ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags35i18
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC161588.2| Mus musculus BAC clone RP24-447G12 from chromosom... 46 0.096
2gb|AC104423.4| Homo sapiens chromosome 18, clone RP11-1136J12, c... 44 0.38
3gb|AC008709.6| Homo sapiens chromosome 5 clone CTB-78O4, complet... 44 0.38
4gb|AC010275.6| Homo sapiens chromosome 5 clone CTC-499J9, comple... 44 0.38
5gb|AC023090.12| Homo sapiens chromosome 18, clone RP11-800A18, c... 44 0.38
6gb|BC114744.1| Bos taurus cDNA clone MGC:137927 IMAGE:8083369, c... 42 1.5
7emb|AL450487.17| Human DNA sequence from clone RP11-314A15 on ch... 42 1.5
8emb|Z73121.1|SCYLL016W S.cerevisiae chromosome XII reading frame... 42 1.5
9emb|X97560.1|SC32KBF S.cerevisiae 32kb DNA fragment of chromosom... 42 1.5
10emb|X91488.1|SCCEN12RG S.cerevisiae DNA from CEN12 region includ... 42 1.5
11gb|AC092623.2| Homo sapiens BAC clone RP11-260E12 from 2, comple... 42 1.5
12gb|M26647.1|YSCSDC25 Saccharomyces cerevisiae SDC25 gene, comple... 42 1.5
13emb|BX323557.8| Zebrafish DNA sequence from clone DKEYP-86B9 in ... 42 1.5
14emb|BX072549.4| Zebrafish DNA sequence from clone CH211-114A17 i... 42 1.5
15emb|AL732610.16| Zebrafish DNA sequence from clone CH211-12N8, c... 42 1.5
16gb|AY459430.1| Eimeria acervulina isolate 12 heat shock protein ... 40 5.9
17gb|AC119266.14| Mus musculus chromosome 13, clone RP24-321G8, co... 40 5.9
18gb|BC080510.1| Xenopus tropicalis cDNA clone IMAGE:7028977 40 5.9
19ref|XM_864521.1| PREDICTED: Bos taurus similar to UBX domain con... 40 5.9
20gb|AC109807.9| Mus musculus chromosome 1, clone RP23-433B11, com... 40 5.9
21ref|XM_707287.1| Candida albicans SC5314 hypothetical protein (C... 40 5.9
22ref|XM_707251.1| Candida albicans SC5314 hypothetical protein (C... 40 5.9
23gb|AC124429.4| Mus musculus BAC clone RP24-239N4 from chromosome... 40 5.9
24gb|AC122824.3| Mus musculus BAC clone RP23-206D5 from 13, comple... 40 5.9
25gb|AC127325.4| Mus musculus BAC clone RP23-250E15 from 9, comple... 40 5.9
26ref|XM_675295.1| Plasmodium berghei strain ANKA hypothetical pro... 40 5.9
27ref|XM_659944.1| Cryptosporidium hominis TU502 hypothetical prot... 40 5.9
28emb|Z94722.1|HS60G11 Human DNA sequence from clone RP1-60G11 on ... 40 5.9
29emb|AL161430.19| Human DNA sequence from clone RP11-419D4 on chr... 40 5.9
30emb|CR378666.1| Photobacterium profundum SS9; segment 4/12 40 5.9
31ref|NM_001015989.2| Xenopus tropicalis succinate dehydrogenase c... 40 5.9
32emb|BX571871.1| Photorhabdus luminescens subsp. laumondii TTO1 c... 40 5.9
33emb|AL732621.11| Mouse DNA sequence from clone RP23-299D17 on ch... 40 5.9
34emb|BX571721.8| Zebrafish DNA sequence from clone DKEY-250L23 in... 40 5.9
35emb|BX547935.12| Zebrafish DNA sequence from clone CH211-207C1 i... 40 5.9
36gb|AC009377.7| Drosophila melanogaster 3L BAC RP98-26P20 (Roswel... 40 5.9
37dbj|AP007166.1| Aspergillus oryzae RIB40 genomic DNA, SC113 40 5.9
38gb|AC011092.4| Homo sapiens, clone RP11-1H15, complete sequence 40 5.9
39gb|AC019089.6| Homo sapiens BAC clone RP11-370L14 from 4, comple... 40 5.9
40emb|BX321896.13| Zebrafish DNA sequence from clone RP71-49B22 in... 40 5.9
41gb|AC008821.6| Homo sapiens chromosome 5 clone CTD-2129G21, comp... 40 5.9
42gb|AC159745.5| Mus musculus 6 BAC RP23-394N3 (Roswell Park Cance... 40 5.9
43gb|AC154778.2| Mus musculus BAC clone RP24-459I17 from chromosom... 40 5.9
44dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
45gb|AC008511.6|AC008511 Homo sapiens chromosome 5 clone CTC-454D3... 40 5.9
46gb|AC004765.2| Homo sapiens 12 BAC RPCI11-388A16 (Roswell Park C... 40 5.9
47gb|AC021646.35| Homo sapiens 12 BAC RP11-511B23 (Roswell Park Ca... 40 5.9
48gb|AC160991.3| Mus musculus BAC clone RP23-187D8 from chromosome... 40 5.9
49emb|BX005018.8| Zebrafish DNA sequence from clone DKEY-209K18, c... 40 5.9
50emb|BX640585.2| Pig DNA sequence from clone XX-279G2, complete s... 40 5.9
51emb|AL953892.7| Zebrafish DNA sequence from clone CH211-209C6 in... 40 5.9
52gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome 40 5.9
53gb|AY111851.1| Zea mays CL10944_1 mRNA sequence 40 5.9
54emb|BX005270.7| Zebrafish DNA sequence from clone CH211-158L18 i... 40 5.9
55emb|CR848322.2| Xenopus tropicalis finished cDNA, clone TNeu107a09 40 5.9
56gb|AE003517.3| Drosophila melanogaster chromosome 3L, section 68... 40 5.9
57dbj|AK112436.1| Ciona intestinalis cDNA, clone:ciad062e09, full ... 40 5.9
58gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 5.9
59emb|BX004800.12| Zebrafish DNA sequence from clone DKEY-18F22, c... 40 5.9
60emb|AL954371.6| Zebrafish DNA sequence from clone CH211-207O15, ... 40 5.9
61emb|AL837527.2|CNS08CAQ Oryza sativa chromosome 12, . BAC OSJNBb... 40 5.9
62emb|AL954326.7| Zebrafish DNA sequence from clone DKEY-28N4, com... 40 5.9
63emb|BX276099.7| Zebrafish DNA sequence from clone CH211-204C21 i... 40 5.9
64emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB1... 40 5.9 
>gb|AC161588.2| Mus musculus BAC clone RP24-447G12 from chromosome 13, complete sequence
          Length = 211917

