ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags35h06 |
|---|---|
| Clone Library Name | barley_pub |
>ABDA_DROME (P29555) Homeobox protein abdominal-A| Length = 590 Score = 37.0 bits (84), Expect = 0.035 Identities = 35/135 (25%), Positives = 46/135 (34%), Gaps = 3/135 (2%) Frame = -1 Query: 535 EHLGRHPRAQVRVPVQDPSRVPQARPRCNRQHLG*VFRGLQLGRDHGEDGEP*GRVXGHG 356 +HLG+ P + PV S Q P+ +QHL H Sbjct: 105 QHLGQSPHS----PVSSSSPFQQHHPQVQQQHL------------------------NHQ 136 Query: 355 ASQDQGHRQP--HRDEERSRRPLQLPAEGHHVHGRRSSGCCHDGWPLHRHQQLQLQVPDH 182 Q H+Q H LQL + HH+ ++ G H HQQL L P Sbjct: 137 QQQHLHHQQQQHHHQYSSLSAALQLQQQQHHISKLAAAAVASHG---HAHQQLLLTPPSA 193 Query: 181 GGEAQG-KAFGPDPS 140 G G + P PS Sbjct: 194 GNSQAGDSSCSPSPS 208
>SRCH_RABIT (P16230) Sarcoplasmic reticulum histidine-rich calcium-binding| protein precursor Length = 852 Score = 32.3 bits (72), Expect = 0.86 Identities = 35/135 (25%), Positives = 52/135 (38%), Gaps = 24/135 (17%) Frame = -1 Query: 406 RDHGEDGEP*GRVXGHGASQDQGHRQPHRD-------EERSRRPLQLPAEGHHVHGRR-S 251 RDHGE + R GH Q QGHR + EE R A GH HG + Sbjct: 87 RDHGETDDEVSREYGH---QPQGHRYHSPEAGDESVSEEGVHREQARQAPGHGGHGEAGA 143 Query: 250 SGCCHDGWPLHRHQQ--------------LQLQVPDHGGEAQGKAFGPDPSLRLD--YHG 119 G H H++ L+ HGGE +G+ + + + + G Sbjct: 144 EDLAEHGSHGHGHEEEDEDVISSERPRHVLRRAPRGHGGEEEGEEEEEEEEVSPEHRHRG 203 Query: 118 IGRNNK*NKTSASTE 74 G+ ++ ++ STE Sbjct: 204 HGKEDEEDEDDDSTE 218 Score = 30.8 bits (68), Expect = 2.5 Identities = 24/86 (27%), Positives = 31/86 (36%), Gaps = 6/86 (6%) Frame = -1 Query: 403 DHGEDGEP*GRVXGHGASQDQGHRQPHRDEERSRRPLQLPAEGHHVHGRR---SSGCCHD 233 D G+D GH A + QGH + + +P GH HG + G D Sbjct: 491 DDGDDSTE----NGHQAHRHQGHGKEEAEVTSDEHHHHVPDHGHQGHGDKEGEEEGVSTD 546 Query: 232 GW---PLHRHQQLQLQVPDHGGEAQG 164 W P H H GGE +G Sbjct: 547 HWHQVPRHAHH-------GPGGEEEG 565 Score = 30.8 bits (68), Expect = 2.5 Identities = 26/106 (24%), Positives = 39/106 (36%), Gaps = 21/106 (19%) Frame = -1 Query: 361 HGASQDQGH-RQPHRDEERSRRPLQLPAEGHHVHGRRSSGCCHDG-------WPLHRHQ- 209 H A + +GH + D++ +P GH H G DG HRHQ Sbjct: 449 HQAHRHRGHGEEEDEDDDDEGEHHHVPHRGHRGHEEDDGGDDDDGDDSTENGHQAHRHQG 508 Query: 208 -----------QLQLQVPDHGGEAQGKAFGPDPSLRLD-YHGIGRN 107 + VPDHG + G G + + D +H + R+ Sbjct: 509 HGKEEAEVTSDEHHHHVPDHGHQGHGDKEGEEEGVSTDHWHQVPRH 554
>GBF_DICDI (P36417) G-box-binding factor (GBF)| Length = 708 Score = 32.0 bits (71), Expect = 1.1 Identities = 20/90 (22%), Positives = 34/90 (37%) Frame = -1 Query: 349 QDQGHRQPHRDEERSRRPLQLPAEGHHVHGRRSSGCCHDGWPLHRHQQLQLQVPDHGGEA 170 Q Q H+Q H +++ ++ + HH H + H+ H+H Q Q H + Sbjct: 198 QQQQHQQQHHQQQQQQQQQHHQQQQHHQHSQPQQQHQHNQQQQHQHNQQQ-----HQQQQ 252 Query: 169 QGKAFGPDPSLRLDYHGIGRNNK*NKTSAS 80 P L G NN N +++ Sbjct: 253 NQIQMVPQQPQSLSNSGNNNNNNNNNNNSN 282
