ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags35h09 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC147802.2| Oryza sativa chromosome 3 BAC OSJNBb0013C14 genomic sequence, complete sequence Length = 132981 Score = 81.8 bits (41), Expect = 2e-12 Identities = 143/177 (80%) Strand = Plus / Plus Query: 207 gcatcaaggaacaaccttggaagccttcatcttatcgatccaagcgatgaaggagttgat 266 |||||| || |||| |||| || |||||||||| || ||||| | | ||||||| || | Sbjct: 122316 gcatcatgggacaatcttgaaaaccttcatcttttctatccatgtgttgaaggaattcac 122375 Query: 267 ggtgttacggaagccgaggaacccatgctccttgctcttattcatgttgtccaaatgctc 326 ||||| |||||||| ||||| ||||| ||||||||||| |||||| | ||||||||||| Sbjct: 122376 cgtgttccggaagccaaggaatccatgttccttgctcttgttcatgctatccaaatgctc 122435 Query: 327 gatgtcgatattgaacatggcatcaacgaacccccagctggtgatctcctcaagctc 383 | || || ||||| ||||||||| |||| ||| |||||||||| |||||||| Sbjct: 122436 gctgcggacgccgaacacggcatcaacaaaccaccaattggtgatctcttcaagctc 122492
>gb|AC147803.2| Oryza sativa chromosome 3 BAC OSJNBb0034P05 genomic sequence, complete sequence Length = 35334 Score = 81.8 bits (41), Expect = 2e-12 Identities = 143/177 (80%) Strand = Plus / Plus Query: 207 gcatcaaggaacaaccttggaagccttcatcttatcgatccaagcgatgaaggagttgat 266 |||||| || |||| |||| || |||||||||| || ||||| | | ||||||| || | Sbjct: 1837 gcatcatgggacaatcttgaaaaccttcatcttttctatccatgtgttgaaggaattcac 1896 Query: 267 ggtgttacggaagccgaggaacccatgctccttgctcttattcatgttgtccaaatgctc 326 ||||| |||||||| ||||| ||||| ||||||||||| |||||| | ||||||||||| Sbjct: 1897 cgtgttccggaagccaaggaatccatgttccttgctcttgttcatgctatccaaatgctc 1956 Query: 327 gatgtcgatattgaacatggcatcaacgaacccccagctggtgatctcctcaagctc 383 | || || ||||| ||||||||| |||| ||| |||||||||| |||||||| Sbjct: 1957 gctgcggacgccgaacacggcatcaacaaaccaccaattggtgatctcttcaagctc 2013
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 81.8 bits (41), Expect = 2e-12 Identities = 143/177 (80%) Strand = Plus / Plus Query: 207 gcatcaaggaacaaccttggaagccttcatcttatcgatccaagcgatgaaggagttgat 266 |||||| || |||| |||| || |||||||||| || ||||| | | ||||||| || | Sbjct: 18217331 gcatcatgggacaatcttgaaaaccttcatcttttctatccatgtgttgaaggaattcac 18217390 Query: 267 ggtgttacggaagccgaggaacccatgctccttgctcttattcatgttgtccaaatgctc 326 ||||| |||||||| ||||| ||||| ||||||||||| |||||| | ||||||||||| Sbjct: 18217391 cgtgttccggaagccaaggaatccatgttccttgctcttgttcatgctatccaaatgctc 18217450 Query: 327 gatgtcgatattgaacatggcatcaacgaacccccagctggtgatctcctcaagctc 383 | || || ||||| ||||||||| |||| ||| |||||||||| |||||||| Sbjct: 18217451 gctgcggacgccgaacacggcatcaacaaaccaccaattggtgatctcttcaagctc 18217507 Score = 58.0 bits (29), Expect = 3e-05 Identities = 56/65 (86%) Strand = Plus / Minus Query: 255 gaaggagttgatggtgttacggaagccgaggaacccatgctccttgctcttattcatgtt 314 |||||| |||| ||||| |||||||| ||||| || |||||||||||||| |||||| | Sbjct: 17401391 gaaggacttgaccgtgttgcggaagcctaggaagccgtgctccttgctcttgttcatggt 17401332 Query: 315 gtcca 319 ||||| Sbjct: 17401331 gtcca 17401327
