgacgctgcattgcaacagcacgcttcaatgcctttgcttttgttaaaagattcc 153685

                                 
Query: 655    taggccttatgttaatagg 673
              |||||||||||||||||||
Sbjct: 153686 taggccttatgttaatagg 153704
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 73.8 bits (37), Expect = 7e-10
 Identities = 68/79 (86%)
 Strand = Plus / Plus

                                                                            
Query: 595      cctcatggcgttgcattgcaactgcacgtttcaacgccttancctttgttaaganatttc 654
                ||||||| || ||||||||||| ||||| ||||| |||||  | |||||||| | ||| |
Sbjct: 27222230 cctcatgacgctgcattgcaacagcacgcttcaatgcctttgcttttgttaaaagattcc 27222289

                                   
Query: 655      taggccttatgttaatagg 673
                |||||||||||||||||||
Sbjct: 27222290 taggccttatgttaatagg 27222308
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>gb|AY216939.1| Plasmodium vivax strain Belem YAC1H14-like sequence
          Length = 101016

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 398   gttgtcttcatcttccgagtctg 420
             |||||||||||||||||||||||
Sbjct: 92810 gttgtcttcatcttccgagtctg 92832
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>gb|AY216938.1| Plasmodium vivax strain IndiaVII YAC1H14-like sequence
          Length = 101158

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 398   gttgtcttcatcttccgagtctg 420
             |||||||||||||||||||||||
Sbjct: 92892 gttgtcttcatcttccgagtctg 92914
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>gb|AY216937.1| Plasmodium vivax strain Salvador I YAC1H14-like sequence
          Length = 101095

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 398   gttgtcttcatcttccgagtctg 420
             |||||||||||||||||||||||
Sbjct: 92889 gttgtcttcatcttccgagtctg 92911
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>gb|AY216936.1| Plasmodium vivax strain Thai-NYU YAC1H14-like sequence
          Length = 101002

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 398   gttgtcttcatcttccgagtctg 420
             |||||||||||||||||||||||
Sbjct: 92796 gttgtcttcatcttccgagtctg 92818
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>gb|AY003872.1| Plasmodium vivax YAC 1H14, complete sequence
          Length = 199866

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 398    gttgtcttcatcttccgagtctg 420
              |||||||||||||||||||||||
Sbjct: 138997 gttgtcttcatcttccgagtctg 139019
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>ref|NM_112724.3| Arabidopsis thaliana EMB1865 AT3G18390 (EMB1865) mRNA, complete cds
          Length = 3021

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                              
Query: 579  atatgctggctgagggcctcatggcgttgcattgcaactgcacgtttcaa 628
            |||||||| || || ||||| ||||||||||||||||  | |||||||||
Sbjct: 2420 atatgctgactaagtgcctcgtggcgttgcattgcaatggaacgtttcaa 2371
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>gb|AY063908.1| Arabidopsis thaliana unknown protein (At3g18390) mRNA, complete cds
          Length = 2961

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                              
Query: 579  atatgctggctgagggcctcatggcgttgcattgcaactgcacgtttcaa 628
            |||||||| || || ||||| ||||||||||||||||  | |||||||||
Sbjct: 2420 atatgctgactaagtgcctcgtggcgttgcattgcaatggaacgtttcaa 2371
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>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome
          Length = 3147090

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 498    gatccatccccgccctcttca 518
              |||||||||||||||||||||
Sbjct: 482097 gatccatccccgccctcttca 482117
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>dbj|AP004543.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT08G20, TM0102b,
            complete sequence
          Length = 38490

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 422  ttcatcctcttcctctttatc 442
            |||||||||||||||||||||
Sbjct: 8741 ttcatcctcttcctctttatc 8721
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>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome
          Length = 4403837

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 519     tcgtagtcctccatgcccaa 538
               ||||||||||||||||||||
Sbjct: 1493688 tcgtagtcctccatgcccaa 1493707
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>gb|BC055663.1| Danio rerio hypothetical protein LOC402830, mRNA (cDNA clone
            IMAGE:2600357), partial cds
          Length = 1231

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 415  agtctgattcatcctcttcctctt 438
            |||||||||||||| |||||||||
Sbjct: 1190 agtctgattcatccccttcctctt 1167
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>ref|XM_993198.1| PREDICTED: Mus musculus polymerase (RNA) III (DNA directed)
           polypeptide G, transcript variant 3 (Polr3g), mRNA
          Length = 2673

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 511 cctcttcatcgtagtcctcc 530
           ||||||||||||||||||||
Sbjct: 376 cctcttcatcgtagtcctcc 357
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>ref|XM_993170.1| PREDICTED: Mus musculus polymerase (RNA) III (DNA directed)
           polypeptide G, transcript variant 2 (Polr3g), mRNA
          Length = 3060

