ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags35g09 |
|---|---|
| Clone Library Name | barley_pub |
>COPD_ORYSA (P49661) Coatomer subunit delta (Delta-coat protein) (Delta-COP)| (Archain) Length = 518 Score = 254 bits (648), Expect = 1e-67 Identities = 122/146 (83%), Positives = 135/146 (92%) Frame = -2 Query: 556 IQGMNESNLXLSVNCWPSVSGNETYVNIEYEASEMFDLNNVVISIPLPALREAPTVKQID 377 IQ +NES+L L+VNCWPSVSGNETYVNIEYEASEMFDL+NVVISIPLPALREAP V+QID Sbjct: 373 IQELNESSLPLAVNCWPSVSGNETYVNIEYEASEMFDLHNVVISIPLPALREAPGVRQID 432 Query: 376 GEWKYDSRNSVLEWSIILIDQSNRSGSMEFIVPPADPSTFFPISIGFGASNTFSDLKVTG 197 GEW+YDSRNSVLEWSIIL+DQSNRSGS+EF VP ADPSTFFPIS+GF ASNTFSDLKVT Sbjct: 433 GEWRYDSRNSVLEWSIILVDQSNRSGSLEFTVPAADPSTFFPISVGFSASNTFSDLKVTA 492 Query: 196 IHPLKEGNPPKYSQRVRLVAANYQIV 119 I PL+EG+PPK+SQR RLV NYQ+V Sbjct: 493 IRPLREGSPPKFSQRNRLVTYNYQVV 518
>COPD_RAT (Q66H80) Coatomer subunit delta (Delta-coat protein) (Delta-COP)| (Archain) Length = 511 Score = 124 bits (312), Expect = 1e-28 Identities = 60/147 (40%), Positives = 95/147 (64%), Gaps = 1/147 (0%) Frame = -2 Query: 556 IQGMNESNLXLSVNCWPSVSGNETYVNIEYEASE-MFDLNNVVISIPLPALREAPTVKQI 380 +Q ES + L++NCWPS SGN VNIEYE E +LN+VVI+IPLP+ AP + +I Sbjct: 366 LQTTEESFIPLTINCWPSESGNGCDVNIEYELQEDNLELNDVVITIPLPSGVGAPVIGEI 425 Query: 379 DGEWKYDSRNSVLEWSIILIDQSNRSGSMEFIVPPADPSTFFPISIGFGASNTFSDLKVT 200 DGE+++DSR + LEW + +ID N+SGS+EF + P P+ FFP+ + F + + +++VT Sbjct: 426 DGEYRHDSRRNTLEWCLPVIDAKNKSGSLEFSI-PGQPNDFFPVQVSFISKKNYCNIQVT 484 Query: 199 GIHPLKEGNPPKYSQRVRLVAANYQIV 119 + + +P ++S + Y+I+ Sbjct: 485 KVTQVDGNSPVRFSTETTFLVDKYEIL 511
>COPD_MOUSE (Q5XJY5) Coatomer subunit delta (Delta-coat protein) (Delta-COP)| (Archain) Length = 511 Score = 124 bits (312), Expect = 1e-28 Identities = 60/147 (40%), Positives = 95/147 (64%), Gaps = 1/147 (0%) Frame = -2 Query: 556 IQGMNESNLXLSVNCWPSVSGNETYVNIEYEASE-MFDLNNVVISIPLPALREAPTVKQI 380 +Q ES + L++NCWPS SGN VNIEYE E +LN+VVI+IPLP+ AP + +I Sbjct: 366 LQTTEESFIPLTINCWPSESGNGCDVNIEYELQEDNLELNDVVITIPLPSGVGAPVIGEI 425 Query: 379 DGEWKYDSRNSVLEWSIILIDQSNRSGSMEFIVPPADPSTFFPISIGFGASNTFSDLKVT 200 DGE+++DSR + LEW + +ID N+SGS+EF + P P+ FFP+ + F + + +++VT Sbjct: 426 DGEYRHDSRRNTLEWCLPVIDAKNKSGSLEFSI-PGQPNDFFPVQVSFISKKNYCNIQVT 484 Query: 199 GIHPLKEGNPPKYSQRVRLVAANYQIV 119 + + +P ++S + Y+I+ Sbjct: 485 KVTQVDGNSPVRFSTETTFLVDKYEIL 511
>COPD_CHICK (Q5ZL57) Coatomer subunit delta (Delta-coat protein) (Delta-COP)| (Archain) Length = 510 Score = 122 bits (306), Expect = 7e-28 Identities = 59/147 (40%), Positives = 94/147 (63%), Gaps = 1/147 (0%) Frame = -2 Query: 556 IQGMNESNLXLSVNCWPSVSGNETYVNIEYEASE-MFDLNNVVISIPLPALREAPTVKQI 380 +Q ES + L++NCWPS SGN VNIEYE E +LN+VVI IPLP+ AP + +I Sbjct: 365 LQTTEESFIPLTINCWPSESGNSCDVNIEYELQEESLELNDVVIMIPLPSGVGAPVIGEI 424 Query: 379 DGEWKYDSRNSVLEWSIILIDQSNRSGSMEFIVPPADPSTFFPISIGFGASNTFSDLKVT 200 DGE+++DSR ++LEW + +ID N+SGS+EF + P+ FFP+ + F + + +++VT Sbjct: 425 DGEYRHDSRRNLLEWCLPVIDAKNKSGSLEFSI-AGQPNDFFPVQVSFISKKNYCNIQVT 483 Query: 199 GIHPLKEGNPPKYSQRVRLVAANYQIV 119 + + +P ++S + Y+I+ Sbjct: 484 KVTQVDGNSPVRFSTETTFLVDKYEIL 510
