ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags35g17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL592427.6| Human DNA sequence from clone RP11-57F5 on chrom... 46 0.038
2gb|AC093368.4| Homo sapiens chromosome 8, clone RP11-783P22, com... 40 2.4
3gb|AC104566.3| Homo sapiens chromosome 8, clone RP11-17A22, comp... 40 2.4
4gb|BT018760.1| Zea mays clone EL01N0524A08.d mRNA sequence 38 9.3
5gb|AC164303.2| Mus musculus BAC clone RP24-530J21 from chromosom... 38 9.3
6gb|AY576538.1| Yersinia ruckeri strain 150 clone iviX putative i... 38 9.3
7gb|AC125114.3| Mus musculus BAC clone RP24-254M13 from chromosom... 38 9.3
8gb|AC126026.4| Mus musculus BAC clone RP24-486A17 from chromosom... 38 9.3
9gb|AC125076.4| Mus musculus BAC clone RP23-472F9 from chromosome... 38 9.3
10gb|AC128768.4| Rattus norvegicus 1 BAC CH230-445L3 (Children's H... 38 9.3
11dbj|AK132539.1| Mus musculus 0 day neonate head cDNA, RIKEN full... 38 9.3
12gb|AE016819.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10... 38 9.3
13tpg|BK005598.1| TPA: TPA_exp: Homo sapiens NSP (NSP) gene, compl... 38 9.3
14gb|AC018690.5| Homo sapiens BAC clone RP11-527J8 from 2, complet... 38 9.3
15ref|NM_211018.1| Eremothecium gossypii AFR117Cp (AFR117C), mRNA 38 9.3
16gb|AC124613.18| Mus musculus chromosome 1, clone RP24-380F12, co... 38 9.3
17emb|AL928987.13| Mouse DNA sequence from clone RP23-55M21 on chr... 38 9.3
18gb|AC004702.1|AC004702 Homo sapiens chromosome 17, clone HRPC836... 38 9.3
19gb|AC148332.3| Mus musculus BAC clone RP23-326L8 from 6, complet... 38 9.3
20gb|AC150746.2| Mus musculus BAC clone RP23-364B18 from 6, comple... 38 9.3
21gb|AC127320.4| Mus musculus BAC clone RP23-230O23 from chromosom... 38 9.3
22gb|AC121107.19| Mus musculus chromosome 1, clone RP24-240P15, co... 38 9.3

>emb|AL592427.6| Human DNA sequence from clone RP11-57F5 on chromosome X, complete
              sequence
          Length = 140691

 Score = 46.1 bits (23), Expect = 0.038
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                         
Query: 67     aaaagtaaggaaaaggaacagagttcc 93
              |||| ||||||||||||||||||||||
Sbjct: 132559 aaaactaaggaaaaggaacagagttcc 132533



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>gb|AC093368.4| Homo sapiens chromosome 8, clone RP11-783P22, complete sequence
          Length = 158535

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 57    ccaacctgctaaaagtaaggaaaa 80
             |||||||||||||||||| |||||
Sbjct: 71939 ccaacctgctaaaagtaaagaaaa 71962



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>gb|AC104566.3| Homo sapiens chromosome 8, clone RP11-17A22, complete sequence
          Length = 115732

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 57    ccaacctgctaaaagtaaggaaaa 80
             |||||||||||||||||| |||||
Sbjct: 86830 ccaacctgctaaaagtaaagaaaa 86807



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>gb|BT018760.1| Zea mays clone EL01N0524A08.d mRNA sequence
          Length = 2110

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 102 ctcttctaggagaggcatcgcca 124
           |||||||||||||||| ||||||
Sbjct: 184 ctcttctaggagaggcttcgcca 206



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>gb|AC164303.2| Mus musculus BAC clone RP24-530J21 from chromosome 14, complete sequence
          Length = 164905

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 85     cagagttccatggagctct 103
              |||||||||||||||||||
Sbjct: 122293 cagagttccatggagctct 122275



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>gb|AY576538.1| Yersinia ruckeri strain 150 clone iviX putative inner membrane
           protein gene, partial cds
          Length = 528

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 118 atcgccaatcatgctgcta 136
           |||||||||||||||||||
Sbjct: 101 atcgccaatcatgctgcta 119



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>gb|AC125114.3| Mus musculus BAC clone RP24-254M13 from chromosome 18, complete sequence
          Length = 158836

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 65     ctaaaagtaaggaaaagga 83
              |||||||||||||||||||
Sbjct: 104813 ctaaaagtaaggaaaagga 104795