 Score = 46.1 bits (23), Expect = 0.096
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 196    gaatgcaaatatttggtttcatc 218
              |||||||||||||||||||||||
Sbjct: 110637 gaatgcaaatatttggtttcatc 110615
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>gb|AC104423.4| Homo sapiens chromosome 18, clone RP11-1136J12, complete sequence
          Length = 165451

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 148   cattaatacttttcttatttat 169
             ||||||||||||||||||||||
Sbjct: 93083 cattaatacttttcttatttat 93104
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>gb|AC008709.6| Homo sapiens chromosome 5 clone CTB-78O4, complete sequence
          Length = 114421

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 143   cttttcattaatacttttcttattta 168
             ||||||||||||||||||||| ||||
Sbjct: 49333 cttttcattaatacttttcttcttta 49358
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>gb|AC010275.6| Homo sapiens chromosome 5 clone CTC-499J9, complete sequence
          Length = 197255

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 143   cttttcattaatacttttcttattta 168
             ||||||||||||||||||||| ||||
Sbjct: 68939 cttttcattaatacttttcttcttta 68914
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>gb|AC023090.12| Homo sapiens chromosome 18, clone RP11-800A18, complete sequence
          Length = 180016

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 148    cattaatacttttcttatttat 169
              ||||||||||||||||||||||
Sbjct: 167937 cattaatacttttcttatttat 167916
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>gb|BC114744.1| Bos taurus cDNA clone MGC:137927 IMAGE:8083369, complete cds
          Length = 3575