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 511 cctcttcatcgtagtcctcc 530
           ||||||||||||||||||||
Sbjct: 763 cctcttcatcgtagtcctcc 744
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>ref|XM_922321.2| PREDICTED: Mus musculus polymerase (RNA) III (DNA directed)
           polypeptide G, transcript variant 6 (Polr3g), mRNA
          Length = 2673

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 511 cctcttcatcgtagtcctcc 530
           ||||||||||||||||||||
Sbjct: 376 cctcttcatcgtagtcctcc 357
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>ref|XM_912306.2| PREDICTED: Mus musculus polymerase (RNA) III (DNA directed)
           polypeptide G, transcript variant 4 (Polr3g), mRNA
          Length = 3060

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 511 cctcttcatcgtagtcctcc 530
           ||||||||||||||||||||
Sbjct: 763 cctcttcatcgtagtcctcc 744
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>ref|XM_898660.2| PREDICTED: Mus musculus polymerase (RNA) III (DNA directed)
           polypeptide G, transcript variant 3 (Polr3g), mRNA
          Length = 2673

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 511 cctcttcatcgtagtcctcc 530
           ||||||||||||||||||||
Sbjct: 376 cctcttcatcgtagtcctcc 357
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>ref|XM_283153.6| PREDICTED: Mus musculus polymerase (RNA) III (DNA directed)
           polypeptide G, transcript variant 1 (Polr3g), mRNA
          Length = 3060

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 511 cctcttcatcgtagtcctcc 530
           ||||||||||||||||||||
Sbjct: 763 cctcttcatcgtagtcctcc 744
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>gb|AC098886.4| Mus musculus BAC clone RP23-122M21 from 4, complete sequence
          Length = 219825

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 89    cagacttgcagcagcctattgatg 112
             |||||||||||||| |||||||||
Sbjct: 90822 cagacttgcagcagactattgatg 90799
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>gb|AF181898.6| Homo sapiens chromosome 8 clone GS1-402E12 map p23, complete sequence
          Length = 261151

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 186   accaagagaaggacatgacc 205
             ||||||||||||||||||||
Sbjct: 70780 accaagagaaggacatgacc 70761
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>emb|Z50113.1|SPAC31A2 S.pombe chromosome I cosmid c31A2
          Length = 37273

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 480   tcttcactttctgaatctga 499
             ||||||||||||||||||||
Sbjct: 19643 tcttcactttctgaatctga 19624
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>emb|X16880.1|GGLAMB2 Chicken mRNA for lamin B2
          Length = 2157

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 415  agtctgattcatcctcttcctctt 438
            |||||| |||||||||||||||||
Sbjct: 1771 agtctgcttcatcctcttcctctt 1748
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>emb|BX842576.1| Mycobacterium tuberculosis H37Rv complete genome; segment 5/13
          Length = 348264

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 519    tcgtagtcctccatgcccaa 538
              ||||||||||||||||||||
Sbjct: 109431 tcgtagtcctccatgcccaa 109450
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>emb|BX248586.1| Blochmannia floridanus complete genome; segment 3/3
          Length = 188557

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 485   actttctgaatctgatccat 504
             ||||||||||||||||||||
Sbjct: 79081 actttctgaatctgatccat 79100
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>emb|BX248338.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 5/14
          Length = 299450

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 519    tcgtagtcctccatgcccaa 538
              ||||||||||||||||||||
Sbjct: 175909 tcgtagtcctccatgcccaa 175928
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>gb|BC043139.1| Mus musculus UTP11-like, U3 small nucleolar ribonucleoprotein,
            (yeast), mRNA (cDNA clone IMAGE:6822266), with apparent
            retained intron
          Length = 4034

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 89   cagacttgcagcagcctattgatg 112
            |||||||||||||| |||||||||
Sbjct: 2685 cagacttgcagcagactattgatg 2662
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>gb|DQ388013.1| Fenneropenaeus merguiensis clone TAA30 microsatellite sequence
          Length = 221

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 421 attcatcctcttcctcttta 440
           ||||||||||||||||||||
Sbjct: 127 attcatcctcttcctcttta 146
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>gb|AC005010.2| Homo sapiens BAC clone GS1-110L19 from 8, complete sequence
          Length = 197498

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 186    accaagagaaggacatgacc 205
              ||||||||||||||||||||
Sbjct: 104747 accaagagaaggacatgacc 104728
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>ref|XM_692330.1| PREDICTED: Danio rerio hypothetical protein LOC402830 (LOC402830),
           partial mRNA
          Length = 3617