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 81.8 bits (41), Expect = 2e-12 Identities = 143/177 (80%) Strand = Plus / Plus Query: 207 gcatcaaggaacaaccttggaagccttcatcttatcgatccaagcgatgaaggagttgat 266 |||||| || |||| |||| || |||||||||| || ||||| | | ||||||| || | Sbjct: 18210872 gcatcatgggacaatcttgaaaaccttcatcttttctatccatgtgttgaaggaattcac 18210931 Query: 267 ggtgttacggaagccgaggaacccatgctccttgctcttattcatgttgtccaaatgctc 326 ||||| |||||||| ||||| ||||| ||||||||||| |||||| | ||||||||||| Sbjct: 18210932 cgtgttccggaagccaaggaatccatgttccttgctcttgttcatgctatccaaatgctc 18210991 Query: 327 gatgtcgatattgaacatggcatcaacgaacccccagctggtgatctcctcaagctc 383 | || || ||||| ||||||||| |||| ||| |||||||||| |||||||| Sbjct: 18210992 gctgcggacgccgaacacggcatcaacaaaccaccaattggtgatctcttcaagctc 18211048 Score = 58.0 bits (29), Expect = 3e-05 Identities = 56/65 (86%) Strand = Plus / Minus Query: 255 gaaggagttgatggtgttacggaagccgaggaacccatgctccttgctcttattcatgtt 314 |||||| |||| ||||| |||||||| ||||| || |||||||||||||| |||||| | Sbjct: 17394932 gaaggacttgaccgtgttgcggaagcctaggaagccgtgctccttgctcttgttcatggt 17394873 Query: 315 gtcca 319 ||||| Sbjct: 17394872 gtcca 17394868
>dbj|AK106105.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-207-C11, full insert sequence Length = 1562 Score = 81.8 bits (41), Expect = 2e-12 Identities = 143/177 (80%) Strand = Plus / Minus Query: 207 gcatcaaggaacaaccttggaagccttcatcttatcgatccaagcgatgaaggagttgat 266 |||||| || |||| |||| || |||||||||| || ||||| | | ||||||| || | Sbjct: 1384 gcatcatgggacaatcttgaaaaccttcatcttttctatccatgtgttgaaggaattcac 1325 Query: 267 ggtgttacggaagccgaggaacccatgctccttgctcttattcatgttgtccaaatgctc 326 ||||| |||||||| ||||| ||||| ||||||||||| |||||| | ||||||||||| Sbjct: 1324 cgtgttccggaagccaaggaatccatgttccttgctcttgttcatgctatccaaatgctc 1265 Query: 327 gatgtcgatattgaacatggcatcaacgaacccccagctggtgatctcctcaagctc 383 | || || ||||| ||||||||| |||| ||| |||||||||| |||||||| Sbjct: 1264 gctgcggacgccgaacacggcatcaacaaaccaccaattggtgatctcttcaagctc 1208
>dbj|AK060848.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E05, full insert sequence Length = 1461 Score = 81.8 bits (41), Expect = 2e-12 Identities = 143/177 (80%) Strand = Plus / Minus Query: 207 gcatcaaggaacaaccttggaagccttcatcttatcgatccaagcgatgaaggagttgat 266 |||||| || |||| |||| || |||||||||| || ||||| | | ||||||| || | Sbjct: 1283 gcatcatgggacaatcttgaaaaccttcatcttttctatccatgtgttgaaggaattcac 1224 Query: 267 ggtgttacggaagccgaggaacccatgctccttgctcttattcatgttgtccaaatgctc 326 ||||| |||||||| ||||| ||||| ||||||||||| |||||| | ||||||||||| Sbjct: 1223 cgtgttccggaagccaaggaatccatgttccttgctcttgttcatgctatccaaatgctc 1164 Query: 327 gatgtcgatattgaacatggcatcaacgaacccccagctggtgatctcctcaagctc 383 | || || ||||| ||||||||| |||| ||| |||||||||| |||||||| Sbjct: 1163 gctgcggacgccgaacacggcatcaacaaaccaccaattggtgatctcttcaagctc 1107
>dbj|AK065159.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002B24, full insert sequence Length = 1411 Score = 73.8 bits (37), Expect = 5e-10 Identities = 100/121 (82%) Strand = Plus / Minus Query: 207 gcatcaaggaacaaccttggaagccttcatcttatcgatccaagcgatgaaggagttgat 266 |||||| || |||| |||| || |||||||||| || ||||| | | ||||||| || | Sbjct: 1347 gcatcatgggacaatcttgaaaaccttcatcttttctatccatgtgttgaaggaattcac 1288 Query: 267 ggtgttacggaagccgaggaacccatgctccttgctcttattcatgttgtccaaatgctc 326 ||||| |||||||| ||||| ||||| ||||||||||| |||||| | ||||||||||| Sbjct: 1287 cgtgttccggaagccaaggaatccatgttccttgctcttgttcatgctatccaaatgctc 1228 Query: 327 g 327 | Sbjct: 1227 g 1227
>gb|BT016933.1| Zea mays clone E04912703G08.c mRNA sequence Length = 430 Score = 65.9 bits (33), Expect = 1e-07 Identities = 126/157 (80%) Strand = Plus / Plus Query: 230 ccttcatcttatcgatccaagcgatgaaggagttgatggtgttacggaagccgaggaacc 289 |||||| ||| |||||||| | | |||| ||| ||| ||||| | |||||||||||| | Sbjct: 220 ccttcagcttctcgatccatgtgttgaaagagctgacagtgttcctgaagccgaggaagc 279 Query: 290 catgctccttgctcttattcatgttgtccaaatgctcgatgtcgatattgaacatggcat 349 ||||||||||||| || |||||| |||||| | ||| | | || | | |||||||||| Sbjct: 280 catgctccttgcttttgttcatgctgtccagaagctgggtctccacagcaaacatggcat 339 Query: 350 caacgaacccccagctggtgatctcctcaagctccgt 386 | ||||||| ||| | |||||||| ||||||||||| Sbjct: 340 cgacgaaccaccaattcgtgatctcgtcaagctccgt 376