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 82   aaagtaaaactaaatatattt 102
            |||||||||||||||||||||
Sbjct: 3516 aaagtaaaactaaatatattt 3536
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>emb|AL450487.17| Human DNA sequence from clone RP11-314A15 on chromosome Xq12-13.3
              Contains a eukaryotic translation termination factor 1
              (ETF1) pseudogene, a cyclin fold protein 1 (CFP1)
              pseudogene and a CpG island, complete sequence
          Length = 159093

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 14     ggcaaaagtgcgcaaaattgttctctctt 42
              |||| ||||| ||||||||||||||||||
Sbjct: 124049 ggcagaagtgagcaaaattgttctctctt 124077
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>emb|Z73121.1|SCYLL016W S.cerevisiae chromosome XII reading frame ORF YLL016w
          Length = 3886

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 197 aatgcaaatatttggtttcat 217
           |||||||||||||||||||||
Sbjct: 572 aatgcaaatatttggtttcat 592
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>emb|X97560.1|SC32KBF S.cerevisiae 32kb DNA fragment of chromosome XII, left arm
          Length = 32088

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 197   aatgcaaatatttggtttcat 217
             |||||||||||||||||||||
Sbjct: 22252 aatgcaaatatttggtttcat 22272
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>emb|X91488.1|SCCEN12RG S.cerevisiae DNA from CEN12 region including ATS/APSG, SCD25, SOF1,
            DRS1, MMM1 and DNM1 genes
          Length = 43676

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 197  aatgcaaatatttggtttcat 217
            |||||||||||||||||||||
Sbjct: 1785 aatgcaaatatttggtttcat 1805
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>gb|AC092623.2| Homo sapiens BAC clone RP11-260E12 from 2, complete sequence
          Length = 172344

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 234    attgatcttattttactttat 254
              |||||||||||||||||||||
Sbjct: 156091 attgatcttattttactttat 156111
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>gb|M26647.1|YSCSDC25 Saccharomyces cerevisiae SDC25 gene, complete cds
          Length = 5064

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 197  aatgcaaatatttggtttcat 217
            |||||||||||||||||||||
Sbjct: 1013 aatgcaaatatttggtttcat 1033
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>emb|BX323557.8| Zebrafish DNA sequence from clone DKEYP-86B9 in linkage group 5,
             complete sequence
          Length = 223754

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 197   aatgcaaatatttggtttcatcatc 221
             ||||||| |||||||||||||||||
Sbjct: 30721 aatgcaattatttggtttcatcatc 30745
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>emb|BX072549.4| Zebrafish DNA sequence from clone CH211-114A17 in linkage group 5,
             complete sequence
          Length = 167182

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 197   aatgcaaatatttggtttcatcatc 221
             ||||||| |||||||||||||||||
Sbjct: 67175 aatgcaattatttggtttcatcatc 67199
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>emb|AL732610.16| Zebrafish DNA sequence from clone CH211-12N8, complete sequence
          Length = 176982

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 197   aatgcaaatatttggtttcat 217
             |||||||||||||||||||||
Sbjct: 90862 aatgcaaatatttggtttcat 90882
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>gb|AY459430.1| Eimeria acervulina isolate 12 heat shock protein 90 (Hsp90) gene,
            complete cds
          Length = 3898

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 125  tcatgttcccacaatacact 144
            ||||||||||||||||||||
Sbjct: 1764 tcatgttcccacaatacact 1783
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>gb|AC119266.14| Mus musculus chromosome 13, clone RP24-321G8, complete sequence
          Length = 174035

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 8     tgaaaaggcaaaagtgcgcaaaat 31
             |||||||||||||||| |||||||
Sbjct: 35285 tgaaaaggcaaaagtgtgcaaaat 35262
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>gb|BC080510.1| Xenopus tropicalis cDNA clone IMAGE:7028977
          Length = 2425

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 352 tctctatggaaggtctcttc 371
           ||||||||||||||||||||
Sbjct: 710 tctctatggaaggtctcttc 729
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>ref|XM_864521.1| PREDICTED: Bos taurus similar to UBX domain containing 4 (LOC613578),
            mRNA
          Length = 1470

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 223  actttcatagcattgatctt 242
            ||||||||||||||||||||
Sbjct: 1069 actttcatagcattgatctt 1088
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>gb|AC109807.9| Mus musculus chromosome 1, clone RP23-433B11, complete sequence
          Length = 227679