>COPD_PONPY (Q5RA77) Coatomer subunit delta (Delta-coat protein) (Delta-COP)| (Archain) Length = 511 Score = 122 bits (305), Expect = 9e-28 Identities = 59/147 (40%), Positives = 94/147 (63%), Gaps = 1/147 (0%) Frame = -2 Query: 556 IQGMNESNLXLSVNCWPSVSGNETYVNIEYEASE-MFDLNNVVISIPLPALREAPTVKQI 380 +Q ES + L++NCWPS SGN VNIEYE E +LN+VVI+IPLP+ AP + +I Sbjct: 366 LQTTEESFIPLTINCWPSESGNGCDVNIEYELQEDNLELNDVVITIPLPSGVGAPVIGEI 425 Query: 379 DGEWKYDSRNSVLEWSIILIDQSNRSGSMEFIVPPADPSTFFPISIGFGASNTFSDLKVT 200 DGE+++DSR + LEW + +ID N+SGS+EF + P+ FFP+ + F + + +++VT Sbjct: 426 DGEYRHDSRRNTLEWCLPVIDAKNKSGSLEFSI-AGQPNDFFPVQVSFVSKKNYCNIQVT 484 Query: 199 GIHPLKEGNPPKYSQRVRLVAANYQIV 119 + + +P ++S + Y+I+ Sbjct: 485 KVTQVDGNSPVRFSTETTFLVDKYEIL 511
>COPD_HUMAN (P48444) Coatomer subunit delta (Delta-coat protein) (Delta-COP)| (Archain) Length = 511 Score = 122 bits (305), Expect = 9e-28 Identities = 59/147 (40%), Positives = 94/147 (63%), Gaps = 1/147 (0%) Frame = -2 Query: 556 IQGMNESNLXLSVNCWPSVSGNETYVNIEYEASE-MFDLNNVVISIPLPALREAPTVKQI 380 +Q ES + L++NCWPS SGN VNIEYE E +LN+VVI+IPLP+ AP + +I Sbjct: 366 LQTTEESFIPLTINCWPSESGNGCDVNIEYELQEDNLELNDVVITIPLPSGVGAPVIGEI 425 Query: 379 DGEWKYDSRNSVLEWSIILIDQSNRSGSMEFIVPPADPSTFFPISIGFGASNTFSDLKVT 200 DGE+++DSR + LEW + +ID N+SGS+EF + P+ FFP+ + F + + +++VT Sbjct: 426 DGEYRHDSRRNTLEWCLPVIDAKNKSGSLEFSI-AGQPNDFFPVQVSFVSKKNYCNIQVT 484 Query: 199 GIHPLKEGNPPKYSQRVRLVAANYQIV 119 + + +P ++S + Y+I+ Sbjct: 485 KVTQVDGNSPVRFSTETTFLVDKYEIL 511
>COPD_BOVIN (P53619) Coatomer subunit delta (Delta-coat protein) (Delta-COP)| (Archain) Length = 511 Score = 121 bits (304), Expect = 1e-27 Identities = 59/147 (40%), Positives = 94/147 (63%), Gaps = 1/147 (0%) Frame = -2 Query: 556 IQGMNESNLXLSVNCWPSVSGNETYVNIEYEASE-MFDLNNVVISIPLPALREAPTVKQI 380 +Q ES + L++NCWPS SGN VNIEYE E +LN+VVI+IPLP+ AP + +I Sbjct: 366 LQTTEESFIPLTINCWPSESGNGCDVNIEYELQEDNLELNDVVITIPLPSGVGAPVIGEI 425 Query: 379 DGEWKYDSRNSVLEWSIILIDQSNRSGSMEFIVPPADPSTFFPISIGFGASNTFSDLKVT 200 DGE+++DSR + LEW + +ID N+SGS+EF + P+ FFP+ + F + + +++VT Sbjct: 426 DGEYRHDSRRNTLEWCLPVIDAKNKSGSLEFSI-AGQPNDFFPVQVSFISKKNYCNIQVT 484 Query: 199 GIHPLKEGNPPKYSQRVRLVAANYQIV 119 + + +P ++S + Y+I+ Sbjct: 485 KVTQVDGNSPVRFSTETTFLVDKYEIL 511
