ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags35i15
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MOK1_SCHPO (Q9USK8) Cell wall alpha-1,3-glucan synthase mok1 (EC... 30 2.0
2GPR21_HUMAN (Q99679) Probable G-protein coupled receptor 21 29 3.4
3YG3F_YEAST (P53283) Hypothetical transport protein YGR138C 29 3.4
4GPR52_HUMAN (Q9Y2T5) Probable G-protein coupled receptor 52 28 5.7
5KCNC1_RAT (P25122) Potassium voltage-gated channel subfamily C m... 28 7.5
6KCNC1_MOUSE (P15388) Potassium voltage-gated channel subfamily C... 28 7.5
7KCNC1_HUMAN (P48547) Potassium voltage-gated channel subfamily C... 28 7.5

>MOK1_SCHPO (Q9USK8) Cell wall alpha-1,3-glucan synthase mok1 (EC 2.4.1.183)|
          Length = 2410

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 8/75 (10%)
 Frame = -1

Query: 286  IYLAVGVVLDFSCYQMTIFAVQSWVHASVVYLYTIFRLLGSPYHGNYYQWYLI------- 128
            I+LA+G +L  + YQ+T+F   S +    +Y    F      + G  + W+ +       
Sbjct: 1990 IFLALGQILAATAYQLTLFTGTSNIQTYEIYSVCAF------FIGASFVWWFMFARLPSY 2043

Query: 127  YIID-PWLIFTPISF 86
            Y++  PWL +    F
Sbjct: 2044 YVLSIPWLFYAVALF 2058



to top

>GPR21_HUMAN (Q99679) Probable G-protein coupled receptor 21|
          Length = 349

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
 Frame = -1

Query: 301 CIERLIYLAVGVVLDFSCY------QMTIFAVQSWVHASVVYLYTIFRLLGSPYHGNYYQ 140
           CI    Y+A+   L ++        ++ IF +  W+++++V+L + F      YHG+ +Q
Sbjct: 122 CISIDRYIAITKPLTYNTLVTPWRLRLCIFLI--WLYSTLVFLPSFFHWGKPGYHGDVFQ 179

Query: 139 W 137
           W
Sbjct: 180 W 180



to top

>YG3F_YEAST (P53283) Hypothetical transport protein YGR138C|
          Length = 614

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 25/59 (42%), Positives = 30/59 (50%), Gaps = 8/59 (13%)
 Frame = -3

Query: 203 SCVLVHHI*IIGFSLSR*LLSMVLDLYHRSVAY-----LYTHFIL---LASS*KCKLNC 51
           SC L+    +IGFSL   + S V DLY R VAY     LY  F +   LA +  C L C
Sbjct: 211 SCSLM----VIGFSLGPLIWSPVSDLYGRRVAYFVSMGLYVIFNIPCALAPNLGCLLAC 265



to top

>GPR52_HUMAN (Q9Y2T5) Probable G-protein coupled receptor 52|
          Length = 361

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
 Frame = -1

Query: 301 CIERLIYLAVGVVLDFSCY----QMTIFAVQSWVHASVVYLYTIFRLLGSPYHGNYYQW 137
           CI    YLA+   L ++      ++ I  +  W+++ +++L + F      YHG+ ++W
Sbjct: 134 CISVDRYLAITKPLSYNQLVTPCRLRICIILIWIYSCLIFLPSFFGWGKPGYHGDIFEW 192



to top

>KCNC1_RAT (P25122) Potassium voltage-gated channel subfamily C member 1|
           (Voltage-gated potassium channel subunit Kv3.1) (Kv4)
           (NGK2) (RAW2)
          Length = 585

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = -1

Query: 184 IFRLLGSPYHGNYYQWYLIYIIDPWLIFTPISFCLQVHENVNSIV 50
           I+ L   PY   Y + Y+ +    +++ +  +FCL+ HE  N IV
Sbjct: 176 IWALFEDPYSSRYAR-YVAFASLFFILVSITTFCLETHERFNPIV 219



to top

>KCNC1_MOUSE (P15388) Potassium voltage-gated channel subfamily C member 1|
           (Voltage-gated potassium channel subunit Kv3.1) (Kv4)
           (NGK2)
          Length = 511

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = -1

Query: 184 IFRLLGSPYHGNYYQWYLIYIIDPWLIFTPISFCLQVHENVNSIV 50
           I+ L   PY   Y + Y+ +    +++ +  +FCL+ HE  N IV
Sbjct: 176 IWALFEDPYSSRYAR-YVAFASLFFILVSITTFCLETHERFNPIV 219



to top

>KCNC1_HUMAN (P48547) Potassium voltage-gated channel subfamily C member 1|
           (Voltage-gated potassium channel subunit Kv3.1) (Kv4)
           (NGK2)
          Length = 511

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = -1

Query: 184 IFRLLGSPYHGNYYQWYLIYIIDPWLIFTPISFCLQVHENVNSIV 50
           I+ L   PY   Y + Y+ +    +++ +  +FCL+ HE  N IV
Sbjct: 176 IWALFEDPYSSRYAR-YVAFASLFFILVSITTFCLETHERFNPIV 219


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,843,880
Number of Sequences: 219361
Number of extensions: 864405
Number of successful extensions: 1801
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1801
length of database: 80,573,946
effective HSP length: 85
effective length of database: 61,928,261
effective search space used: 1486278264
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top