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 77     tggagaaagtaaaactaaatatat 100
              ||||||||||||||||||| ||||
Sbjct: 216043 tggagaaagtaaaactaaaaatat 216020
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>ref|XM_707287.1| Candida albicans SC5314 hypothetical protein (CaO19.13556), mRNA
          Length = 1896

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 191  ttattgaatgcaaatatttg 210
            ||||||||||||||||||||
Sbjct: 1850 ttattgaatgcaaatatttg 1831
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>ref|XM_707251.1| Candida albicans SC5314 hypothetical protein (CaO19.6137), mRNA
          Length = 1896

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 191  ttattgaatgcaaatatttg 210
            ||||||||||||||||||||
Sbjct: 1850 ttattgaatgcaaatatttg 1831
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>gb|AC124429.4| Mus musculus BAC clone RP24-239N4 from chromosome 13, complete sequence
          Length = 168858

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 76    ctggagaaagtaaaactaaatatatttg 103
             |||||| ||||||||| |||||||||||
Sbjct: 19691 ctggagtaagtaaaacaaaatatatttg 19718
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>gb|AC122824.3| Mus musculus BAC clone RP23-206D5 from 13, complete sequence
          Length = 195655

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 76     ctggagaaagtaaaactaaatatatttg 103
              |||||| ||||||||| |||||||||||
Sbjct: 168111 ctggagtaagtaaaacaaaatatatttg 168138
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>gb|AC127325.4| Mus musculus BAC clone RP23-250E15 from 9, complete sequence
          Length = 160846

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 190   tttattgaatgcaaatattt 209
             ||||||||||||||||||||
Sbjct: 85141 tttattgaatgcaaatattt 85160
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>ref|XM_675295.1| Plasmodium berghei strain ANKA hypothetical protein (PB000802.02.0)
           partial mRNA
          Length = 1446

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 190 tttattgaatgcaaatatttggtt 213
           ||||||||||| ||||||||||||
Sbjct: 672 tttattgaatgaaaatatttggtt 649
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>ref|XM_659944.1| Cryptosporidium hominis TU502 hypothetical protein (Chro.60628)
           partial mRNA
          Length = 771

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 150 ttaatacttttcttatttat 169
           ||||||||||||||||||||
Sbjct: 112 ttaatacttttcttatttat 131
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>emb|Z94722.1|HS60G11 Human DNA sequence from clone RP1-60G11 on chromosome Xq21.1-21.3,
              complete sequence
          Length = 106839

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 93     aaatatatttgcaactgcat 112
              ||||||||||||||||||||
Sbjct: 103544 aaatatatttgcaactgcat 103525
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>emb|AL161430.19| Human DNA sequence from clone RP11-419D4 on chromosome 13 Contains the
             5' end of the gene for muscleblind-like protein (MBLL39)
             and a CpG island, complete sequence
          Length = 159191

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 64    gaatagaaatctctggagaa 83
             ||||||||||||||||||||
Sbjct: 15888 gaatagaaatctctggagaa 15869
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>emb|CR378666.1| Photobacterium profundum SS9; segment 4/12
          Length = 348313

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 260    acatctctcactaaaaagtg 279
              ||||||||||||||||||||
Sbjct: 332052 acatctctcactaaaaagtg 332033
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>ref|NM_001015989.2| Xenopus tropicalis succinate dehydrogenase complex, subunit A,
           flavoprotein (Fp) (sdha), mRNA
          Length = 2336

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 352 tctctatggaaggtctcttc 371
           ||||||||||||||||||||
Sbjct: 678 tctctatggaaggtctcttc 697
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>emb|BX571871.1| Photorhabdus luminescens subsp. laumondii TTO1 complete genome; segment
              13/17
          Length = 349944

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 142    acttttcattaatacttttc 161
              ||||||||||||||||||||
Sbjct: 285408 acttttcattaatacttttc 285427
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>emb|AL732621.11| Mouse DNA sequence from clone RP23-299D17 on chromosome 11 Contains
             part of the Asb3 gene for ankyrin repeat and SOCS
             box-containing protein 3 and a Cpg island, complete
             sequence
          Length = 94738

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 83    aagtaaaactaaatatattt 102
             ||||||||||||||||||||
Sbjct: 42837 aagtaaaactaaatatattt 42856
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>emb|BX571721.8| Zebrafish DNA sequence from clone DKEY-250L23 in linkage group 8,
             complete sequence
          Length = 168402