>gb|AC114983.6| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0032H19 map E30331S, complete sequence Length = 164820 Score = 58.0 bits (29), Expect = 3e-05 Identities = 56/65 (86%) Strand = Plus / Plus Query: 255 gaaggagttgatggtgttacggaagccgaggaacccatgctccttgctcttattcatgtt 314 |||||| |||| ||||| |||||||| ||||| || |||||||||||||| |||||| | Sbjct: 162318 gaaggacttgaccgtgttgcggaagcctaggaagccgtgctccttgctcttgttcatggt 162377 Query: 315 gtcca 319 ||||| Sbjct: 162378 gtcca 162382
>gb|AC135598.4| Oryza sativa chromosome 3 BAC OSJNBb0021K20 genomic sequence, complete sequence Length = 137220 Score = 58.0 bits (29), Expect = 3e-05 Identities = 56/65 (86%) Strand = Plus / Minus Query: 255 gaaggagttgatggtgttacggaagccgaggaacccatgctccttgctcttattcatgtt 314 |||||| |||| ||||| |||||||| ||||| || |||||||||||||| |||||| | Sbjct: 123768 gaaggacttgaccgtgttgcggaagcctaggaagccgtgctccttgctcttgttcatggt 123709 Query: 315 gtcca 319 ||||| Sbjct: 123708 gtcca 123704
>gb|AY738712.1| Digitalis thapsi progesterone 5-beta-reductase gene, complete cds Length = 1247 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Minus Query: 289 ccatgctccttgctcttattcat 311 ||||||||||||||||||||||| Sbjct: 1168 ccatgctccttgctcttattcat 1146
>gb|AY738710.1| Digitalis mariana subsp. heywoodii progesterone 5-beta-reductase gene, complete cds Length = 1247 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Minus Query: 289 ccatgctccttgctcttattcat 311 ||||||||||||||||||||||| Sbjct: 1168 ccatgctccttgctcttattcat 1146
>gb|AY585868.1| Digitalis purpurea putative progesterone 5-beta-reductase gene, complete cds Length = 1247 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Minus Query: 289 ccatgctccttgctcttattcat 311 ||||||||||||||||||||||| Sbjct: 1168 ccatgctccttgctcttattcat 1146
>emb|AJ310673.1|DPU310673 Digitalis purpurea mRNA for progesterone 5-beta-reductase (p5Br gene) Length = 1357 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Minus Query: 289 ccatgctccttgctcttattcat 311 ||||||||||||||||||||||| Sbjct: 1102 ccatgctccttgctcttattcat 1080
>ref|XM_479054.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1233 Score = 44.1 bits (22), Expect = 0.40 Identities = 43/50 (86%) Strand = Plus / Minus Query: 268 gtgttacggaagccgaggaacccatgctccttgctcttattcatgttgtc 317 ||||| ||||| || ||||| || |||||||||||||| |||||| |||| Sbjct: 1175 gtgttccggaaccccaggaatccgtgctccttgctcttgttcatggtgtc 1126 Score = 40.1 bits (20), Expect = 6.3 Identities = 32/36 (88%) Strand = Plus / Minus Query: 411 gatctctgtccacacggcctccttcccagccatggc 446 |||||| | |||||| ||||||||||| |||||||| Sbjct: 1032 gatctccgcccacaccgcctccttcccggccatggc 997
>gb|AC124461.3| Mus musculus BAC clone RP24-144C5 from chromosome 7, complete sequence Length = 185788 Score = 44.1 bits (22), Expect = 0.40 Identities = 25/26 (96%) Strand = Plus / Plus Query: 414 ctctgtccacacggcctccttcccag 439 |||| ||||||||||||||||||||| Sbjct: 113067 ctctctccacacggcctccttcccag 113092
