ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal2d11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK059404.1| Oryza sativa (japonica cultivar-group) cDNA clon... 137 5e-29
2ref|XM_473782.1| Oryza sativa (japonica cultivar-group), predic... 135 2e-28
3dbj|AK100301.1| Oryza sativa (japonica cultivar-group) cDNA clon... 135 2e-28
4dbj|AK072200.1| Oryza sativa (japonica cultivar-group) cDNA clon... 135 2e-28
5emb|AL606638.2|OSJN00077 Oryza sativa genomic DNA, chromosome 4,... 100 1e-17
6dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 100 1e-17
7dbj|AK073515.1| Oryza sativa (japonica cultivar-group) cDNA clon... 100 1e-17
8ref|XM_480915.1| Oryza sativa (japonica cultivar-group), mRNA 62 2e-06
9dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 62 2e-06
10dbj|AP005249.3| Oryza sativa (japonica cultivar-group) genomic D... 62 2e-06
11dbj|AP004657.2| Oryza sativa (japonica cultivar-group) genomic D... 62 2e-06
12dbj|AK120070.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 6e-04
13gb|AC074191.3| Homo sapiens chromosome 11 clone RP11-502G22, com... 44 0.57
14emb|BX119977.10| Zebrafish DNA sequence from clone CH211-198A3 i... 44 0.57
15emb|AL662893.12| Mouse DNA sequence from clone RP23-202G21 on ch... 44 0.57
16gb|AC122239.4| Mus musculus BAC clone RP23-143K14 from chromosom... 42 2.2
17emb|AL157364.15| Human DNA sequence from clone RP11-31H2 on chro... 42 2.2
18gb|AC153013.3| Mus musculus BAC clone RP23-273N8 from chromosome... 42 2.2
19dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.2
20dbj|AP005412.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.2
21dbj|AB112588.1| Satsuma dwarf virus CP gene for coat proteins, p... 42 2.2
22gb|AC102414.8| Mus musculus chromosome 15, clone RP24-474D5, com... 40 8.9
23gb|AC131191.4| Mus musculus BAC clone RP24-464B16 from chromosom... 40 8.9
24gb|AC130714.3| Mus musculus BAC clone RP23-367L18 from chromosom... 40 8.9
25emb|Z98533.1|SPAC6F12 S.pombe chromosome I cosmid c6F12 40 8.9
26gb|AF214671.8| Homo sapiens chromosome 8 clone GS1-42F21 map 8qt... 40 8.9
27gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome 40 8.9
28gb|AC105218.4| Homo sapiens chromosome 8, clone RP11-410F13, com... 40 8.9
29gb|AC097535.3| Homo sapiens BAC clone RP11-802H3 from 4, complet... 40 8.9
30gb|AC021500.6| Homo sapiens chromosome 8, clone RP11-135K1, comp... 40 8.9
31dbj|AB169825.1| Macaca fascicularis brain cDNA, clone: QflA-1293... 40 8.9
32gb|AC153359.4| Mus musculus BAC clone RP23-477I1 from chromosome... 40 8.9
33ref|NM_001018732.1| Schizosaccharomyces pombe 972h- hypothetical... 40 8.9
34gb|AC103777.14| Homo sapiens chromosome 8, clone RP11-460G23, co... 40 8.9
35gb|AE004577.1| Pseudomonas aeruginosa PAO1, section 138 of 529 o... 40 8.9
36gb|AC027653.3| Mus musculus strain C57BL6/J chromosome 5 clone R... 40 8.9
37gb|AC090644.2| Homo sapiens chromosome 3 clone RP11-322M13 map 3... 40 8.9
38emb|CR848035.7| Zebrafish DNA sequence from clone CH211-203J1 in... 40 8.9
39gb|AY104424.1| Zea mays PCO061312 mRNA sequence 40 8.9
40dbj|AP001972.4| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 8.9
41gb|AC064793.3| Mus musculus strain C57BL6/J chromosome 5 clone R... 40 8.9
42dbj|AP005713.2| Homo sapiens genomic DNA, chromosome 8q24, clone... 40 8.9
43emb|AL929277.9| Mouse DNA sequence from clone RP23-153J22 on chr... 40 8.9
44gb|AC158142.19| Mus musculus chromosome 15, clone RP24-342H15, c... 40 8.9
45dbj|AB027847.1| Schizosaccharomyces pombe gene for Putative heli... 40 8.9 
>dbj|AK059404.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-027-B09, full
           insert sequence
          Length = 694