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 415 agtctgattcatcctcttcctctt 438
           |||||||||||||| |||||||||
Sbjct: 790 agtctgattcatccccttcctctt 767
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>gb|AC090119.1|AC090119 Takifugu rubripes clone 242D16, complete sequence
          Length = 107344

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 263   atgaaaccacgcaccataaa 282
             ||||||||||||||||||||
Sbjct: 90406 atgaaaccacgcaccataaa 90387
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>dbj|AK009876.1| Mus musculus adult male tongue cDNA, RIKEN full-length enriched
           library, clone:2310047G20 product:similar to RNA
           POLYMERASE III SUBUNIT [Homo sapiens], full insert
           sequence
          Length = 3008

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 511 cctcttcatcgtagtcctcc 530
           ||||||||||||||||||||
Sbjct: 717 cctcttcatcgtagtcctcc 698
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>gb|AF403769.1|AF403769 Oedaleus asiaticus entomopoxvirus spheroidin gene, complete cds
          Length = 2967

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 563  gatttccaattggtctatatgctg 586
            |||| |||||||||||||||||||
Sbjct: 1079 gattgccaattggtctatatgctg 1102
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>ref|NM_001018323.1| Schizosaccharomyces pombe 972h- hypothetical protein (SPAC31A2.10),
            partial mRNA
          Length = 1383

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 480  tcttcactttctgaatctga 499
            ||||||||||||||||||||
Sbjct: 1094 tcttcactttctgaatctga 1075
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>dbj|AK049789.1| Mus musculus 12 days embryo spinal cord cDNA, RIKEN full-length
           enriched library, clone:C530050A08 product: polymerase
           (RNA) III (DNA directed) polypeptide G, full insert
           sequence
          Length = 2631

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 511 cctcttcatcgtagtcctcc 530
           ||||||||||||||||||||
Sbjct: 377 cctcttcatcgtagtcctcc 358
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>dbj|AK009045.1| Mus musculus adult male tongue cDNA, RIKEN full-length enriched
           library, clone:2300008H03 product:similar to RNA
           POLYMERASE III SUBUNIT [Homo sapiens], full insert
           sequence
          Length = 1670

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 511 cctcttcatcgtagtcctcc 530
           ||||||||||||||||||||
Sbjct: 715 cctcttcatcgtagtcctcc 696
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>ref|NM_205285.1| Gallus gallus lamin B2 (LMNB2), mRNA
          Length = 2157

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 415  agtctgattcatcctcttcctctt 438
            |||||| |||||||||||||||||
Sbjct: 1771 agtctgcttcatcctcttcctctt 1748
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>gb|AC154771.2| Mus musculus BAC clone RP24-448F8 from 13, complete sequence
          Length = 165376

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 511    cctcttcatcgtagtcctcc 530
              ||||||||||||||||||||
Sbjct: 120815 cctcttcatcgtagtcctcc 120834
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>gb|BC066818.1| Mus musculus polymerase (RNA) III (DNA directed) polypeptide G,
           transcript variant 1, mRNA (cDNA clone MGC:76564
           IMAGE:30464021), complete cds
          Length = 3002

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 511 cctcttcatcgtagtcctcc 530
           ||||||||||||||||||||
Sbjct: 693 cctcttcatcgtagtcctcc 674
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>gb|AD000018.1|MSGY151 Mycobacterium tuberculosis sequence from clone y151
          Length = 37036

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 519   tcgtagtcctccatgcccaa 538
             ||||||||||||||||||||
Sbjct: 22884 tcgtagtcctccatgcccaa 22865
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>gb|AC113982.8| Mus musculus chromosome 1, clone RP24-78E16, complete sequence
          Length = 206640

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 399    ttgtcttcatcttccgagtc 418
              ||||||||||||||||||||
Sbjct: 146898 ttgtcttcatcttccgagtc 146917
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>gb|AC160111.2| Mus musculus BAC clone RP24-144L16 from chromosome 9, complete sequence
          Length = 134313

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 469   ctgctgtatcgtcttcactttctg 492
             ||||||| ||||||||||||||||
Sbjct: 10809 ctgctgtctcgtcttcactttctg 10832
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>emb|AL606907.9| Mouse DNA sequence from clone RP23-230F2 on chromosome 4, complete
             sequence
          Length = 208265

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 89    cagacttgcagcagcctattgatg 112
             |||||||||||||| |||||||||
Sbjct: 79264 cagacttgcagcagactattgatg 79241


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,188,425
Number of Sequences: 3902068
Number of extensions: 5188425
Number of successful extensions: 106151
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 106028
Number of HSP's gapped (non-prelim): 123
length of query: 673
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 650
effective length of database: 17,143,297,704
effective search space: 11143143507600
effective search space used: 11143143507600
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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