ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags35h01 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_467632.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2338 Score = 315 bits (159), Expect = 8e-83 Identities = 300/347 (86%) Strand = Plus / Minus Query: 135 ttagagcacctgcaacttactgagatgctccaggagagaggtcgccttgcgcttggctct 194 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 2077 ttagagcacctgcaacttactgagatgctccaggagagaggttgccttgcgcttggctct 2018 Query: 195 gtccgagccggtcttggacagctccgttaatggtatttgagcacccagcctccctatgca 254 ||| | |||||||||||||||||| |||| ||||||||||||||||| ||||||||| || Sbjct: 2017 gtctgtgccggtcttggacagctcagttagtggtatttgagcacccaacctccctataca 1958 Query: 255 agcgagattctgggcgtccttcttgcagagtgcaagtaaaatagccgcggcattctcctt 314 |||||| |||| || ||||||||||| || ||||| || || || || ||||||||||| Sbjct: 1957 agcgaggttctcagcatccttcttgcaaagggcaagcaagatggctgcagcattctcctt 1898 Query: 315 gttacgggcctggcttgatcttaacaaatcgatcaagaaggggatggtgtgagccttggc 374 |||||||||||| ||||| || ||||| || ||||| ||||| || | |||||||| || Sbjct: 1897 gttacgggcctgacttgacctcaacaagtctatcaaaaagggtatagcatgagccttcgc 1838 Query: 375 tatggctgttttgcactcgtggtgactcacgaggaccgacaagattgtgagcgcctcgtc 434 |||||| |||| ||||| ||||| ||||| || || ||||||||||| || || ||||| Sbjct: 1837 tatggcaattttacactcatggtggctcacaagaactgacaagattgttagtgcttcgtc 1778 Query: 435 ggtggctccagtgctggatgaatcttgcagcatctgaaccagtggtg 481 | |||||| | ||||||||||| ||||||||||||| |||||||| Sbjct: 1777 aatagctccatttctggatgaatcctgcagcatctgaatcagtggtg 1731 Score = 40.1 bits (20), Expect = 6.8 Identities = 38/44 (86%) Strand = Plus / Minus Query: 48 ttcacacgcaataacagatgagtttacaacttctcgtatgtata 91 ||||||| | |||| ||||||| ||||| ||| ||||||||||| Sbjct: 2173 ttcacactctataagagatgaggttacagcttttcgtatgtata 2130
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 315 bits (159), Expect = 8e-83 Identities = 300/347 (86%) Strand = Plus / Minus Query: 135 ttagagcacctgcaacttactgagatgctccaggagagaggtcgccttgcgcttggctct 194 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 30540647 ttagagcacctgcaacttactgagatgctccaggagagaggttgccttgcgcttggctct 30540588 Query: 195 gtccgagccggtcttggacagctccgttaatggtatttgagcacccagcctccctatgca 254 ||| | |||||||||||||||||| |||| ||||||||||||||||| ||||||||| || Sbjct: 30540587 gtctgtgccggtcttggacagctcagttagtggtatttgagcacccaacctccctataca 30540528 Query: 255 agcgagattctgggcgtccttcttgcagagtgcaagtaaaatagccgcggcattctcctt 314 |||||| |||| || ||||||||||| || ||||| || || || || ||||||||||| Sbjct: 30540527 agcgaggttctcagcatccttcttgcaaagggcaagcaagatggctgcagcattctcctt 30540468 Query: 315 gttacgggcctggcttgatcttaacaaatcgatcaagaaggggatggtgtgagccttggc 374 |||||||||||| ||||| || ||||| || ||||| ||||| || | |||||||| || Sbjct: 30540467 gttacgggcctgacttgacctcaacaagtctatcaaaaagggtatagcatgagccttcgc 30540408 Query: 375 tatggctgttttgcactcgtggtgactcacgaggaccgacaagattgtgagcgcctcgtc 434 |||||| |||| ||||| ||||| ||||| || || ||||||||||| || || ||||| Sbjct: 30540407 tatggcaattttacactcatggtggctcacaagaactgacaagattgttagtgcttcgtc 30540348 Query: 435 ggtggctccagtgctggatgaatcttgcagcatctgaaccagtggtg 481 | |||||| | ||||||||||| ||||||||||||| |||||||| Sbjct: 30540347 aatagctccatttctggatgaatcctgcagcatctgaatcagtggtg 30540301 Score = 40.1 bits (20), Expect = 6.8 Identities = 38/44 (86%) Strand = Plus / Minus Query: 48 ttcacacgcaataacagatgagtttacaacttctcgtatgtata 91 ||||||| | |||| ||||||| ||||| ||| ||||||||||| Sbjct: 30540743 ttcacactctataagagatgaggttacagcttttcgtatgtata 30540700
