ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags35h18 |
|---|---|
| Clone Library Name | barley_pub |
>PGIP1_ORYSA (Q8GT95) Polygalacturonase inhibitor 1 precursor| (Polygalacturonase-inhibiting protein) (Floral organ regulator 1) Length = 332 Score = 68.2 bits (165), Expect = 1e-11 Identities = 29/38 (76%), Positives = 31/38 (81%) Frame = -2 Query: 455 NCLCGPLPKLHGVMRHGCKPYEHNLCHRGAPLESSCHQ 342 N LCGPLP+LHGV+RHGCKPYEHN C GAPL CHQ Sbjct: 295 NRLCGPLPRLHGVIRHGCKPYEHNQCAGGAPL-GGCHQ 331
>PGIP2_ARATH (Q9M5J8) Polygalacturonase inhibitor 2 precursor| (Polygalacturonase-inhibiting protein) (PGIP-2) Length = 330 Score = 30.8 bits (68), Expect = 1.7 Identities = 15/34 (44%), Positives = 18/34 (52%) Frame = -2 Query: 455 NCLCGPLPKLHGVMRHGCKPYEHNLCHRGAPLES 354 N LCG +PK + R + HN C GAPL S Sbjct: 295 NRLCGRIPKGEYIQRFDSYSFFHNKCLCGAPLPS 328
>IRS2_HUMAN (Q9Y4H2) Insulin receptor substrate 2 (IRS-2)| Length = 1338 Score = 30.4 bits (67), Expect = 2.2 Identities = 23/75 (30%), Positives = 33/75 (44%) Frame = +1 Query: 217 KPQSTVLRSSYTRTYAHENANTDRHHSSYNVPPSAGGEVAQSWWQLLSSGAPRWQRLCS* 396 +P+S S + T+ RHH N+PPS G V +S L++ P + CS Sbjct: 301 RPRSKSQSSGSSATHPISVPGARRHHHLVNLPPSQTGLVRRSRTDSLAATPPAAK--CS- 357 Query: 397 GLHPCRMTPCSLGSG 441 CR+ S G G Sbjct: 358 ---SCRVRTASEGDG 369
>DERM_HUMAN (Q07507) Dermatopontin precursor (Tyrosine-rich acidic matrix| protein) (TRAMP) Length = 201 Score = 29.6 bits (65), Expect = 3.8 Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 1/62 (1%) Frame = +1 Query: 211 YTKPQSTVLRSSYTRTYAHENANTDRHHSSYNVP-PSAGGEVAQSWWQLLSSGAPRWQRL 387 Y PQ V+ + R+ + +DR + +P P + GE + WW+ ++ W + Sbjct: 48 YQCPQGQVIVA--VRSIFSKKEGSDRQWNYACMPTPQSLGEPTECWWEEINRAGMEWYQT 105 Query: 388 CS 393 CS Sbjct: 106 CS 107
>VP4_ROTBC (P08713) Outer capsid protein VP4 (Hemagglutinin) (Outer layer| protein VP4) [Contains: Outer capsid protein VP8; Outer capsid protein VP5] Length = 776 Score = 29.6 bits (65), Expect = 3.8 Identities = 14/23 (60%), Positives = 17/23 (73%), Gaps = 3/23 (13%) Frame = -2 Query: 443 GPL---PKLHGVMRHGCKPYEHN 384 GPL PKL+GVM+HG K Y +N Sbjct: 156 GPLLSTPKLYGVMKHGGKIYTYN 178
>IBB_LENCU (Q8W4Y8) Bowman-Birk type proteinase inhibitor precursor| (Trypsin/chymotrypsin inhibitor) Length = 110 Score = 29.3 bits (64), Expect = 4.9 Identities = 14/34 (41%), Positives = 16/34 (47%) Frame = -1 Query: 111 CVLCVCVPYWRCASPRECVCARVRESGWXACXKC 10 C C+C + P C C VRES AC KC Sbjct: 51 CDTCLCTR----SQPPTCRCVDVRESCHSACDKC 80