 Score =  137 bits (69), Expect = 5e-29
 Identities = 123/141 (87%)
 Strand = Plus / Minus

                                                                       
Query: 204 ggcgacggatttgcagatggggcaccagttcttctgccggagccagtgctgtatgcaggt 263
           |||||||||||| || ||||| ||||||||||||||||||||||||| || |||||||| 
Sbjct: 575 ggcgacggatttacaaatgggacaccagttcttctgccggagccagttctttatgcagga 516

                                                                       
Query: 264 gatgtggtagtagtgcttacacgccatgttccccacctcctcaccaccagagtactcctc 323
           || ||||||||| || || ||  |||| || ||||||||||||||| | || || |||||
Sbjct: 515 gaagtggtagtaatgtttgcagaccatcttgcccacctcctcaccatctgaatattcctc 456

                                
Query: 324 ctggcatatgctgcattttct 344
           |||||||||||||||||||||
Sbjct: 455 ctggcatatgctgcattttct 435



 Score =  109 bits (55), Expect = 1e-20
 Identities = 148/179 (82%)
 Strand = Plus / Minus

                                                                       
Query: 400 cacttgtacagcgcgtcctctgaaagcccggtgttcaccgtgccgatccggtcacccaac 459
           |||||| |||||||||| |||||||| || ||| | || ||||| || |  || ||||| 
Sbjct: 379 cacttggacagcgcgtcttctgaaaggccagtgcttacggtgccaattctatctcccaat 320

                                                                       
Query: 460 gcgagcaattcctcgtaggacatgccgtcgatgtccatcctcatcgcccggtgccgatca 519
           || ||||||||||| || ||||||||||| |||||||| |||||| | | || |||||||
Sbjct: 319 gctagcaattcctcataagacatgccgtcaatgtccattctcatccctctgtaccgatca 260

                                                                      
Query: 520 ctgagcatgaagtagttctccagctcttcactgccttcgacgtcgaagcgccagtaccc 578
            |||  |||||||||||||| ||||||||||| ||||| |  | |||||||||||||||
Sbjct: 259 ttgaatatgaagtagttctcaagctcttcactcccttccatattgaagcgccagtaccc 201
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>ref|XM_473782.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1104

 Score =  135 bits (68), Expect = 2e-28
 Identities = 122/140 (87%)
 Strand = Plus / Minus

                                                                        
Query: 205  gcgacggatttgcagatggggcaccagttcttctgccggagccagtgctgtatgcaggtg 264
            ||||||||||| || ||||| ||||||||||||||||||||||||| || |||||||| |
Sbjct: 1088 gcgacggatttacaaatgggacaccagttcttctgccggagccagttctttatgcaggag 1029

                                                                        
Query: 265  atgtggtagtagtgcttacacgccatgttccccacctcctcaccaccagagtactcctcc 324
            | ||||||||| || || ||  |||| || ||||||||||||||| | || || ||||||
Sbjct: 1028 aagtggtagtaatgtttgcagaccatcttgcccacctcctcaccatctgaatattcctcc 969

                                
Query: 325  tggcatatgctgcattttct 344
            ||||||||||||||||||||
Sbjct: 968  tggcatatgctgcattttct 949



 Score =  109 bits (55), Expect = 1e-20
 Identities = 148/179 (82%)
 Strand = Plus / Minus