>dbj|AP005319.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0643A10 Length = 187931 Score = 315 bits (159), Expect = 8e-83 Identities = 300/347 (86%) Strand = Plus / Minus Query: 135 ttagagcacctgcaacttactgagatgctccaggagagaggtcgccttgcgcttggctct 194 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 52655 ttagagcacctgcaacttactgagatgctccaggagagaggttgccttgcgcttggctct 52596 Query: 195 gtccgagccggtcttggacagctccgttaatggtatttgagcacccagcctccctatgca 254 ||| | |||||||||||||||||| |||| ||||||||||||||||| ||||||||| || Sbjct: 52595 gtctgtgccggtcttggacagctcagttagtggtatttgagcacccaacctccctataca 52536 Query: 255 agcgagattctgggcgtccttcttgcagagtgcaagtaaaatagccgcggcattctcctt 314 |||||| |||| || ||||||||||| || ||||| || || || || ||||||||||| Sbjct: 52535 agcgaggttctcagcatccttcttgcaaagggcaagcaagatggctgcagcattctcctt 52476 Query: 315 gttacgggcctggcttgatcttaacaaatcgatcaagaaggggatggtgtgagccttggc 374 |||||||||||| ||||| || ||||| || ||||| ||||| || | |||||||| || Sbjct: 52475 gttacgggcctgacttgacctcaacaagtctatcaaaaagggtatagcatgagccttcgc 52416 Query: 375 tatggctgttttgcactcgtggtgactcacgaggaccgacaagattgtgagcgcctcgtc 434 |||||| |||| ||||| ||||| ||||| || || ||||||||||| || || ||||| Sbjct: 52415 tatggcaattttacactcatggtggctcacaagaactgacaagattgttagtgcttcgtc 52356 Query: 435 ggtggctccagtgctggatgaatcttgcagcatctgaaccagtggtg 481 | |||||| | ||||||||||| ||||||||||||| |||||||| Sbjct: 52355 aatagctccatttctggatgaatcctgcagcatctgaatcagtggtg 52309 Score = 40.1 bits (20), Expect = 6.8 Identities = 38/44 (86%) Strand = Plus / Minus Query: 48 ttcacacgcaataacagatgagtttacaacttctcgtatgtata 91 ||||||| | |||| ||||||| ||||| ||| ||||||||||| Sbjct: 52751 ttcacactctataagagatgaggttacagcttttcgtatgtata 52708
>dbj|AK102091.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033082P22, full insert sequence Length = 2339 Score = 315 bits (159), Expect = 8e-83 Identities = 300/347 (86%) Strand = Plus / Minus Query: 135 ttagagcacctgcaacttactgagatgctccaggagagaggtcgccttgcgcttggctct 194 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 2077 ttagagcacctgcaacttactgagatgctccaggagagaggttgccttgcgcttggctct 2018 Query: 195 gtccgagccggtcttggacagctccgttaatggtatttgagcacccagcctccctatgca 254 ||| | |||||||||||||||||| |||| ||||||||||||||||| ||||||||| || Sbjct: 2017 gtctgtgccggtcttggacagctcagttagtggtatttgagcacccaacctccctataca 1958 Query: 255 agcgagattctgggcgtccttcttgcagagtgcaagtaaaatagccgcggcattctcctt 314 |||||| |||| || ||||||||||| || ||||| || || || || ||||||||||| Sbjct: 1957 agcgaggttctcagcatccttcttgcaaagggcaagcaagatggctgcagcattctcctt 1898 Query: 315 gttacgggcctggcttgatcttaacaaatcgatcaagaaggggatggtgtgagccttggc 374 |||||||||||| ||||| || ||||| || ||||| ||||| || | |||||||| || Sbjct: 1897 gttacgggcctgacttgacctcaacaagtctatcaaaaagggtatagcatgagccttcgc 1838 Query: 375 tatggctgttttgcactcgtggtgactcacgaggaccgacaagattgtgagcgcctcgtc 434 |||||| |||| ||||| ||||| ||||| || || ||||||||||| || || ||||| Sbjct: 1837 tatggcaattttacactcatggtggctcacaagaactgacaagattgttagtgcttcgtc 1778 Query: 435 ggtggctccagtgctggatgaatcttgcagcatctgaaccagtggtg 481 | |||||| | ||||||||||| ||||||||||||| |||||||| Sbjct: 1777 aatagctccatttctggatgaatcctgcagcatctgaatcagtggtg 1731 Score = 40.1 bits (20), Expect = 6.8 Identities = 38/44 (86%) Strand = Plus / Minus Query: 48 ttcacacgcaataacagatgagtttacaacttctcgtatgtata 91 ||||||| | |||| ||||||| ||||| ||| ||||||||||| Sbjct: 2173 ttcacactctataagagatgaggttacagcttttcgtatgtata 2130
>gb|AC034254.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-257K10, complete sequence Length = 116022 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 149 acttactgagatgctccagg 168 |||||||||||||||||||| Sbjct: 68662 acttactgagatgctccagg 68643
>ref|XM_645350.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (219.t00009) partial mRNA Length = 651 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 63 agatgagtttacaacttctc 82 |||||||||||||||||||| Sbjct: 195 agatgagtttacaacttctc 214
>emb|AL157786.13| Human DNA sequence from clone RP11-324O2 on chromosome 10 Contains a guanylate cyclase type protein pseudogene, the 5' end of the FACL5 for long-chain 5 fatty-acid-Coenzyme A ligase, a novel gene, the 3' end of a novel gene and a CpG island, complete sequence Length = 122591 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 agatgctccaggagagaggt 176 |||||||||||||||||||| Sbjct: 60886 agatgctccaggagagaggt 60867
>emb|BX572593.1| Rhodopseudomonas palustris CGA009 complete genome; segment 1/16 Length = 349315 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 417 gattgtgagcgcctcgtcggtggc 440 |||||| ||||||||||||||||| Sbjct: 9595 gattgtcagcgcctcgtcggtggc 9618
>gb|AC162178.2| Mus musculus BAC clone RP23-410H21 from chromosome 6, complete sequence Length = 188061 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 149 acttactgagatgctccagg 168 |||||||||||||||||||| Sbjct: 65782 acttactgagatgctccagg 65763
>dbj|AK218666.1| Mus musculus cDNA, clone:Y2G0145O13, strand:plus, reference:ENSEMBL:Mouse-Transcript- ENST:ENSMUST00000029315, based on BLAT search Length = 179 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 379 gctgttttgcactcgtggtg 398 |||||||||||||||||||| Sbjct: 86 gctgttttgcactcgtggtg 105
>emb|AL929534.12| Mouse DNA sequence from clone RP23-275L13 on chromosome 2, complete sequence Length = 190466 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 26 acctcaacaccagcccactacttt 49 |||||||| ||||||||||||||| Sbjct: 151002 acctcaaccccagcccactacttt 151025 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,415,783 Number of Sequences: 3902068 Number of extensions: 3415783 Number of successful extensions: 58646 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 11 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 58618 Number of HSP's gapped (non-prelim): 28 length of query: 499 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 477 effective length of database: 17,147,199,772 effective search space: 8179214291244 effective search space used: 8179214291244 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