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 44.1 bits (22), Expect = 0.40 Identities = 43/50 (86%) Strand = Plus / Minus Query: 268 gtgttacggaagccgaggaacccatgctccttgctcttattcatgttgtc 317 ||||| ||||| || ||||| || |||||||||||||| |||||| |||| Sbjct: 24502768 gtgttccggaaccccaggaatccgtgctccttgctcttgttcatggtgtc 24502719 Score = 40.1 bits (20), Expect = 6.3 Identities = 32/36 (88%) Strand = Plus / Minus Query: 411 gatctctgtccacacggcctccttcccagccatggc 446 |||||| | |||||| ||||||||||| |||||||| Sbjct: 24502625 gatctccgcccacaccgcctccttcccggccatggc 24502590
>dbj|AP004230.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ2013_G04 Length = 73667 Score = 44.1 bits (22), Expect = 0.40 Identities = 43/50 (86%) Strand = Plus / Minus Query: 268 gtgttacggaagccgaggaacccatgctccttgctcttattcatgttgtc 317 ||||| ||||| || ||||| || |||||||||||||| |||||| |||| Sbjct: 52578 gtgttccggaaccccaggaatccgtgctccttgctcttgttcatggtgtc 52529 Score = 40.1 bits (20), Expect = 6.3 Identities = 32/36 (88%) Strand = Plus / Minus Query: 411 gatctctgtccacacggcctccttcccagccatggc 446 |||||| | |||||| ||||||||||| |||||||| Sbjct: 52435 gatctccgcccacaccgcctccttcccggccatggc 52400
>gb|AC149222.4| Mus musculus BAC clone RP23-325D10 from 7, complete sequence Length = 220651 Score = 44.1 bits (22), Expect = 0.40 Identities = 25/26 (96%) Strand = Plus / Minus Query: 414 ctctgtccacacggcctccttcccag 439 |||| ||||||||||||||||||||| Sbjct: 10140 ctctctccacacggcctccttcccag 10115
>gb|AC093175.9| Mus musculus Strain C57BL6/J Chromosome 7 BAC, RP23-200D13, complete sequence Length = 219763 Score = 44.1 bits (22), Expect = 0.40 Identities = 25/26 (96%) Strand = Plus / Minus Query: 414 ctctgtccacacggcctccttcccag 439 |||| ||||||||||||||||||||| Sbjct: 172323 ctctctccacacggcctccttcccag 172298
>gb|AC109139.15| Mus musculus chromosome 8, clone RP23-47L13, complete sequence Length = 268904 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 413 tctctgtccacacggcctcct 433 ||||||||||||||||||||| Sbjct: 121779 tctctgtccacacggcctcct 121759
>gb|AC182490.3| Pan troglodytes BAC clone CH251-430P12 from chromosome 2, complete sequence Length = 158411 Score = 42.1 bits (21), Expect = 1.6 Identities = 30/33 (90%) Strand = Plus / Plus Query: 87 tacaacaattggcacaaataacagcatgtaact 119 |||||||| | |||||||| ||||||||||||| Sbjct: 100377 tacaacaaattgcacaaatcacagcatgtaact 100409
>gb|AC120782.25| Pan troglodytes clone rp43-45g12, complete sequence Length = 167170 Score = 42.1 bits (21), Expect = 1.6 Identities = 30/33 (90%) Strand = Plus / Minus Query: 87 tacaacaattggcacaaataacagcatgtaact 119 |||||||| | |||||||| ||||||||||||| Sbjct: 44088 tacaacaaattgcacaaatcacagcatgtaact 44056
>dbj|AP007155.1| Aspergillus oryzae RIB40 genomic DNA, SC003 Length = 4170692 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 429 ctccttcccagccatggcgtc 449 ||||||||||||||||||||| Sbjct: 2757152 ctccttcccagccatggcgtc 2757132
>gb|AC023194.9| Homo sapiens, clone RP11-216N21, complete sequence Length = 175834 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 131 caaattgataaatgagagataaaat 155 |||||||||||||||||| |||||| Sbjct: 89089 caaattgataaatgagagctaaaat 89065
>gb|AC073869.5| Homo sapiens BAC clone RP11-109E12 from 2, complete sequence Length = 195280 Score = 42.1 bits (21), Expect = 1.6 Identities = 30/33 (90%) Strand = Plus / Minus Query: 87 tacaacaattggcacaaataacagcatgtaact 119 |||||||| | |||||||| ||||||||||||| Sbjct: 138998 tacaacaaattgcacaaatcacagcatgtaact 138966
>ref|XM_473990.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1392 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 306 attcatgttgtccaaatgct 325 |||||||||||||||||||| Sbjct: 1181 attcatgttgtccaaatgct 1200