                                                                       
Query: 400 cacttgtacagcgcgtcctctgaaagcccggtgttcaccgtgccgatccggtcacccaac 459
           |||||| |||||||||| |||||||| || ||| | || ||||| || |  || ||||| 
Sbjct: 893 cacttggacagcgcgtcttctgaaaggccagtgcttacggtgccaattctatctcccaat 834

                                                                       
Query: 460 gcgagcaattcctcgtaggacatgccgtcgatgtccatcctcatcgcccggtgccgatca 519
           || ||||||||||| || ||||||||||| |||||||| |||||| | | || |||||||
Sbjct: 833 gctagcaattcctcataagacatgccgtcaatgtccattctcatccctctgtaccgatca 774

                                                                      
Query: 520 ctgagcatgaagtagttctccagctcttcactgccttcgacgtcgaagcgccagtaccc 578
            |||  |||||||||||||| ||||||||||| ||||| |  | |||||||||||||||
Sbjct: 773 ttgaatatgaagtagttctcaagctcttcacttccttccatattgaagcgccagtaccc 715
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>dbj|AK100301.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023077P18, full
            insert sequence
          Length = 1493

 Score =  135 bits (68), Expect = 2e-28
 Identities = 122/140 (87%)
 Strand = Plus / Minus

                                                                        
Query: 205  gcgacggatttgcagatggggcaccagttcttctgccggagccagtgctgtatgcaggtg 264
            ||||||||||| || ||||| ||||||||||||||||||||||||| || |||||||| |
Sbjct: 1243 gcgacggatttacaaatgggacaccagttcttctgccggagccagttctttatgcaggag 1184

                                                                        
Query: 265  atgtggtagtagtgcttacacgccatgttccccacctcctcaccaccagagtactcctcc 324
            | ||||||||| || || ||  |||| || ||||||||||||||| | || || ||||||
Sbjct: 1183 aagtggtagtaatgtttgcagaccatcttgcccacctcctcaccatctgaatattcctcc 1124

                                
Query: 325  tggcatatgctgcattttct 344
            ||||||||||||||||||||
Sbjct: 1123 tggcatatgctgcattttct 1104



 Score =  109 bits (55), Expect = 1e-20
 Identities = 148/179 (82%)
 Strand = Plus / Minus

                                                                        
Query: 400  cacttgtacagcgcgtcctctgaaagcccggtgttcaccgtgccgatccggtcacccaac 459
            |||||| |||||||||| |||||||| || ||| | || ||||| || |  || ||||| 
Sbjct: 1048 cacttggacagcgcgtcttctgaaaggccagtgcttacggtgccaattctatctcccaat 989

                                                                        
Query: 460  gcgagcaattcctcgtaggacatgccgtcgatgtccatcctcatcgcccggtgccgatca 519
            || ||||||||||| || ||||||||||| |||||||| |||||| | | || |||||||
Sbjct: 988  gctagcaattcctcataagacatgccgtcaatgtccattctcatccctctgtaccgatca 929

                                                                       
Query: 520  ctgagcatgaagtagttctccagctcttcactgccttcgacgtcgaagcgccagtaccc 578
             |||  |||||||||||||| ||||||||||| ||||| |  | |||||||||||||||
Sbjct: 928  ttgaatatgaagtagttctcaagctcttcacttccttccatattgaagcgccagtaccc 870
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>dbj|AK072200.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013160D07, full
            insert sequence
          Length = 1363

 Score =  135 bits (68), Expect = 2e-28
 Identities = 122/140 (87%)
 Strand = Plus / Minus

                                                                        
Query: 205  gcgacggatttgcagatggggcaccagttcttctgccggagccagtgctgtatgcaggtg 264
            ||||||||||| || ||||| ||||||||||||||||||||||||| || |||||||| |
Sbjct: 1243 gcgacggatttacaaatgggacaccagttcttctgccggagccagttctttatgcaggag 1184

