| Clone Name | rbags35g17 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AL592427.6| Human DNA sequence from clone RP11-57F5 on chromosome X, complete sequence Length = 140691 Score = 46.1 bits (23), Expect = 0.038 Identities = 26/27 (96%) Strand = Plus / Minus Query: 67 aaaagtaaggaaaaggaacagagttcc 93 |||| |||||||||||||||||||||| Sbjct: 132559 aaaactaaggaaaaggaacagagttcc 132533
>gb|AC093368.4| Homo sapiens chromosome 8, clone RP11-783P22, complete sequence Length = 158535 Score = 40.1 bits (20), Expect = 2.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 57 ccaacctgctaaaagtaaggaaaa 80 |||||||||||||||||| ||||| Sbjct: 71939 ccaacctgctaaaagtaaagaaaa 71962
>gb|AC104566.3| Homo sapiens chromosome 8, clone RP11-17A22, complete sequence Length = 115732 Score = 40.1 bits (20), Expect = 2.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 57 ccaacctgctaaaagtaaggaaaa 80 |||||||||||||||||| ||||| Sbjct: 86830 ccaacctgctaaaagtaaagaaaa 86807
>gb|BT018760.1| Zea mays clone EL01N0524A08.d mRNA sequence Length = 2110 Score = 38.2 bits (19), Expect = 9.3 Identities = 22/23 (95%) Strand = Plus / Plus Query: 102 ctcttctaggagaggcatcgcca 124 |||||||||||||||| |||||| Sbjct: 184 ctcttctaggagaggcttcgcca 206
>gb|AC164303.2| Mus musculus BAC clone RP24-530J21 from chromosome 14, complete sequence Length = 164905 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 85 cagagttccatggagctct 103 ||||||||||||||||||| Sbjct: 122293 cagagttccatggagctct 122275
>gb|AY576538.1| Yersinia ruckeri strain 150 clone iviX putative inner membrane protein gene, partial cds Length = 528 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 118 atcgccaatcatgctgcta 136 ||||||||||||||||||| Sbjct: 101 atcgccaatcatgctgcta 119
>gb|AC125114.3| Mus musculus BAC clone RP24-254M13 from chromosome 18, complete sequence Length = 158836 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 65 ctaaaagtaaggaaaagga 83 ||||||||||||||||||| Sbjct: 104813 ctaaaagtaaggaaaagga 104795
>gb|AC126026.4| Mus musculus BAC clone RP24-486A17 from chromosome 18, complete sequence Length = 138242 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 65 ctaaaagtaaggaaaagga 83 ||||||||||||||||||| Sbjct: 40645 ctaaaagtaaggaaaagga 40627
>gb|AC125076.4| Mus musculus BAC clone RP23-472F9 from chromosome 2, complete sequence Length = 165496 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 73 aaggaaaaggaacagagtt 91 ||||||||||||||||||| Sbjct: 111883 aaggaaaaggaacagagtt 111901
>gb|AC128768.4| Rattus norvegicus 1 BAC CH230-445L3 (Children's Hospital Oakland Research Institute) complete sequence Length = 156228 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 73 aaggaaaaggaacagagtt 91 ||||||||||||||||||| Sbjct: 58258 aaggaaaaggaacagagtt 58240
>dbj|AK132539.1| Mus musculus 0 day neonate head cDNA, RIKEN full-length enriched library, clone:4831403K05 product:hypothetical protein, full insert sequence Length = 5957 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 65 ctaaaagtaaggaaaagga 83 ||||||||||||||||||| Sbjct: 2022 ctaaaagtaaggaaaagga 2040
>gb|AE016819.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VI, complete sequence Length = 1813164 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 75 ggaaaaggaacagagttcc 93 ||||||||||||||||||| Sbjct: 650262 ggaaaaggaacagagttcc 650244
>tpg|BK005598.1| TPA: TPA_exp: Homo sapiens NSP (NSP) gene, complete cds, alternatively spliced Length = 227735 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 68 aaagtaaggaaaaggaaca 86 ||||||||||||||||||| Sbjct: 137165 aaagtaaggaaaaggaaca 137147
>gb|AC018690.5| Homo sapiens BAC clone RP11-527J8 from 2, complete sequence Length = 233117 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 73 aaggaaaaggaacagagtt 91 ||||||||||||||||||| Sbjct: 149852 aaggaaaaggaacagagtt 149870
>ref|NM_211018.1| Eremothecium gossypii AFR117Cp (AFR117C), mRNA Length = 3459 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 75 ggaaaaggaacagagttcc 93 ||||||||||||||||||| Sbjct: 29 ggaaaaggaacagagttcc 47
>gb|AC124613.18| Mus musculus chromosome 1, clone RP24-380F12, complete sequence Length = 157784 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 65 ctaaaagtaaggaaaagga 83 ||||||||||||||||||| Sbjct: 126134 ctaaaagtaaggaaaagga 126152
>emb|AL928987.13| Mouse DNA sequence from clone RP23-55M21 on chromosome 2, complete sequence Length = 150363 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 73 aaggaaaaggaacagagtt 91 ||||||||||||||||||| Sbjct: 127813 aaggaaaaggaacagagtt 127795
>gb|AC004702.1|AC004702 Homo sapiens chromosome 17, clone HRPC836L9, complete sequence Length = 120821 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 68 aaagtaaggaaaaggaaca 86 ||||||||||||||||||| Sbjct: 66064 aaagtaaggaaaaggaaca 66082
>gb|AC148332.3| Mus musculus BAC clone RP23-326L8 from 6, complete sequence Length = 229988 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 72 taaggaaaaggaacagagt 90 ||||||||||||||||||| Sbjct: 24710 taaggaaaaggaacagagt 24728
>gb|AC150746.2| Mus musculus BAC clone RP23-364B18 from 6, complete sequence Length = 215490 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 72 taaggaaaaggaacagagt 90 ||||||||||||||||||| Sbjct: 161505 taaggaaaaggaacagagt 161487
>gb|AC127320.4| Mus musculus BAC clone RP23-230O23 from chromosome 6, complete sequence Length = 197402 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 72 taaggaaaaggaacagagt 90 ||||||||||||||||||| Sbjct: 8408 taaggaaaaggaacagagt 8390
>gb|AC121107.19| Mus musculus chromosome 1, clone RP24-240P15, complete sequence Length = 155435 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 65 ctaaaagtaaggaaaagga 83 ||||||||||||||||||| Sbjct: 27732 ctaaaagtaaggaaaagga 27750 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,664,017 Number of Sequences: 3902068 Number of extensions: 1664017 Number of successful extensions: 145573 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 22 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 145493 Number of HSP's gapped (non-prelim): 80 length of query: 189 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 167 effective length of database: 17,147,199,772 effective search space: 2863582361924 effective search space used: 2863582361924 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)