>gb|U88165.1| Caenorhabditis elegans cosmid F54C1, complete sequence Length = 31433 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 132 aaattgataaatgagagataaaat 155 ||||||| |||||||||||||||| Sbjct: 28407 aaattgaaaaatgagagataaaat 28430
>emb|AL772197.12| Human DNA sequence from clone RP11-24O6 on chromosome X Contains the 5' end of the SH3KBP1 gene for SH3-domain kinase binding protein 1 (CIN85), two novel genes and one CpG island, complete sequence Length = 106342 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 153 aatgggatctggtggcatac 172 |||||||||||||||||||| Sbjct: 92537 aatgggatctggtggcatac 92518
>emb|AL138787.11| Human DNA sequence from clone RP4-665N4 on chromosome 1p34.1-35.3 Contains the 3' end of the EIF2C3 gene for eukaryotic translation initiation factor 2C, 3, a putative novel transcript, a implantation-associated protein (DKFZp564K142) processed pseudogene, the TEKT2 gene for tektin 2 (testicular), the COL8A2 gene for collagen, type VIII, alpha 2, complete sequence Length = 128133 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 183 acaatagagtactagacaataaga 206 |||||| ||||||||||||||||| Sbjct: 43571 acaatacagtactagacaataaga 43548
>gb|AC113558.8| Homo sapiens chromosome 18, clone RP11-1130K19, complete sequence Length = 165957 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 138 ataaatgagagataaaatgg 157 |||||||||||||||||||| Sbjct: 68546 ataaatgagagataaaatgg 68527
>emb|AL161492.2|ATCHRIV4 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 4 Length = 198697 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 318 caaatgctcgatgtcgatat 337 |||||||||||||||||||| Sbjct: 99585 caaatgctcgatgtcgatat 99604
>gb|AC068522.7| Homo sapiens chromosome 8, clone RP11-23K11, complete sequence Length = 146952 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 304 ttattcatgttgtccaaatg 323 |||||||||||||||||||| Sbjct: 96854 ttattcatgttgtccaaatg 96873
>gb|AC104810.5| Homo sapiens BAC clone RP11-641D2 from 4, complete sequence Length = 165432 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 112 atgtaactaatttcagaagc 131 |||||||||||||||||||| Sbjct: 135692 atgtaactaatttcagaagc 135711
>gb|AC021460.10| Homo sapiens chromosome 15, clone RP11-259F15, complete sequence Length = 146698 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 319 aaatgctcgatgtcgatattgaacatgg 346 ||||||| ||||| |||||||||||||| Sbjct: 139479 aaatgcttgatgttgatattgaacatgg 139452
>gb|AC128966.4| Rattus norvegicus BAC CH230-194D11 (Children's Hospital Oakland Research Institute) complete sequence Length = 214096 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 tttatttggttctggcttat 79 |||||||||||||||||||| Sbjct: 87023 tttatttggttctggcttat 87042
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 306 attcatgttgtccaaatgct 325 |||||||||||||||||||| Sbjct: 32037339 attcatgttgtccaaatgct 32037320
>gb|AC009453.13|AC009453 Homo sapiens chromosome 18, clone RP11-59F14, complete sequence Length = 168947 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 ataaatgagagataaaatgg 157 |||||||||||||||||||| Sbjct: 162091 ataaatgagagataaaatgg 162110
>gb|AC018804.9| Homo sapiens BAC clone RP11-397H17 from 2, complete sequence Length = 195514 Score = 40.1 bits (20), Expect = 6.3 Identities = 29/32 (90%) Strand = Plus / Minus Query: 87 tacaacaattggcacaaataacagcatgtaac 118 |||||||| | |||||||| |||||||||||| Sbjct: 28664 tacaacaaattgcacaaatcacagcatgtaac 28633