                                                                        
Query: 265  atgtggtagtagtgcttacacgccatgttccccacctcctcaccaccagagtactcctcc 324
            | ||||||||| || || ||  |||| || ||||||||||||||| | || || ||||||
Sbjct: 1183 aagtggtagtaatgtttgcagaccatcttgcccacctcctcaccatctgaatattcctcc 1124

                                
Query: 325  tggcatatgctgcattttct 344
            ||||||||||||||||||||
Sbjct: 1123 tggcatatgctgcattttct 1104



 Score =  109 bits (55), Expect = 1e-20
 Identities = 148/179 (82%)
 Strand = Plus / Minus

                                                                        
Query: 400  cacttgtacagcgcgtcctctgaaagcccggtgttcaccgtgccgatccggtcacccaac 459
            |||||| |||||||||| |||||||| || ||| | || ||||| || |  || ||||| 
Sbjct: 1048 cacttggacagcgcgtcttctgaaaggccagtgcttacggtgccaattctatctcccaat 989

                                                                        
Query: 460  gcgagcaattcctcgtaggacatgccgtcgatgtccatcctcatcgcccggtgccgatca 519
            || ||||||||||| || ||||||||||| |||||||| |||||| | | || |||||||
Sbjct: 988  gctagcaattcctcataagacatgccgtcaatgtccattctcatccctctgtaccgatca 929

                                                                       
Query: 520  ctgagcatgaagtagttctccagctcttcactgccttcgacgtcgaagcgccagtaccc 578
             |||  |||||||||||||| ||||||||||| ||||| |  | |||||||||||||||
Sbjct: 928  ttgaatatgaagtagttctcaagctcttcacttccttccatattgaagcgccagtaccc 870
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>emb|AL606638.2|OSJN00077 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0041A02,
              complete sequence
          Length = 166804

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 104/122 (85%)
 Strand = Plus / Plus

                                                                          
Query: 205    gcgacggatttgcagatggggcaccagttcttctgccggagccagtgctgtatgcaggtg 264
              ||||||||||| || ||||| ||||||||||||||||||||||||| || |||||||| |
Sbjct: 107109 gcgacggatttacaaatgggacaccagttcttctgccggagccagttctttatgcaggag 107168

                                                                          
Query: 265    atgtggtagtagtgcttacacgccatgttccccacctcctcaccaccagagtactcctcc 324
              | ||||||||| || || ||  |||| || ||||||||||||||| | || || ||||||
Sbjct: 107169 aagtggtagtaatgtttgcagaccatcttgcccacctcctcaccatctgaatattcctcc 107228

                
Query: 325    tg 326
              ||
Sbjct: 107229 tg 107230



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 57/67 (85%)
 Strand = Plus / Plus

                                                                          
Query: 478    gacatgccgtcgatgtccatcctcatcgcccggtgccgatcactgagcatgaagtagttc 537
              ||||||||||| |||||||| |||||| | | || ||||||| |||  ||||||||||||
Sbjct: 107630 gacatgccgtcaatgtccattctcatccctctgtaccgatcattgaatatgaagtagttc 107689

                     
Query: 538    tccagct 544
              || ||||
Sbjct: 107690 tcaagct 107696



 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 323    cctggcatatgctgcattttct 344
              ||||||||||||||||||||||
Sbjct: 107325 cctggcatatgctgcattttct 107346
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 104/122 (85%)
 Strand = Plus / Plus

                                                                            
Query: 205      gcgacggatttgcagatggggcaccagttcttctgccggagccagtgctgtatgcaggtg 264
                ||||||||||| || ||||| ||||||||||||||||||||||||| || |||||||| |
Sbjct: 30473732 gcgacggatttacaaatgggacaccagttcttctgccggagccagttctttatgcaggag 30473791