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 87    aaaactaaatatatttgcaa 106
             ||||||||||||||||||||
Sbjct: 68885 aaaactaaatatatttgcaa 68866
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>emb|BX547935.12| Zebrafish DNA sequence from clone CH211-207C1 in linkage group 16,
              complete sequence
          Length = 195252

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                              
Query: 223    actttcatagcattgatcttattttactttat 254
              |||| |||||||||||| |||||||| |||||
Sbjct: 131535 acttccatagcattgattttattttattttat 131504
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>gb|AC009377.7| Drosophila melanogaster 3L BAC RP98-26P20 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 194308

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 87     aaaactaaatatatttgcaa 106
              ||||||||||||||||||||
Sbjct: 175059 aaaactaaatatatttgcaa 175078
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>dbj|AP007166.1| Aspergillus oryzae RIB40 genomic DNA, SC113
          Length = 1841713

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 177     catcatggattgctttattg 196
               ||||||||||||||||||||
Sbjct: 1061521 catcatggattgctttattg 1061502
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>gb|AC011092.4| Homo sapiens, clone RP11-1H15, complete sequence
          Length = 192318

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 324    ggaagcttattcagcatatt 343
              ||||||||||||||||||||
Sbjct: 182452 ggaagcttattcagcatatt 182471
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>gb|AC019089.6| Homo sapiens BAC clone RP11-370L14 from 4, complete sequence
          Length = 177160

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 75     tctggagaaagtaaaactaaatat 98
              ||||||||||||||||| ||||||
Sbjct: 115487 tctggagaaagtaaaaccaaatat 115510
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>emb|BX321896.13| Zebrafish DNA sequence from clone RP71-49B22 in linkage group 23,
             complete sequence
          Length = 165985

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 87    aaaactaaatatatttgcaa 106
             ||||||||||||||||||||
Sbjct: 59134 aaaactaaatatatttgcaa 59115
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>gb|AC008821.6| Homo sapiens chromosome 5 clone CTD-2129G21, complete sequence
          Length = 184111

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 209    tggtttcatcatccactttc 228
              ||||||||||||||||||||
Sbjct: 156285 tggtttcatcatccactttc 156266
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>gb|AC159745.5| Mus musculus 6 BAC RP23-394N3 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 185824

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 235   ttgatcttattttactttat 254
             ||||||||||||||||||||
Sbjct: 98323 ttgatcttattttactttat 98304
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>gb|AC154778.2| Mus musculus BAC clone RP24-459I17 from chromosome 12, complete sequence
          Length = 155367

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 1      agtgacatgaaaaggcaaaa 20
              ||||||||||||||||||||
Sbjct: 118100 agtgacatgaaaaggcaaaa 118119
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 89       aactaaatatatttgcaact 108
                ||||||||||||||||||||
Sbjct: 19623808 aactaaatatatttgcaact 19623827
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>gb|AC008511.6|AC008511 Homo sapiens chromosome 5 clone CTC-454D3, complete sequence
          Length = 160770

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 209    tggtttcatcatccactttc 228
              ||||||||||||||||||||
Sbjct: 136653 tggtttcatcatccactttc 136672
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>gb|AC004765.2| Homo sapiens 12 BAC RPCI11-388A16 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 150812

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 80    agaaagtaaaactaaatata 99
             ||||||||||||||||||||
Sbjct: 97374 agaaagtaaaactaaatata 97355
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>gb|AC021646.35| Homo sapiens 12 BAC RP11-511B23 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 165089

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 149    attaatacttttcttattta 168
              ||||||||||||||||||||
Sbjct: 149248 attaatacttttcttattta 149229
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>gb|AC160991.3| Mus musculus BAC clone RP23-187D8 from chromosome 13, complete sequence
          Length = 186863

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 8      tgaaaaggcaaaagtgcgcaaaat 31
              |||||||||||||||| |||||||
Sbjct: 162380 tgaaaaggcaaaagtgtgcaaaat 162357
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>emb|BX005018.8| Zebrafish DNA sequence from clone DKEY-209K18, complete sequence
          Length = 183614

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 87    aaaactaaatatatttgcaa 106
             ||||||||||||||||||||
Sbjct: 48233 aaaactaaatatatttgcaa 48214
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>emb|BX640585.2| Pig DNA sequence from clone XX-279G2, complete sequence
          Length = 96095

