>ALMS1_MOUSE (Q8K4E0) Alstrom syndrome protein 1 homolog|
          Length = 3251

 Score = 33.9 bits (76), Expect = 0.37
 Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
 Frame = +3

Query: 186  TPNEQTTRSCHVAFTCTCNRDELEGGGDAVGWRGREEGDAPHLEVGDPFLEVGSSDLRQG 365
            T  +    SCH AF      D + G      WRGR    +  +E  +P  +VGSS   Q 
Sbjct: 1747 TAEQPRPDSCHCAFRSVEPSDLIRGHRSPSSWRGRHINLSRSIEQSNPCFKVGSSFQLQS 1806

Query: 366  N----ELCSDSRQPWRGMGL 413
            +    +L  D  +  +G+G+
Sbjct: 1807 HPPFQKLLPDDIKISKGVGM 1826

>FTSK_ECOL6 (Q8FJC7) DNA translocase ftsK|
          Length = 1347

 Score = 33.1 bits (74), Expect = 0.63
 Identities = 20/66 (30%), Positives = 28/66 (42%)
 Frame = -2

Query: 539 PATHGAPAMAPMLVQVRT*RDDRPWRRCSASMEPESPLSAIPKSHAPPWLPRVRAELVPL 360
           P  +GAP   P+ V        + W   +A +EP +    +     PP  P V  + VP 
Sbjct: 309 PLLNGAPITEPVAVAAAATTATQSW---AAPVEPVTQTPPVASVDVPPTQPTVAWQPVPG 365

Query: 359 PQIGAP 342
           PQ G P
Sbjct: 366 PQTGEP 371

>FTSK_ECOLI (P46889) DNA translocase ftsK|
          Length = 1329

 Score = 32.7 bits (73), Expect = 0.82
 Identities = 20/66 (30%), Positives = 28/66 (42%)
 Frame = -2

Query: 539 PATHGAPAMAPMLVQVRT*RDDRPWRRCSASMEPESPLSAIPKSHAPPWLPRVRAELVPL 360
           P  +GAP   P+ V        + W   +A +EP +    +     PP  P V  + VP 
Sbjct: 309 PLLNGAPITEPVAVAAAATTATQSW---AAPVEPVTQTPPVASVDVPPAQPTVAWQPVPG 365

Query: 359 PQIGAP 342
           PQ G P
Sbjct: 366 PQTGEP 371

>FTSK_ECO57 (Q8X5H9) DNA translocase ftsK|
          Length = 1342

 Score = 32.7 bits (73), Expect = 0.82
 Identities = 20/66 (30%), Positives = 28/66 (42%)
 Frame = -2

Query: 539 PATHGAPAMAPMLVQVRT*RDDRPWRRCSASMEPESPLSAIPKSHAPPWLPRVRAELVPL 360
           P  +GAP   P+ V        + W   +A +EP +    +     PP  P V  + VP 
Sbjct: 309 PLLNGAPITEPVAVAAAATTATQSW---AAPVEPVTQTPPVASVDVPPSQPTVAWQPVPG 365

Query: 359 PQIGAP 342
           PQ G P
Sbjct: 366 PQTGEP 371

>FTSK_SHIFL (Q83S00) DNA translocase ftsK|
          Length = 1342

 Score = 30.4 bits (67), Expect = 4.1
 Identities = 19/66 (28%), Positives = 27/66 (40%)
 Frame = -2

Query: 539 PATHGAPAMAPMLVQVRT*RDDRPWRRCSASMEPESPLSAIPKSHAPPWLPRVRAELVPL 360
           P  + AP   P+ V        + W   +A +EP +    +     PP  P V  + VP 
Sbjct: 309 PLLNSAPITEPVAVAAAATTATQSW---AAPVEPVTQTPPVASVDVPPSQPTVAWQPVPG 365

Query: 359 PQIGAP 342
           PQ G P
Sbjct: 366 PQTGEP 371

>SOX21_MOUSE (Q811W0) Transcription factor SOX-21|
          Length = 276

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 21/69 (30%), Positives = 27/69 (39%)
 Frame = +3

Query: 312 LEVGDPFLEVGSSDLRQGNELCSDSRQPWRGMGLGDGRERRLWFHGSAATTPGAIIASGP 491
           L++G    E+ SS    G    S    P  G G          FHG+AA    A  A+G 
Sbjct: 173 LDLGSKMAEISSSS--SGLPYASSLGYPTAGAGA---------FHGAAAAAAAAAAAAGG 221

Query: 492 HLNEHRGHG 518
           H + H   G
Sbjct: 222 HTHSHPSPG 230

>SOX21_HUMAN (Q9Y651) Transcription factor SOX-21 (SOX-A)|
          Length = 276

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 21/69 (30%), Positives = 27/69 (39%)
 Frame = +3

Query: 312 LEVGDPFLEVGSSDLRQGNELCSDSRQPWRGMGLGDGRERRLWFHGSAATTPGAIIASGP 491
           L++G    E+ SS    G    S    P  G G          FHG+AA    A  A+G 
Sbjct: 173 LDLGSKMAEISSSS--SGLPYASSLGYPTAGAGA---------FHGAAAAAAAAAAAAGG 221

Query: 492 HLNEHRGHG 518
           H + H   G
Sbjct: 222 HTHSHPSPG 230

>MIAA_TREPA (O83644) tRNA delta(2)-isopentenylpyrophosphate transferase (EC|
           2.5.1.8) (IPP transferase) (Isopentenyl-diphosphate:tRNA
           isopentenyltransferase) (IPTase) (IPPT)
          Length = 316

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +3

Query: 321 GDPFLEVGSSDLRQGNELCSDSRQPWRGMGLGDGRERRLW 440
           G   L V  +   QG  + +DSRQ +RG+ +G G++  L+
Sbjct: 32  GKTALAVALAQKYQGEIISADSRQVYRGLDVGTGKDLALY 71

>SOX21_CHICK (Q9W7R5) Transcription factor SOX-21|
          Length = 280

 Score = 29.3 bits (64), Expect = 9.1
 Identities = 23/69 (33%), Positives = 31/69 (44%)
 Frame = +3

Query: 312 LEVGDPFLEVGSSDLRQGNELCSDSRQPWRGMGLGDGRERRLWFHGSAATTPGAIIASGP 491
           L++G    E+ SS    G+ L   S   + G G G G      FHG+AA    A  A+G 
Sbjct: 173 LDLGSKMAEISSSS-SAGSALPYASSLGYPGAG-GAGA-----FHGAAAAAAAAAAAAGG 225

Query: 492 HLNEHRGHG 518
           H + H   G
Sbjct: 226 HTHSHPSPG 234


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,319,224
Number of Sequences: 219361
Number of extensions: 1537429
Number of successful extensions: 4805
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4805
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5253413348
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)