                                                                            
Query: 265      atgtggtagtagtgcttacacgccatgttccccacctcctcaccaccagagtactcctcc 324
                | ||||||||| || || ||  |||| || ||||||||||||||| | || || ||||||
Sbjct: 30473792 aagtggtagtaatgtttgcagaccatcttgcccacctcctcaccatctgaatattcctcc 30473851

                  
Query: 325      tg 326
                ||
Sbjct: 30473852 tg 30473853



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 57/67 (85%)
 Strand = Plus / Plus

                                                                            
Query: 478      gacatgccgtcgatgtccatcctcatcgcccggtgccgatcactgagcatgaagtagttc 537
                ||||||||||| |||||||| |||||| | | || ||||||| |||  ||||||||||||
Sbjct: 30474253 gacatgccgtcaatgtccattctcatccctctgtaccgatcattgaatatgaagtagttc 30474312

                       
Query: 538      tccagct 544
                || ||||
Sbjct: 30474313 tcaagct 30474319



 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 323      cctggcatatgctgcattttct 344
                ||||||||||||||||||||||
Sbjct: 30473948 cctggcatatgctgcattttct 30473969
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>dbj|AK073515.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033040F16, full
           insert sequence
          Length = 2340

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 104/122 (85%)
 Strand = Plus / Plus

                                                                       
Query: 205 gcgacggatttgcagatggggcaccagttcttctgccggagccagtgctgtatgcaggtg 264
           ||||||||||| || ||||| ||||||||||||||||||||||||| || |||||||| |
Sbjct: 593 gcgacggatttacaaatgggacaccagttcttctgccggagccagttctttatgcaggag 652

                                                                       
Query: 265 atgtggtagtagtgcttacacgccatgttccccacctcctcaccaccagagtactcctcc 324
           | ||||||||| || || ||  |||| || ||||||||||||||| | || || ||||||
Sbjct: 653 aagtggtagtaatgtttgcagaccatcttgcccacctcctcaccatctgaatattcctcc 712

             
Query: 325 tg 326
           ||
Sbjct: 713 tg 714



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 57/67 (85%)
 Strand = Plus / Plus

                                                                        
Query: 478  gacatgccgtcgatgtccatcctcatcgcccggtgccgatcactgagcatgaagtagttc 537
            ||||||||||| |||||||| |||||| | | || ||||||| |||  ||||||||||||
Sbjct: 1114 gacatgccgtcaatgtccattctcatccctctgtaccgatcattgaatatgaagtagttc 1173

                   
Query: 538  tccagct 544
            || ||||
Sbjct: 1174 tcaagct 1180



 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 323 cctggcatatgctgcattttct 344
           ||||||||||||||||||||||
Sbjct: 809 cctggcatatgctgcattttct 830
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>ref|XM_480915.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1050

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 40/43 (93%)
 Strand = Plus / Minus

                                                       
Query: 206  cgacggatttgcagatggggcaccagttcttctgccggagcca 248
            ||||||||||||||||||||||||| ||||| ||||| |||||
Sbjct: 1030 cgacggatttgcagatggggcaccaattcttttgccgaagcca 988



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                    
Query: 463 agcaattcctcgtaggacatgccgtcgatgtccatcctcat 503
           ||||||||||| || |||||| ||||||||||||| |||||
Sbjct: 773 agcaattcctcataagacatgtcgtcgatgtccattctcat 733
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 40/43 (93%)
 Strand = Plus / Minus

                                                          
Query: 206     cgacggatttgcagatggggcaccagttcttctgccggagcca 248
               ||||||||||||||||||||||||| ||||| ||||| |||||
Sbjct: 8577507 cgacggatttgcagatggggcaccaattcttttgccgaagcca 8577465
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>dbj|AP005249.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBa0087F21
          Length = 187401

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 40/43 (93%)
 Strand = Plus / Minus