>gb|AC104607.15| Drosophila melanogaster X BAC RP98-19G9 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 137639 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 120 aatttcagaagcaaattgataaat 143 ||||||| |||||||||||||||| Sbjct: 58880 aatttcaaaagcaaattgataaat 58857
>gb|AC130390.4| Drosophila melanogaster X BAC RP98-21O19 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 184175 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 120 aatttcagaagcaaattgataaat 143 ||||||| |||||||||||||||| Sbjct: 172634 aatttcaaaagcaaattgataaat 172611
>gb|AC097108.5| Homo sapiens BAC clone RP11-745K4 from 4, complete sequence Length = 207516 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 112 atgtaactaatttcagaagc 131 |||||||||||||||||||| Sbjct: 22775 atgtaactaatttcagaagc 22794
>gb|AF096370.1|F11O4 Arabidopsis thaliana BAC F11O4 Length = 72872 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 318 caaatgctcgatgtcgatat 337 |||||||||||||||||||| Sbjct: 3992 caaatgctcgatgtcgatat 3973
>dbj|AK099320.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033008O14, full insert sequence Length = 1787 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 306 attcatgttgtccaaatgct 325 |||||||||||||||||||| Sbjct: 1309 attcatgttgtccaaatgct 1328
>dbj|AK065665.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013041I04, full insert sequence Length = 1859 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 306 attcatgttgtccaaatgct 325 |||||||||||||||||||| Sbjct: 1359 attcatgttgtccaaatgct 1378
>emb|AL732334.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0323C08, complete sequence Length = 94903 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 306 attcatgttgtccaaatgct 325 |||||||||||||||||||| Sbjct: 20660 attcatgttgtccaaatgct 20641
>gb|AE003448.4| Drosophila melanogaster chromosome X, section 32 of 74 of the complete sequence Length = 318665 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 120 aatttcagaagcaaattgataaat 143 ||||||| |||||||||||||||| Sbjct: 199523 aatttcaaaagcaaattgataaat 199500
>emb|AL662988.4|OSJN00186 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0089N06, complete sequence Length = 141752 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 306 attcatgttgtccaaatgct 325 |||||||||||||||||||| Sbjct: 58046 attcatgttgtccaaatgct 58027
>gb|AC126323.6| Homo sapiens chromosome 15, clone RP11-299H22, complete sequence Length = 170132 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 319 aaatgctcgatgtcgatattgaacatgg 346 ||||||| ||||| |||||||||||||| Sbjct: 80575 aaatgcttgatgttgatattgaacatgg 80602
>emb|AL844873.4| Mouse DNA sequence from clone RP23-26H8 on chromosome 2, complete sequence Length = 250495 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 209 atcaaggaacaaccttggaa 228 |||||||||||||||||||| Sbjct: 128950 atcaaggaacaaccttggaa 128931 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,848,347 Number of Sequences: 3902068 Number of extensions: 3848347 Number of successful extensions: 73325 Number of sequences better than 10.0: 50 Number of HSP's better than 10.0 without gapping: 50 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 73078 Number of HSP's gapped (non-prelim): 247 length of query: 466 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 444 effective length of database: 17,147,199,772 effective search space: 7613356698768 effective search space used: 7613356698768 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