>COPD_CAEEL (Q09236) Probable coatomer subunit delta (Delta-coat protein)| (Delta-COP) Length = 515 Score = 106 bits (264), Expect = 5e-23 Identities = 58/142 (40%), Positives = 81/142 (57%), Gaps = 1/142 (0%) Frame = -2 Query: 541 ESNLXLSVNCWPSVSGNETYVNIEYEAS-EMFDLNNVVISIPLPALREAPTVKQIDGEWK 365 E L +S NCWP S + VNIEY E LNNV I +PLP AP+V + DGE++ Sbjct: 376 EEQLPISFNCWPQESSDGVQVNIEYTLQREDITLNNVRIIVPLPTAT-APSVGECDGEYE 434 Query: 364 YDSRNSVLEWSIILIDQSNRSGSMEFIVPPADPSTFFPISIGFGASNTFSDLKVTGIHPL 185 Y +V+ WS+ +ID SN SG++EF VP FFP+S+GF + N F + V + Sbjct: 435 YHKTKNVIVWSLAVIDSSNSSGTLEFSVPNGHCDHFFPVSVGFTSENLFVPITVQKV-VK 493 Query: 184 KEGNPPKYSQRVRLVAANYQIV 119 +G+P YS + N++IV Sbjct: 494 NDGSPVTYSVETTFNSENFEIV 515
>YDHK_SALTY (Q8ZPN4) Hypothetical transport protein ydhK| Length = 679 Score = 32.3 bits (72), Expect = 0.92 Identities = 12/29 (41%), Positives = 18/29 (62%) Frame = -2 Query: 430 ISIPLPALREAPTVKQIDGEWKYDSRNSV 344 + + LPALR P K G+W+Y RN++ Sbjct: 1 MKLSLPALRNTPWFKATSGQWRYALRNTI 29
>YDHK_SALTI (Q8Z6P7) Hypothetical transport protein ydhK| Length = 679 Score = 32.3 bits (72), Expect = 0.92 Identities = 12/29 (41%), Positives = 18/29 (62%) Frame = -2 Query: 430 ISIPLPALREAPTVKQIDGEWKYDSRNSV 344 + + LPALR P K G+W+Y RN++ Sbjct: 1 MKLSLPALRNTPWFKATSGQWRYALRNTI 29
>AP1M1_HUMAN (Q9BXS5) AP-1 complex subunit mu-1 (Adaptor-related protein complex| 1 mu-1 subunit) (Mu-adaptin 1) (Adaptor protein complex AP-1 mu-1 subunit) (Golgi adaptor HA1/AP1 adaptin mu-1 subunit) (Clathrin assembly protein assembly protein complex 1 Length = 422 Score = 32.3 bits (72), Expect = 0.92 Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 6/65 (9%) Frame = -2 Query: 505 SVSGNETYVNIEY--EASEMFD----LNNVVISIPLPALREAPTVKQIDGEWKYDSRNSV 344 SV ++ IEY +A F NNV I IP+P ++P K G K+ NS Sbjct: 280 SVIEKHSHSRIEYMIKAKSQFKRRSTANNVEIHIPVPNDADSPKFKTTVGSVKWVPENSE 339 Query: 343 LEWSI 329 + WSI Sbjct: 340 IVWSI 344
>AP1M_CAEEL (P35602) AP-1 complex subunit mu (Clathrin coat assembly protein| AP47) (Clathrin coat-associated protein AP47) (Golgi adaptor AP-1 47 kDa protein) (HA1 47 kDa subunit) (Clathrin assembly protein assembly protein complex 1 medium chain) (Uncoor Length = 422 Score = 32.0 bits (71), Expect = 1.2 Identities = 18/54 (33%), Positives = 26/54 (48%) Frame = -2 Query: 442 NNVVISIPLPALREAPTVKQIDGEWKYDSRNSVLEWSIILIDQSNRSGSMEFIV 281 NNV I IP+P+ ++P K G KY S W+I N G E+++ Sbjct: 307 NNVEIIIPVPSDADSPKFKTSIGSVKYTPEQSAFVWTI-----KNFPGGKEYLL 355
>AP1M1_MOUSE (P35585) AP-1 complex subunit mu-1 (Adaptor-related protein complex| 1 mu-1 subunit) (Mu-adaptin 1) (Adaptor protein complex AP-1 mu-1 subunit) (Golgi adaptor HA1/AP1 adaptin mu-1 subunit) (Clathrin assembly protein assembly protein complex 1 Length = 422 Score = 32.0 bits (71), Expect = 1.2 Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 6/65 (9%) Frame = -2 Query: 505 SVSGNETYVNIEY--EASEMFD----LNNVVISIPLPALREAPTVKQIDGEWKYDSRNSV 344 SV ++ IEY +A F NNV I IP+P ++P K G K+ NS Sbjct: 280 SVIEKHSHSRIEYMVKAKSQFKRRSTANNVEIHIPVPNDADSPKFKTTVGSVKWVPENSE 339 Query: 343 LEWSI 329 + WS+ Sbjct: 340 IVWSV 344