                                                        
Query: 206   cgacggatttgcagatggggcaccagttcttctgccggagcca 248
             ||||||||||||||||||||||||| ||||| ||||| |||||
Sbjct: 89418 cgacggatttgcagatggggcaccaattcttttgccgaagcca 89376
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>dbj|AP004657.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0031C02
          Length = 138843

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 40/43 (93%)
 Strand = Plus / Minus

                                                         
Query: 206    cgacggatttgcagatggggcaccagttcttctgccggagcca 248
              ||||||||||||||||||||||||| ||||| ||||| |||||
Sbjct: 107050 cgacggatttgcagatggggcaccaattcttttgccgaagcca 107008
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>dbj|AK120070.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013003N07, full
            insert sequence
          Length = 2128

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                       
Query: 315  gtactcctcctggcatatgctgcattt 341
            |||||||||||||||||||||||||||
Sbjct: 1869 gtactcctcctggcatatgctgcattt 1843



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 42/49 (85%)
 Strand = Plus / Minus

                                                             
Query: 213  tttgcagatggggcaccagttcttctgccggagccagtgctgtatgcag 261
            |||||| || || |||||||||||||||| |||||| || || ||||||
Sbjct: 1971 tttgcatattggacaccagttcttctgcctgagccactggtgaatgcag 1923
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>gb|AC074191.3| Homo sapiens chromosome 11 clone RP11-502G22, complete sequence
          Length = 179357

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 322   tcctggcatatgctgcattttc 343
             ||||||||||||||||||||||
Sbjct: 75165 tcctggcatatgctgcattttc 75186
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>emb|BX119977.10| Zebrafish DNA sequence from clone CH211-198A3 in linkage group 7,
             complete sequence
          Length = 182186

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 250   tgctgtatgcaggtgatgtggt 271
             ||||||||||||||||||||||
Sbjct: 72837 tgctgtatgcaggtgatgtggt 72816
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>emb|AL662893.12| Mouse DNA sequence from clone RP23-202G21 on chromosome 11, complete
             sequence
          Length = 205405

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 122   atcttgtgtctagacatttcag 143
             ||||||||||||||||||||||
Sbjct: 98271 atcttgtgtctagacatttcag 98250
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>gb|AC122239.4| Mus musculus BAC clone RP23-143K14 from chromosome 8, complete sequence
          Length = 197109

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 15     ttccctttttattgtccactg 35
              |||||||||||||||||||||
Sbjct: 100775 ttccctttttattgtccactg 100755
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>emb|AL157364.15| Human DNA sequence from clone RP11-31H2 on chromosome 13 Contians the
            ATP12A gene for ATPase, H+/K+ transporting, nongastric,
            alpha polypeptide, a ribosomal protein L26 (RPL26)
            pseudogene and a CpG island, complete sequence
          Length = 91231

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 162  aacaagcagaggctgctggtg 182
            |||||||||||||||||||||
Sbjct: 2273 aacaagcagaggctgctggtg 2253
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>gb|AC153013.3| Mus musculus BAC clone RP23-273N8 from chromosome 8, complete
            sequence
          Length = 196609

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 15   ttccctttttattgtccactg 35
            |||||||||||||||||||||
Sbjct: 3402 ttccctttttattgtccactg 3382
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 42/49 (85%)
 Strand = Plus / Minus

                                                                
Query: 213     tttgcagatggggcaccagttcttctgccggagccagtgctgtatgcag 261
               |||||| || || |||||||||||||||| |||||| || || ||||||
Sbjct: 2795248 tttgcatattggacaccagttcttctgcctgagccactggtgaatgcag 2795200
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>dbj|AP005412.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0050G13
          Length = 150685

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 42/49 (85%)
 Strand = Plus / Minus