>CUT_DROME (P10180) Homeobox protein cut| Length = 2175 Score = 31.2 bits (69), Expect = 1.9 Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 10/119 (8%) Frame = -1 Query: 349 QDQGHRQPHRDEERSRRPLQLPAEGHH---------VHGRRSSGCCHDGWPLHRHQQLQL 197 Q Q H+Q H+ +++ + L + HH + +S H G LH H L Sbjct: 668 QQQHHQQQHQHQQQHHQQQHLHQQHHHHLQQQPNSGSNSNPASNDHHHGHHLHGHGLLHP 727 Query: 196 QVPDHGGEAQGKAFGPDPSLRLDYHGIGRNNK*NKTSA-STERVLSSLYCTCNRTACIL 23 H ++ + + G NN + T+A ST ++ +SL T N T ++ Sbjct: 728 SSAHHLHHQTTESNSNSSTPTAAGNNNGSNNSSSNTNANSTAQLAASLASTLNGTKSLM 786
>NIPBL_HUMAN (Q6KC79) Nipped-B-like protein (Delangin) (SCC2 homolog)| Length = 2804 Score = 31.2 bits (69), Expect = 1.9 Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 2/70 (2%) Frame = -1 Query: 352 SQDQGHRQPHR-DEERSRRPLQLPAEGHHVHGRRSSGCCHDGWP-LHRHQQLQLQVPDHG 179 S D+G + HR D+ R RRP L + + HG +S D HRH+ + Sbjct: 824 SDDRGESERHRGDQSRVRRPETLRSSSRNEHGIKSDSSKTDKLERKHRHESGDSRERPSS 883 Query: 178 GEAQGKAFGP 149 GE + + P Sbjct: 884 GEQKSRPDSP 893
>HRG_RABIT (Q28640) Histidine-rich glycoprotein precursor| (Histidine-proline-rich glycoprotein) (HPRG) (Fragment) Length = 526 Score = 30.8 bits (68), Expect = 2.5 Identities = 23/70 (32%), Positives = 27/70 (38%), Gaps = 2/70 (2%) Frame = -1 Query: 346 DQGHRQPHRDEERS--RRPLQLPAEGHHVHGRRSSGCCHDGWPLHRHQQLQLQVPDHGGE 173 ++ HR PH + RP P GHH HG G G P H H P HG Sbjct: 310 NETHRFPHHRISVNIIHRP---PPHGHHPHGPPPHGHHPHGPPPHGH-------PPHGPP 359 Query: 172 AQGKAFGPDP 143 + GP P Sbjct: 360 PRHPPHGPPP 369
>TRPD_LEIXX (Q6AFI7) Anthranilate phosphoribosyltransferase (EC 2.4.2.18)| Length = 349 Score = 29.6 bits (65), Expect = 5.6 Identities = 16/41 (39%), Positives = 21/41 (51%) Frame = +1 Query: 199 VVAVDAGVEAIRHGNIPSSSVRGHDVPLPVVEGDVDCAPRR 321 +VA AGV I+HGN +SS G L + D+ P R Sbjct: 101 IVAAGAGVPVIKHGNRAASSSSGSSDVLAALGIDLTLPPER 141
>PP1RA_PANTR (Q7YR38) Serine/threonine-protein phosphatase 1 regulatory subunit 10| (MHC class I region proline-rich protein CAT53) (Protein FB19) Length = 940 Score = 29.6 bits (65), Expect = 5.6 Identities = 30/96 (31%), Positives = 34/96 (35%), Gaps = 5/96 (5%) Frame = -1 Query: 406 RDHGEDGEP*GRVXGHGASQDQGHRQPHRDEERSRRPLQLPAEGHHVHGRRSSGCCHDGW 227 R H G G GH + GH PH RP +P GH H H G Sbjct: 830 RPHEGPGGSMGGSGGHRPHEGPGHGGPH-----GHRPHDVP--GHRGHD-------HRGP 875 Query: 226 PLHRHQQLQLQVPDHGGEAQ-----GKAFGPDPSLR 134 P H H+ P HGG G + G D S R Sbjct: 876 PPHEHR--GHDGPGHGGGGHRGHDGGHSHGGDMSNR 909
>PP1RA_HUMAN (Q96QC0) Serine/threonine-protein phosphatase 1 regulatory subunit 10| (Phosphatase 1 nuclear targeting subunit) (MHC class I region proline-rich protein CAT53) (FB19 protein) (PP1-binding protein of 114 kDa) (p99) Length = 940 Score = 29.6 bits (65), Expect = 5.6 Identities = 30/96 (31%), Positives = 34/96 (35%), Gaps = 5/96 (5%) Frame = -1 Query: 406 RDHGEDGEP*GRVXGHGASQDQGHRQPHRDEERSRRPLQLPAEGHHVHGRRSSGCCHDGW 227 R H G G GH + GH PH RP +P GH H H G Sbjct: 830 RPHEGPGGSMGGSGGHRPHEGPGHGGPH-----GHRPHDVP--GHRGHD-------HRGP 875 Query: 226 PLHRHQQLQLQVPDHGGEAQ-----GKAFGPDPSLR 134 P H H+ P HGG G + G D S R Sbjct: 876 PPHEHR--GHDGPGHGGGGHRGHDGGHSHGGDMSNR 909