>CRVP_OPHHA (Q7ZT98) Ophanin precursor (Opharin)| Length = 239 Score = 29.3 bits (64), Expect = 4.9 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 1/57 (1%) Frame = +1 Query: 241 SSYTRTYAHENANTDRHHS-SYNVPPSAGGEVAQSWWQLLSSGAPRWQRLCS*GLHP 408 S TR + D H+S +V P+A + W+ +S A RW C+ G P Sbjct: 24 SESTRRQKKQKEIVDLHNSLRRSVSPTASNMLKMQWYPEAASNAERWASNCNLGHSP 80
>IRS2_MOUSE (P81122) Insulin receptor substrate 2 (IRS-2) (4PS)| Length = 1321 Score = 29.3 bits (64), Expect = 4.9 Identities = 22/75 (29%), Positives = 33/75 (44%) Frame = +1 Query: 217 KPQSTVLRSSYTRTYAHENANTDRHHSSYNVPPSAGGEVAQSWWQLLSSGAPRWQRLCS* 396 +P+S S + T+ RHH N+PPS G V +S L++ P + C+ Sbjct: 298 RPRSKSQSSGSSATHPISVPGARRHHHLVNLPPSQTGLVRRSRTDSLAATPPAAK--CT- 354 Query: 397 GLHPCRMTPCSLGSG 441 CR+ S G G Sbjct: 355 ---SCRVRTASEGDG 366
>CRVP1_NAJAT (Q7T1K6) Natrin-1 precursor (Cysteine-rich venom protein 1)| (NA-CRVP1) (Protein G2a) Length = 239 Score = 28.9 bits (63), Expect = 6.4 Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 1/52 (1%) Frame = +1 Query: 241 SSYTRTYAHENANTDRHHS-SYNVPPSAGGEVAQSWWQLLSSGAPRWQRLCS 393 S TR + D H+S V P+A + W+ +S A RW CS Sbjct: 24 SESTRRKKKQKEIVDLHNSLRRRVSPTASNMLKMEWYPEAASNAERWANTCS 75
>CAH1_HUMAN (P00915) Carbonic anhydrase 1 (EC 4.2.1.1) (Carbonic anhydrase I)| (Carbonate dehydratase I) (CA-I) Length = 260 Score = 28.9 bits (63), Expect = 6.4 Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 6/64 (9%) Frame = +3 Query: 3 PFNTXY------MHXIPIPEHGHTHTLSGKRISSTVHTHTARTHLYRLVVHKASSSQGPR 164 PF+ Y H EHG HT+ G + S+ +H + Y + AS + G Sbjct: 83 PFSDSYRLFQFHFHWGSTNEHGSEHTVDGVKYSAELHVAHWNSAKYSSLAEAASKADGLA 142 Query: 165 LSGI 176 + G+ Sbjct: 143 VIGV 146
>VP4_NCDV (P17465) Outer capsid protein VP4 (Hemagglutinin) (Outer layer| protein VP4) [Contains: Outer capsid protein VP8; Outer capsid protein VP5] Length = 775 Score = 28.5 bits (62), Expect = 8.4 Identities = 11/17 (64%), Positives = 14/17 (82%) Frame = -2 Query: 434 PKLHGVMRHGCKPYEHN 384 PKL+GVM+HG K Y +N Sbjct: 162 PKLYGVMKHGGKIYTYN 178
>RF2_THEMA (Q9X1R5) Peptide chain release factor 2 (RF-2)| Length = 369 Score = 28.5 bits (62), Expect = 8.4 Identities = 13/36 (36%), Positives = 19/36 (52%) Frame = +1 Query: 271 NANTDRHHSSYNVPPSAGGEVAQSWWQLLSSGAPRW 378 N D +++ +V P AGG +Q W Q+L RW Sbjct: 119 NGKYDPNNAYLSVHPGAGGTESQDWAQMLLRMYMRW 154