                                                              
Query: 213   tttgcagatggggcaccagttcttctgccggagccagtgctgtatgcag 261
             |||||| || || |||||||||||||||| |||||| || || ||||||
Sbjct: 63476 tttgcatattggacaccagttcttctgcctgagccactggtgaatgcag 63428
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>dbj|AB112588.1| Satsuma dwarf virus CP gene for coat proteins, partial cds
          Length = 2160

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                               
Query: 67 ttgaaggcacaaacaaatgtt 87
          |||||||||||||||||||||
Sbjct: 61 ttgaaggcacaaacaaatgtt 41
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>gb|AC102414.8| Mus musculus chromosome 15, clone RP24-474D5, complete sequence
          Length = 159739

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 293    tccccacctcctcaccacca 312
              ||||||||||||||||||||
Sbjct: 130242 tccccacctcctcaccacca 130261
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>gb|AC131191.4| Mus musculus BAC clone RP24-464B16 from chromosome 18, complete
             sequence
          Length = 136832

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 62    aagtcttgaaggcacaaacaaatg 85
             ||||| ||||||||||||||||||
Sbjct: 64966 aagtcctgaaggcacaaacaaatg 64943
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>gb|AC130714.3| Mus musculus BAC clone RP23-367L18 from chromosome 18, complete sequence
          Length = 193184

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 62     aagtcttgaaggcacaaacaaatg 85
              ||||| ||||||||||||||||||
Sbjct: 170438 aagtcctgaaggcacaaacaaatg 170415
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>emb|Z98533.1|SPAC6F12 S.pombe chromosome I cosmid c6F12
          Length = 44658

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 12    ttgttccctttttattgtcc 31
             ||||||||||||||||||||
Sbjct: 38395 ttgttccctttttattgtcc 38376
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>gb|AF214671.8| Homo sapiens chromosome 8 clone GS1-42F21 map 8qtel, complete sequence
          Length = 78545

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 134   gacatttcaggagaatctgt 153
             ||||||||||||||||||||
Sbjct: 26683 gacatttcaggagaatctgt 26702
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>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 361     gtctctggggctgtgggcgt 380
               ||||||||||||||||||||
Sbjct: 6259245 gtctctggggctgtgggcgt 6259226
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>gb|AC105218.4| Homo sapiens chromosome 8, clone RP11-410F13, complete sequence
          Length = 138416

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 293  tccccacctcctcaccacca 312
            ||||||||||||||||||||
Sbjct: 4265 tccccacctcctcaccacca 4246
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>gb|AC097535.3| Homo sapiens BAC clone RP11-802H3 from 4, complete sequence
          Length = 72759

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 293   tccccacctcctcaccacca 312
             ||||||||||||||||||||
Sbjct: 20301 tccccacctcctcaccacca 20282
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>gb|AC021500.6| Homo sapiens chromosome 8, clone RP11-135K1, complete sequence
          Length = 160348

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 293   tccccacctcctcaccacca 312
             ||||||||||||||||||||
Sbjct: 62816 tccccacctcctcaccacca 62835
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>dbj|AB169825.1| Macaca fascicularis brain cDNA, clone: QflA-12931, similar to human
           RAB3A, member RAS oncogene family (RAB3A), mRNA, RefSeq:
           NM_002866.3
          Length = 1584

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 584 agtcctcggtgccgtcctgcaaag 607
           ||||||||||| ||||||||||||
Sbjct: 44  agtcctcggtgacgtcctgcaaag 21
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>gb|AC153359.4| Mus musculus BAC clone RP23-477I1 from chromosome 9, complete sequence
          Length = 195269

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 8     tttcttgttccctttttatt 27
             ||||||||||||||||||||
Sbjct: 96018 tttcttgttccctttttatt 95999
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>ref|NM_001018732.1| Schizosaccharomyces pombe 972h- hypothetical protein (SPAC6F12.16c),
            partial mRNA
          Length = 3354