>SRCH_HUMAN (P23327) Sarcoplasmic reticulum histidine-rich calcium-binding| protein precursor Length = 699 Score = 29.3 bits (64), Expect = 7.3 Identities = 17/61 (27%), Positives = 21/61 (34%), Gaps = 9/61 (14%) Frame = -1 Query: 364 GHGASQDQGHRQPHRDEERSRRPLQLPAEGHHVHGRRSSGC---------CHDGWPLHRH 212 GH D+G + +EE + GH H R G H P HRH Sbjct: 184 GHDGEDDEGEEEEEEEEEEEEASTEY---GHQAHRHRGHGSEEDEDVSDGHHHHGPSHRH 240 Query: 211 Q 209 Q Sbjct: 241 Q 241
>AMOL2_MOUSE (Q8K371) Angiomotin-like protein 2| Length = 772 Score = 29.3 bits (64), Expect = 7.3 Identities = 31/93 (33%), Positives = 37/93 (39%), Gaps = 5/93 (5%) Frame = -1 Query: 406 RDHGEDGEP*GRVXGHGASQDQGHRQPHRDEER--SRRPLQLPAE--GHHVHGRRSSGCC 239 R H D +P G V G G QD+ R+ R S R LQL E G V SS Sbjct: 125 RPHVGDRDPRGGVSGGGRRQDEALRELRHGHVRSLSERLLQLSLERNGARVPSHMSSS-- 182 Query: 238 HDGWPLHRHQQLQLQVPDHGGEAQG-KAFGPDP 143 H QL G + +G A GP+P Sbjct: 183 --------HSFPQLARSQQGPQPRGPPAEGPEP 207
>RIPP_MIRJA (P21326) Antiviral protein MAP precursor (EC 3.2.2.22)| (Ribosome-inactivating protein) (rRNA N-glycosidase) Length = 278 Score = 28.9 bits (63), Expect = 9.5 Identities = 15/52 (28%), Positives = 27/52 (51%) Frame = +2 Query: 374 TSWLTVFSMVSPQL*APKNSAEMLTVAPRPSLGNPARILDWNPNLSSRVASQ 529 T+W+T +++V+PQ +A L L NP L + N+ ++VA + Sbjct: 13 TTWITWYAIVNPQ----SRAAPTLETIASLDLNNPTTYLSFITNIRTKVADK 60
>URB1_USTMA (P40349) Siderophore biosynthesis regulatory protein URBS1| Length = 950 Score = 28.9 bits (63), Expect = 9.5 Identities = 23/88 (26%), Positives = 30/88 (34%), Gaps = 5/88 (5%) Frame = -1 Query: 415 QLGRD--HGEDGEP*GRVXGHGASQDQGHRQPHRDEERSRRPLQLPAEGHHVH---GRRS 251 +LGR HGE HG S H + +R +P HH H + Sbjct: 715 RLGRSELHGESS--------HGTSNAPEHAARASASDGARLGSVVPHHHHHHHHHHANHA 766 Query: 250 SGCCHDGWPLHRHQQLQLQVPDHGGEAQ 167 S H G H H + + HG Q Sbjct: 767 SHAVHHGHHHHHHHPVTVSASSHGHAGQ 794
>PP1RA_PIG (Q767K9) Serine/threonine-protein phosphatase 1 regulatory subunit| 10 (MHC class I region proline-rich protein CAT53) (Protein FB19) Length = 925 Score = 28.9 bits (63), Expect = 9.5 Identities = 25/77 (32%), Positives = 28/77 (36%) Frame = -1 Query: 406 RDHGEDGEP*GRVXGHGASQDQGHRQPHRDEERSRRPLQLPAEGHHVHGRRSSGCCHDGW 227 R H G G GH + GH PH RP +P GH H H G Sbjct: 815 RPHEGPGGGMGAGGGHRPHEGPGHGGPH-----GHRPHDVP--GHRGHD-------HRGP 860 Query: 226 PLHRHQQLQLQVPDHGG 176 P H H+ P HGG Sbjct: 861 PPHEHR--GHDGPGHGG 875 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 66,051,885 Number of Sequences: 219361 Number of extensions: 1202314 Number of successful extensions: 3516 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 3388 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3498 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4200495993 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