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>gb|AC126026.4| Mus musculus BAC clone RP24-486A17 from chromosome 18, complete
             sequence
          Length = 138242

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 65    ctaaaagtaaggaaaagga 83
             |||||||||||||||||||
Sbjct: 40645 ctaaaagtaaggaaaagga 40627



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>gb|AC125076.4| Mus musculus BAC clone RP23-472F9 from chromosome 2, complete sequence
          Length = 165496

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 73     aaggaaaaggaacagagtt 91
              |||||||||||||||||||
Sbjct: 111883 aaggaaaaggaacagagtt 111901



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>gb|AC128768.4| Rattus norvegicus 1 BAC CH230-445L3 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 156228

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 73    aaggaaaaggaacagagtt 91
             |||||||||||||||||||
Sbjct: 58258 aaggaaaaggaacagagtt 58240



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>dbj|AK132539.1| Mus musculus 0 day neonate head cDNA, RIKEN full-length enriched
            library, clone:4831403K05 product:hypothetical protein,
            full insert sequence
          Length = 5957

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 65   ctaaaagtaaggaaaagga 83
            |||||||||||||||||||
Sbjct: 2022 ctaaaagtaaggaaaagga 2040



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>gb|AE016819.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VI,
              complete sequence
          Length = 1813164

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 75     ggaaaaggaacagagttcc 93
              |||||||||||||||||||
Sbjct: 650262 ggaaaaggaacagagttcc 650244



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>tpg|BK005598.1| TPA: TPA_exp: Homo sapiens NSP (NSP) gene, complete cds, alternatively
              spliced
          Length = 227735

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 68     aaagtaaggaaaaggaaca 86
              |||||||||||||||||||
Sbjct: 137165 aaagtaaggaaaaggaaca 137147



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>gb|AC018690.5| Homo sapiens BAC clone RP11-527J8 from 2, complete sequence
          Length = 233117

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 73     aaggaaaaggaacagagtt 91
              |||||||||||||||||||
Sbjct: 149852 aaggaaaaggaacagagtt 149870



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>ref|NM_211018.1| Eremothecium gossypii AFR117Cp (AFR117C), mRNA
          Length = 3459

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 75 ggaaaaggaacagagttcc 93
          |||||||||||||||||||
Sbjct: 29 ggaaaaggaacagagttcc 47



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>gb|AC124613.18| Mus musculus chromosome 1, clone RP24-380F12, complete sequence
          Length = 157784

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 65     ctaaaagtaaggaaaagga 83
              |||||||||||||||||||
Sbjct: 126134 ctaaaagtaaggaaaagga 126152



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>emb|AL928987.13| Mouse DNA sequence from clone RP23-55M21 on chromosome 2, complete
              sequence
          Length = 150363

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 73     aaggaaaaggaacagagtt 91
              |||||||||||||||||||
Sbjct: 127813 aaggaaaaggaacagagtt 127795



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>gb|AC004702.1|AC004702 Homo sapiens chromosome 17, clone HRPC836L9, complete sequence
          Length = 120821

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 68    aaagtaaggaaaaggaaca 86
             |||||||||||||||||||
Sbjct: 66064 aaagtaaggaaaaggaaca 66082



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>gb|AC148332.3| Mus musculus BAC clone RP23-326L8 from 6, complete sequence
          Length = 229988

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 72    taaggaaaaggaacagagt 90
             |||||||||||||||||||
Sbjct: 24710 taaggaaaaggaacagagt 24728



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>gb|AC150746.2| Mus musculus BAC clone RP23-364B18 from 6, complete sequence
          Length = 215490

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 72     taaggaaaaggaacagagt 90
              |||||||||||||||||||
Sbjct: 161505 taaggaaaaggaacagagt 161487



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>gb|AC127320.4| Mus musculus BAC clone RP23-230O23 from chromosome 6, complete
            sequence
          Length = 197402

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 72   taaggaaaaggaacagagt 90
            |||||||||||||||||||
Sbjct: 8408 taaggaaaaggaacagagt 8390



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>gb|AC121107.19| Mus musculus chromosome 1, clone RP24-240P15, complete sequence
          Length = 155435

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 65    ctaaaagtaaggaaaagga 83
             |||||||||||||||||||
Sbjct: 27732 ctaaaagtaaggaaaagga 27750


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,664,017
Number of Sequences: 3902068
Number of extensions: 1664017
Number of successful extensions: 145573
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 145493
Number of HSP's gapped (non-prelim): 80
length of query: 189
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 167
effective length of database: 17,147,199,772
effective search space: 2863582361924
effective search space used: 2863582361924
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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