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 12   ttgttccctttttattgtcc 31
            ||||||||||||||||||||
Sbjct: 2405 ttgttccctttttattgtcc 2424
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>gb|AC103777.14| Homo sapiens chromosome 8, clone RP11-460G23, complete sequence
          Length = 164588

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 134   gacatttcaggagaatctgt 153
             ||||||||||||||||||||
Sbjct: 86169 gacatttcaggagaatctgt 86150
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>gb|AE004577.1| Pseudomonas aeruginosa PAO1, section 138 of 529 of the complete
            genome
          Length = 13737

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 577  ccgctggagtcctcggtgcc 596
            ||||||||||||||||||||
Sbjct: 9373 ccgctggagtcctcggtgcc 9354
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>gb|AC027653.3| Mus musculus strain C57BL6/J chromosome 5 clone RP23-166J14, complete
             sequence
          Length = 174990

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 289   atgttccccacctcctcacc 308
             ||||||||||||||||||||
Sbjct: 16261 atgttccccacctcctcacc 16242
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>gb|AC090644.2| Homo sapiens chromosome 3 clone RP11-322M13 map 3p, complete sequence
          Length = 201414

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 152   gtttacactaaacaagcaga 171
             ||||||||||||||||||||
Sbjct: 36047 gtttacactaaacaagcaga 36028
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>emb|CR848035.7| Zebrafish DNA sequence from clone CH211-203J1 in linkage group 12,
             complete sequence
          Length = 143674

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 54    aagacaagaagtcttgaaggcaca 77
             ||||||||||||||| ||||||||
Sbjct: 77302 aagacaagaagtcttaaaggcaca 77279
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>gb|AY104424.1| Zea mays PCO061312 mRNA sequence
          Length = 1386

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 214  ttgcagatggggcaccagttcttc 237
            ||||||||||||||| ||||||||
Sbjct: 1368 ttgcagatggggcacaagttcttc 1345
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>dbj|AP001972.4| Homo sapiens genomic DNA, chromosome 11q, clone:CTD-2562J17, complete
              sequences
          Length = 215225

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 293    tccccacctcctcaccacca 312
              ||||||||||||||||||||
Sbjct: 128395 tccccacctcctcaccacca 128414
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>gb|AC064793.3| Mus musculus strain C57BL6/J chromosome 5 clone RP23-369O21, complete
              sequence
          Length = 196933

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 289    atgttccccacctcctcacc 308
              ||||||||||||||||||||
Sbjct: 138382 atgttccccacctcctcacc 138363
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>dbj|AP005713.2| Homo sapiens genomic DNA, chromosome 8q24, clone: KB262G12, complete
              sequence
          Length = 126698

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 134    gacatttcaggagaatctgt 153
              ||||||||||||||||||||
Sbjct: 106443 gacatttcaggagaatctgt 106424
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>emb|AL929277.9| Mouse DNA sequence from clone RP23-153J22 on chromosome 4, complete
              sequence
          Length = 144310

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 69     gaaggcacaaacaaatgttt 88
              ||||||||||||||||||||
Sbjct: 129598 gaaggcacaaacaaatgttt 129617
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>gb|AC158142.19| Mus musculus chromosome 15, clone RP24-342H15, complete sequence
          Length = 195319

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 293   tccccacctcctcaccacca 312
             ||||||||||||||||||||
Sbjct: 40982 tccccacctcctcaccacca 41001
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>dbj|AB027847.1| Schizosaccharomyces pombe gene for Putative helicase, partial cds,
           clone:SA29
          Length = 645

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 12  ttgttccctttttattgtcc 31
           ||||||||||||||||||||
Sbjct: 152 ttgttccctttttattgtcc 171


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,125,532
Number of Sequences: 3902068
Number of extensions: 5125532
Number of successful extensions: 96360
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 96156
Number of HSP's gapped (non-prelim): 204
length of query: 650
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 627
effective length of database: 17,143,297,704
effective search space: 10748847660408
effective search space used: 10748847660408
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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