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 143  cttttcattaatacttttcttatt 166
            ||||||||| ||||||||||||||
Sbjct: 1781 cttttcatttatacttttcttatt 1804
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>emb|AL953892.7| Zebrafish DNA sequence from clone CH211-209C6 in linkage group 21,
              complete sequence
          Length = 202472

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 73     tctctggagaaagtaaaact 92
              ||||||||||||||||||||
Sbjct: 121495 tctctggagaaagtaaaact 121476
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>gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome
          Length = 3940880

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 190    tttattgaatgcaaatattt 209
              ||||||||||||||||||||
Sbjct: 712137 tttattgaatgcaaatattt 712118
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>gb|AY111851.1| Zea mays CL10944_1 mRNA sequence
          Length = 894

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 366 ctcttcttctgatcaatctccacacatt 393
           |||||||||||||| || ||||||||||
Sbjct: 292 ctcttcttctgatcgatatccacacatt 319
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>emb|BX005270.7| Zebrafish DNA sequence from clone CH211-158L18 in linkage group 15,
             complete sequence
          Length = 67408

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 72    atctctggagaaagtaaaac 91
             ||||||||||||||||||||
Sbjct: 40294 atctctggagaaagtaaaac 40313
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>emb|CR848322.2| Xenopus tropicalis finished cDNA, clone TNeu107a09
          Length = 2336

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 352 tctctatggaaggtctcttc 371
           ||||||||||||||||||||
Sbjct: 678 tctctatggaaggtctcttc 697
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>gb|AE003517.3| Drosophila melanogaster chromosome 3L, section 68 of 83 of the complete
              sequence
          Length = 257692

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 87     aaaactaaatatatttgcaa 106
              ||||||||||||||||||||
Sbjct: 234188 aaaactaaatatatttgcaa 234207
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>dbj|AK112436.1| Ciona intestinalis cDNA, clone:ciad062e09, full insert sequence
          Length = 2161

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 86  taaaactaaatatatttgca 105
           ||||||||||||||||||||
Sbjct: 300 taaaactaaatatatttgca 281
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 89       aactaaatatatttgcaact 108
                ||||||||||||||||||||
Sbjct: 19550022 aactaaatatatttgcaact 19550041
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>emb|BX004800.12| Zebrafish DNA sequence from clone DKEY-18F22, complete sequence
          Length = 269096

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 93    aaatatatttgcaactgcatgata 116
             ||||||||||||| ||||||||||
Sbjct: 11278 aaatatatttgcacctgcatgata 11301
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>emb|AL954371.6| Zebrafish DNA sequence from clone CH211-207O15, complete sequence
          Length = 124954

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 149   attaatacttttcttattta 168
             ||||||||||||||||||||
Sbjct: 60939 attaatacttttcttattta 60920
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>emb|AL837527.2|CNS08CAQ Oryza sativa chromosome 12, . BAC OSJNBb0078B20 of library OSJNBb from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 133659

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 89     aactaaatatatttgcaact 108
              ||||||||||||||||||||
Sbjct: 103185 aactaaatatatttgcaact 103166
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>emb|AL954326.7| Zebrafish DNA sequence from clone DKEY-28N4, complete sequence
          Length = 147387

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 72     atctctggagaaagtaaaac 91
              ||||||||||||||||||||
Sbjct: 116389 atctctggagaaagtaaaac 116408
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>emb|BX276099.7| Zebrafish DNA sequence from clone CH211-204C21 in linkage group 5,
             complete sequence
          Length = 164049

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 320   cactggaagcttattcagca 339
             ||||||||||||||||||||
Sbjct: 46306 cactggaagcttattcagca 46325
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>emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB122 of Yarrowia lipolytica
          Length = 3633272

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 166     ttatgaaatgccatcatgga 185
               ||||||||||||||||||||
Sbjct: 2489938 ttatgaaatgccatcatgga 2489919


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,851,420
Number of Sequences: 3902068
Number of extensions: 5851420
Number of successful extensions: 128713
Number of sequences better than 10.0: 64
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 128432
Number of HSP's gapped (non-prelim): 281
length of query: 439
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 417
effective length of database: 17,147,199,772
effective search space: 7150382304924
effective search space used: 7150382304924
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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