>AP1M2_MOUSE (Q9WVP1) AP-1 complex subunit mu-2 (Adaptor-related protein complex| 1 mu-2 subunit) (Mu-adaptin 2) (Adaptor protein complex AP-1 mu-2 subunit) (Golgi adaptor HA1/AP1 adaptin mu-2 subunit) (Clathrin assembly protein assembly protein complex 1 Length = 423 Score = 31.6 bits (70), Expect = 1.6 Identities = 15/38 (39%), Positives = 22/38 (57%) Frame = -2 Query: 442 NNVVISIPLPALREAPTVKQIDGEWKYDSRNSVLEWSI 329 N V IS+P+P+ ++P K G KY +V+ WSI Sbjct: 308 NGVEISVPVPSDADSPRFKTSVGSAKYVPEKNVVIWSI 345
>AP1M2_HUMAN (Q9Y6Q5) AP-1 complex subunit mu-2 (Adaptor-related protein complex| 1 mu-2 subunit) (Mu-adaptin 2) (Adaptor protein complex AP-1 mu-2 subunit) (Golgi adaptor HA1/AP1 adaptin mu-2 subunit) (Clathrin assembly protein assembly protein complex 1 Length = 423 Score = 31.6 bits (70), Expect = 1.6 Identities = 15/38 (39%), Positives = 22/38 (57%) Frame = -2 Query: 442 NNVVISIPLPALREAPTVKQIDGEWKYDSRNSVLEWSI 329 N V IS+P+P+ ++P K G KY +V+ WSI Sbjct: 308 NGVEISVPVPSDADSPRFKTSVGSAKYVPERNVVIWSI 345
>AP1M1_YEAST (Q00776) AP-1 complex subunit mu-1 (Mu(1)-adaptin) (Clathrin| assembly protein complex 1 medium chain) (Clathrin coat assembly protein AP54) (Clathrin coat-associated protein AP54) (Golgi adaptor AP-1 54 kDa protein) (HA1 54 kDa subunit) Length = 475 Score = 30.0 bits (66), Expect = 4.6 Identities = 15/37 (40%), Positives = 18/37 (48%) Frame = -2 Query: 439 NVVISIPLPALREAPTVKQIDGEWKYDSRNSVLEWSI 329 NV I IP+P + PT K G KY S + W I Sbjct: 348 NVEILIPVPDDADTPTFKYSHGSLKYVPEKSAILWKI 384
>SRP72_SCHPO (O59787) Signal recognition particle 72 kDa protein homolog (SRP72)| Length = 561 Score = 29.6 bits (65), Expect = 6.0 Identities = 14/51 (27%), Positives = 25/51 (49%) Frame = -3 Query: 465 RPQRCLT*TMLSYQFLCLHFGRLQPLNRLMESGSMTLETLYWNGPLSLLIS 313 + Q C +L + L H P++ + + S+ + L W GP+S L+S Sbjct: 401 KQQSCEAKLLLCTRSLLAHLDERAPVSTIQDDMSVIDDLLQWKGPISELVS 451
>BCSA2_ACEXY (O82859) Cellulose synthase catalytic subunit [UDP-forming] (EC| 2.4.1.12) Length = 756 Score = 29.3 bits (64), Expect = 7.8 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 4/61 (6%) Frame = -2 Query: 541 ESNLXLSVNCWPSVSGNETYVNIEYEASEMFDLNNVVISIPLPALREAPTVKQI----DG 374 E+++ ++V P+ TY N + ++ + V + IPLP + P K+I DG Sbjct: 584 EAHIPVTVYDAPAEGQPHTYYNATHGMTQDVSMGGVAVHIPLPDVTTGPVKKRIHAVLDG 643 Query: 373 E 371 E Sbjct: 644 E 644 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 82,184,475 Number of Sequences: 219361 Number of extensions: 1719169 Number of successful extensions: 3737 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 3655 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3729 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4528412720 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