>RF2_LACLA (Q9CGX1) Peptide chain release factor 2 (RF-2)| Length = 365 Score = 28.5 bits (62), Expect = 8.4 Identities = 23/106 (21%), Positives = 41/106 (38%) Frame = +1 Query: 61 LSRGSASPVRYTHTQHAHISIVWSYTKLAALKDRACQALPQYQRGTPLH*YTKPQSTVLR 240 + +A +Y + Q + + + T L L++ A + + + K +S L Sbjct: 56 IDESNALKAKYDNYQAMNNMLEEAQTMLEMLQEEADEEMQAELEEMTIALGQKIESYELE 115 Query: 241 SSYTRTYAHENANTDRHHSSYNVPPSAGGEVAQSWWQLLSSGAPRW 378 + Y H NA + H P +GG +Q W +L RW Sbjct: 116 IMLNQPYDHMNAVLEIH-------PGSGGTESQDWGSMLMRMYTRW 154
>DERM_BOVIN (P19427) Dermatopontin (Tyrosine-rich acidic matrix protein)| (TRAMP) (22 kDa extracellular matrix protein) (Dermatan sulfate proteoglycan-associated protein 22K) Length = 183 Score = 28.5 bits (62), Expect = 8.4 Identities = 12/48 (25%), Positives = 24/48 (50%), Gaps = 1/48 (2%) Frame = +1 Query: 253 RTYAHENANTDRHHSSYNVP-PSAGGEVAQSWWQLLSSGAPRWQRLCS 393 R+ ++ +DR + +P P + GE + WW+ ++ W + CS Sbjct: 42 RSIFNKKEGSDRQWNYACMPTPQSLGEPTECWWEEINRAGMEWYQTCS 89
>4ET_HUMAN (Q9NRA8) Eukaryotic translation initiation factor 4E transporter| (eIF4E transporter) (4E-T) (Eukaryotic translation initiation factor 4E nuclear import factor 1) Length = 985 Score = 28.5 bits (62), Expect = 8.4 Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 4/73 (5%) Frame = +3 Query: 33 PIPEHGHTHTLSGKRISSTVHTHTARTHLYRLVVH-KASSSQGPRLSGITT---VPARYS 200 P+P +H L R + +H + L R V+H S S +S TT VP+R Sbjct: 876 PLP--AASHPLLNPRPGTPLHLAMVQQQLQRSVLHPPGSGSHAAAVSVQTTPQNVPSRSG 933 Query: 201 TPLVY*APKHRPS 239 P ++ +HRPS Sbjct: 934 LPHMHSQLEHRPS 946
>VP4_ROTSF (P17463) Outer capsid protein VP4 (Hemagglutinin) (Outer layer| protein VP4) [Contains: Outer capsid protein VP8; Outer capsid protein VP5] Length = 776 Score = 28.5 bits (62), Expect = 8.4 Identities = 11/17 (64%), Positives = 14/17 (82%) Frame = -2 Query: 434 PKLHGVMRHGCKPYEHN 384 PKL+GVM+HG K Y +N Sbjct: 162 PKLYGVMKHGGKIYTYN 178
>VP4_ROTB5 (P36305) Outer capsid protein VP4 (Hemagglutinin) (Outer layer| protein VP4) [Contains: Outer capsid protein VP8; Outer capsid protein VP5] Length = 776 Score = 28.5 bits (62), Expect = 8.4 Identities = 11/17 (64%), Positives = 14/17 (82%) Frame = -2 Query: 434 PKLHGVMRHGCKPYEHN 384 PKL+GVM+HG K Y +N Sbjct: 162 PKLYGVMKHGGKIYTYN 178 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 61,476,378 Number of Sequences: 219361 Number of extensions: 1261303 Number of successful extensions: 3889 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 3689 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3883 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2851757076 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
